BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0024.p         (66 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770130.1| hypothetical protein blr3490 [Bradyrhizobium ja...    49   2e-04
ref|YP_203893.1| fimbrial protein precursor [Vibrio fischeri ES1...    47   0.001
ref|YP_002155266.1| hypothetical protein VFMJ11_0512 [Vibrio fis...    46   0.002
ref|ZP_08100804.1| hypothetical protein VISI1226_05039 [Vibrio s...    44   0.006
ref|YP_001758993.1| Flp/Fap pilin component [Shewanella woodyi A...    42   0.023

>ref|NP_770130.1| hypothetical protein blr3490 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48755.1| blr3490 [Bradyrhizobium japonicum USDA 110]
          Length = 115

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 26/34 (76%)

Query: 1  MSKFYVNTTEALQCLRADKHGVVSFEYIIVAACI 34
          M  +Y+ T EAL+ LR D+ GVVSFEYIIVA CI
Sbjct: 45 MLTYYIETREALKRLRTDQDGVVSFEYIIVAVCI 78


>ref|YP_203893.1| fimbrial protein precursor [Vibrio fischeri ES114]
 gb|AAW85005.1| fimbrial protein precursor [Vibrio fischeri ES114]
          Length = 71

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 1  MSKFYVNTTEALQCLRADKHGVVSFEYIIVAACIVAVVIAVFKTDTSISAALAGGITKIS 60
          ++K +V +  ALQ  + D+ GV + EY I+  C+ A+V+AVF  + ++  AL G +  IS
Sbjct: 2  LTKLFVKSQLALQSFKNDERGVTAIEYAIIGVCMSAIVLAVF--NGTLQEALQGAMDTIS 59

Query: 61 S 61
          +
Sbjct: 60 T 60


>ref|YP_002155266.1| hypothetical protein VFMJ11_0512 [Vibrio fischeri MJ11]
 gb|ACH65878.1| conserved domain protein [Vibrio fischeri MJ11]
          Length = 74

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 1  MSKFYVNTTEALQCLRADKHGVVSFEYIIVAACIVAVVIAVFKTDTSISAALAGGITKIS 60
          ++K +V +  ALQ  + D+ GV + EY I+  C+  +V+AVF  + S+  AL G +  IS
Sbjct: 2  LTKLFVKSQLALQSFKNDERGVTAIEYAIIGVCMATIVLAVF--NGSLQTALEGAMKTIS 59


>ref|ZP_08100804.1| hypothetical protein VISI1226_05039 [Vibrio sinaloensis DSM
          21326]
 gb|EGA72142.1| hypothetical protein VISI1226_05039 [Vibrio sinaloensis DSM
          21326]
          Length = 85

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 12 LQCLRADKHGVVSFEYIIVAACIVAVVIAVFKTDTSISAALAGGITKISSAMA 64
          L    AD+ GV + EY I+   I A+V+AVF TD  +  A +G ++ ISS +A
Sbjct: 27 LHAFFADQRGVTAIEYAIIGVIISAMVLAVFVTDNDLQTAFSGAMSAISSNIA 79


>ref|YP_001758993.1| Flp/Fap pilin component [Shewanella woodyi ATCC 51908]
 gb|ACA84898.1| Flp/Fap pilin component [Shewanella woodyi ATCC 51908]
          Length = 69

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 1  MSKFYVNTTEALQCLRADKHGVVSFEYIIVAACIVAVVIAVFKTDTSISAALAGGITKIS 60
          M+KFY NT   L   + D+ GV + EY ++   +   + A F +D ++  AL    TKI+
Sbjct: 1  MNKFYCNTMAFLATYKKDERGVTAIEYGLIGVAMAVALTAAFASDGNLMTALNTAFTKIT 60

Query: 61 SAM 63
           ++
Sbjct: 61 DSL 63