BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0028.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01045653.1| hypothetical protein NB311A_20826 [Nitrobacte... 416 e-114 ref|ZP_01048193.1| gp47 [Nitrobacter sp. Nb-311A] >gi|85695951|g... 400 e-110 ref|ZP_08630755.1| hypothetical protein CSIRO_3865 [Bradyrhizobi... 342 5e-92 ref|YP_002497823.1| hypothetical protein Mnod_2556 [Methylobacte... 102 9e-20 ref|ZP_03717594.1| hypothetical protein EUBHAL_02676 [Eubacteriu... 85 1e-14 >ref|ZP_01045653.1| hypothetical protein NB311A_20826 [Nitrobacter sp. Nb-311A] gb|EAQ36421.1| hypothetical protein NB311A_20826 [Nitrobacter sp. Nb-311A] Length = 290 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/264 (73%), Positives = 226/264 (85%) Query: 7 RRTFIGGSDARIIMGDDEGNLIRLWQEKRGETEPVDLSQNLIVQLGKVTEDLNRTWYERC 66 RR FIGGSDA+IIMG+D L+RLWQEKRGE EP DLS L+VQLG VTE+LNR W+ER Sbjct: 27 RRNFIGGSDAKIIMGEDLTKLVRLWQEKRGEVEPEDLSGVLVVQLGTVTEELNRRWFERS 86 Query: 67 TKHRIKDIQRRVRHPVHKWMAATLDGMIEDTGAVFEAKFMLPWSFAEEAAVEKHMAQLQH 126 T H IKD+QRR+ HP+HKWM ATLDG I+ T A+FEAKFMLPW+F+EEAA EKHMAQLQH Sbjct: 87 TGHSIKDVQRRIHHPIHKWMGATLDGRIQQTNAIFEAKFMLPWTFSEEAAAEKHMAQLQH 146 Query: 127 NMWVVSARNSVLSIITGGGKWVEITICADPLYQHLLLTAERKFWRCVQTGEQPTLFGVET 186 NMWV +A+ + LSIITGGGKWVE+TI ADPLYQHLLLTAE+KFWRCVQ GE P LFGVET Sbjct: 147 NMWVANAQAASLSIITGGGKWVEMTIPADPLYQHLLLTAEKKFWRCVQNGEPPRLFGVET 206 Query: 187 PRPRLEAVRLVDMSSSNHWAELAACYLRTRVAHGDHEAAKSELKKLLPEDAKEATGHGVR 246 PR RLEAVR+VDMS+SN WAELA+ Y RTR A+ +HE+AKS+LKKL+PEDAKEA GHG+R Sbjct: 207 PRVRLEAVRVVDMSASNSWAELASIYQRTRAAYHEHESAKSDLKKLVPEDAKEAVGHGIR 266 Query: 247 AKRSKSGAISFEAVEMGGVHASVK 270 AKRSKSGAISFE ++ V+A ++ Sbjct: 267 AKRSKSGAISFELADLEAVNAQIQ 290 >ref|ZP_01048193.1| gp47 [Nitrobacter sp. Nb-311A] gb|EAQ33853.1| gp47 [Nitrobacter sp. Nb-311A] Length = 271 Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/257 (73%), Positives = 219/257 (85%) Query: 5 QDRRTFIGGSDARIIMGDDEGNLIRLWQEKRGETEPVDLSQNLIVQLGKVTEDLNRTWYE 64 + R FIGGSDARIIMGDDE LI+LW+EKRGE P DLS NLIVQLG TEDLNR WYE Sbjct: 7 KSRIGFIGGSDARIIMGDDERKLIQLWREKRGEAGPEDLSDNLIVQLGNATEDLNRRWYE 66 Query: 65 RCTKHRIKDIQRRVRHPVHKWMAATLDGMIEDTGAVFEAKFMLPWSFAEEAAVEKHMAQL 124 R T +KD Q+RV+HPVHKWMAATLDG+++ +GAVFEAKFMLPW+F+E AA EKH AQL Sbjct: 67 RNTGSSVKDSQKRVQHPVHKWMAATLDGLVQPSGAVFEAKFMLPWTFSEVAAAEKHTAQL 126 Query: 125 QHNMWVVSARNSVLSIITGGGKWVEITICADPLYQHLLLTAERKFWRCVQTGEQPTLFGV 184 QHNMWV +A ++VLSIITGGGKWVE+ I ADPLYQHLLLTAERKFWRCVQ+GE P LFGV Sbjct: 127 QHNMWVANASSAVLSIITGGGKWVELQIHADPLYQHLLLTAERKFWRCVQSGEAPRLFGV 186 Query: 185 ETPRPRLEAVRLVDMSSSNHWAELAACYLRTRVAHGDHEAAKSELKKLLPEDAKEATGHG 244 E PRPRLEAVR+VDMS SN WA+ AA + RT A+ +HEAAK++LKKL+PEDA+EA GHG Sbjct: 187 EPPRPRLEAVRVVDMSGSNAWADFAATFCRTHSAYQEHEAAKADLKKLVPEDAREAMGHG 246 Query: 245 VRAKRSKSGAISFEAVE 261 +RA+RSKSGAISF+ +E Sbjct: 247 LRARRSKSGAISFDLLE 263 >ref|ZP_08630755.1| hypothetical protein CSIRO_3865 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06609.1| hypothetical protein CSIRO_3865 [Bradyrhizobiaceae bacterium SG-6C] Length = 251 Score = 342 bits (876), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 163/251 (64%), Positives = 196/251 (78%) Query: 20 MGDDEGNLIRLWQEKRGETEPVDLSQNLIVQLGKVTEDLNRTWYERCTKHRIKDIQRRVR 79 MG DE L+RLW+EKRGE DLS LIVQLG VTEDLNR W+E + R+ D+QR Sbjct: 1 MGKDEKALLRLWKEKRGEVAGPDLSGVLIVQLGLVTEDLNRRWFELQSGQRVVDVQRHAI 60 Query: 80 HPVHKWMAATLDGMIEDTGAVFEAKFMLPWSFAEEAAVEKHMAQLQHNMWVVSARNSVLS 139 H WMAATLDG++E TGAVFEAKFMLPWSF+EEAA EKHMAQLQHNM V + SVLS Sbjct: 61 HRAFPWMAATLDGLVEATGAVFEAKFMLPWSFSEEAAAEKHMAQLQHNMLVAGTKISVLS 120 Query: 140 IITGGGKWVEITICADPLYQHLLLTAERKFWRCVQTGEQPTLFGVETPRPRLEAVRLVDM 199 II GGGKWVE+ I ADP+YQ +L+ AE+ FWR V+TGE P LF E P+PR+EAVR+VDM Sbjct: 121 IINGGGKWVELVIEADPIYQTVLIAAEKAFWRAVKTGEPPALFDCEPPKPRIEAVRVVDM 180 Query: 200 SSSNHWAELAACYLRTRVAHGDHEAAKSELKKLLPEDAKEATGHGVRAKRSKSGAISFEA 259 ++SN WAE A+ Y+ TR A+ DHE AK+ELK L+PEDAKEA GHG+RAKRSK+GA+SF+ Sbjct: 181 NASNAWAEFASLYVETRSAYLDHERAKTELKVLMPEDAKEAMGHGIRAKRSKTGAVSFDL 240 Query: 260 VEMGGVHASVK 270 +EM HAS++ Sbjct: 241 LEMVNAHASLE 251 >ref|YP_002497823.1| hypothetical protein Mnod_2556 [Methylobacterium nodulans ORS 2060] gb|ACL57520.1| hypothetical protein Mnod_2556 [Methylobacterium nodulans ORS 2060] Length = 133 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 47/92 (51%), Positives = 65/92 (70%) Query: 154 ADPLYQHLLLTAERKFWRCVQTGEQPTLFGVETPRPRLEAVRLVDMSSSNHWAELAACYL 213 A+P+ Q +LL +R F RCV+TG+ P +FG + P+ +L AV +VD ++SN WAE AA + Sbjct: 7 ANPVCQTVLLQVQRIFCRCVRTGKVPEVFGDQAPKAKLPAVTVVDPTASNAWAEYAAVFA 66 Query: 214 RTRVAHGDHEAAKSELKKLLPEDAKEATGHGV 245 RT H HE+A++ LK L PEDAKEA GHG+ Sbjct: 67 RTCAVHAKHESARAVLKALAPEDAKEAAGHGL 98 >ref|ZP_03717594.1| hypothetical protein EUBHAL_02676 [Eubacterium hallii DSM 3353] gb|EEG35455.1| hypothetical protein EUBHAL_02676 [Eubacterium hallii DSM 3353] Length = 313 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 8/178 (4%) Query: 11 IGGSDARIIMG-DDEGNLIRLWQEKRGETEPVDLSQNLIVQLGKVTEDLNRTWYERCTKH 69 IGGSDA II G + ++ LWQEKRGE PV ++ + GKV ED+ R + + T Sbjct: 25 IGGSDAGIIAGCNPYRSIFELWQEKRGEI-PVREEESEVTHFGKVLEDVVRKEFIQRTGL 83 Query: 70 RIKDIQRRVRHPVHKWMAATLDGMIED---TGAVFEAKFMLPWSFAE--EAAVEK-HMAQ 123 ++ +R + +M A +DG+I + T ++FEAK + + + + K + Q Sbjct: 84 MVRKKNSILRSKEYPFMIADVDGIISELDGTYSIFEAKTAIEFKNNDWKNGEIPKAYQLQ 143 Query: 124 LQHNMWVVSARNSVLSIITGGGKWVEITICADPLYQHLLLTAERKFWRCVQTGEQPTL 181 +QH + V + + ++++ GG K+ + D +L++ E FW CV+ GE+P + Sbjct: 144 VQHYLAVTGFQKAYIAVLVGGNKFYWTEVYRDEQLIKMLVSMESHFWHCVREGEEPDV 201