BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0026.p         (136 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01048195.1| hypothetical protein NB311A_20026 [Nitrobacte...   108   2e-22
ref|ZP_08630724.1| hypothetical protein CSIRO_3834 [Bradyrhizobi...    45   0.003
ref|YP_001753917.1| HNH nuclease [Methylobacterium radiotolerans...    40   0.12 
ref|ZP_05068898.1| glutamine synthetase [Candidatus Pelagibacter...    35   3.4  
ref|XP_737904.1| Pc-fam-3 protein [Plasmodium chabaudi chabaudi]...    35   4.1  

>ref|ZP_01048195.1| hypothetical protein NB311A_20026 [Nitrobacter sp. Nb-311A]
 gb|EAQ33855.1| hypothetical protein NB311A_20026 [Nitrobacter sp. Nb-311A]
          Length = 198

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 86/134 (64%)

Query: 3   PRSAIEWLLAIDVAELSWETQRYRVLRHRLLATYRQQAIEAALRRIDMAGIAPEFEDEAD 62
           P++ +EWL  +D+ ELSWE  RYR +R ++L  +R  AI + L+++D  G+  + +    
Sbjct: 44  PKTNLEWLWVLDLVELSWEILRYRRMREKILEIHRVDAIASILQQLDGVGMPSQSQAFVQ 103

Query: 63  YYTRQNALSWRLDTVAATEIEAHLASYGFDQHSINTDVYVQAREVFVLFEGRLNAAQARR 122
             +R++++ WR D  AA+EIEA L + GFD  ++N +V++ A+  F LF+  + +AQ+RR
Sbjct: 104 SCSRRSSMEWREDPTAASEIEARLVAGGFDTAAVNAEVFLLAQSSFGLFDRLMQSAQSRR 163

Query: 123 LVLIREIRRHRFPD 136
           + L REI  HR  D
Sbjct: 164 ISLFREITGHRVLD 177


>ref|ZP_08630724.1| hypothetical protein CSIRO_3834 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP06578.1| hypothetical protein CSIRO_3834 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 205

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 3   PRSAIEWLLAIDVAELSWETQRYRVLRHRLLATYRQQAIEAALRRIDMAGIAPEFEDEAD 62
           P+  IE L   D+ +L+WE  R R +R  LL   R  A+E  L R ++  +    E  A 
Sbjct: 52  PKDFIERLFVRDLIDLTWEECRLRQIREALLGESRSAAVERLLYRKNLREVPEGAERIAR 111

Query: 63  YYTRQNALSWRLDTVAATEIEAHLA--SYGFDQHSINTDVYVQAREVFVLFEGRLNAAQA 120
              +    +W  D     EIE  L   S+G DQ +I    Y +  +     +  +  AQ 
Sbjct: 112 AQAKDQFKNWANDRAKRKEIEEDLNKHSHGEDQ-AILAASYSEIYKELESVKKSIAFAQQ 170

Query: 121 RRLVLIREIRRHR 133
           RR+ L+REI   R
Sbjct: 171 RRMGLLREIEHRR 183


>ref|YP_001753917.1| HNH nuclease [Methylobacterium radiotolerans JCM 2831]
 gb|ACB23234.1| HNH nuclease [Methylobacterium radiotolerans JCM 2831]
          Length = 401

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 9/136 (6%)

Query: 3   PRSAIEWLLAIDVAELSWETQRYRVLRHRLLATYRQQAIEAALRRIDMAGIAPEFEDEAD 62
           P   IE L   D+ +L WE +R R  R ++L   + +A+E  +R     G   +      
Sbjct: 247 PADVIEALCVKDIVDLIWEAKRLRRWRGQILVQAQLKAVEELIRPTLQNGEDIDISTAPG 306

Query: 63  YYTRQNALSWRLDTVAATEIEAHLASYGFDQHSINT-DVYVQAREVFVLFEGRLN----A 117
           Y     AL W    V   EI+  L      + S+   D+  Q   + +    R++    A
Sbjct: 307 YSPEALALGW----VTGREIKKGLVDKILQERSLTAEDIKAQGFLLTLPAIERIDRLASA 362

Query: 118 AQARRLVLIREIRRHR 133
           A  RR  L+REI R R
Sbjct: 363 ADQRRDALLREIERKR 378


>ref|ZP_05068898.1| glutamine synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gb|EDZ59897.1| glutamine synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 473

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 12  AIDVAELSWETQRYRVLRHRLLATYRQQAIEAALRRIDMAGIAPEFEDEADYYTRQNALS 71
           AI  A+L WE + Y V   + L    Q+A +A  R   MAG+ PEF   A  Y       
Sbjct: 107 AIIFADLFWEDKPYNVCPRQALKRNMQKAQDAGYR--GMAGVEPEF--IAMKYDENGQPI 162

Query: 72  WRLDTVAATEIEAHLASYGFD-QHSINT 98
             +DT     +     ++G+D +HS+++
Sbjct: 163 KAIDTDPIKGVRPRRQAFGYDVEHSLDS 190


>ref|XP_737904.1| Pc-fam-3 protein [Plasmodium chabaudi chabaudi]
 emb|CAH76127.1| Pc-fam-3 protein putative [Plasmodium chabaudi chabaudi]
          Length = 102

 Score = 35.0 bits (79), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 75  DTVAATEIEAHLASYGFDQHSINTDVYVQAREVFVLF 111
           D V  T I AHL+ + F  + I  DVY+Q  E+F +F
Sbjct: 61  DQVHVTYINAHLSKFSFPINHILYDVYIQTAEIFYIF 97