BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0018.p (178 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002428329.1| glutamyl-tRNA amidotransferase subunit A, pu... 38 0.51 emb|CCB83333.1| branched-chain amino acid transport protein [Lac... 37 0.85 emb|CCC18393.1| branched-chain amino acid transport protein [Lac... 36 1.8 ref|NP_785704.1| branched-chain amino acid transport protein [La... 35 4.6 ref|YP_004611197.1| hypothetical protein Mesop_2633 [Mesorhizobi... 35 4.8 >ref|XP_002428329.1| glutamyl-tRNA amidotransferase subunit A, putative [Pediculus humanus corporis] gb|EEB15591.1| glutamyl-tRNA amidotransferase subunit A, putative [Pediculus humanus corporis] Length = 517 Score = 38.1 bits (87), Expect = 0.51, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 10/131 (7%) Query: 16 FVATLGAELAALALQYSPTSELLWFVNLRIFGIFQRSHALLGDYVAIDGFQLF-----GI 70 F AE + L S +WF +RI Q L + ++ + F G+ Sbjct: 335 FEQVHNAETQRVVLNKLKYSMAIWFAKMRIPEGSQLPVELSNNKGKVNIVKEFIKFPFGL 394 Query: 71 ALPLLVLACVGLVTKARPVFTIATHMS--AGYAGFLLYAWHAGSPTTAQASLGPFAIPTG 128 + L + C+GL+ K P + H++ + Y G L+Y H PT A P P Sbjct: 395 SNHTLPILCIGLMEKLNPEYNSPKHVNFVSMYDGVLIYPTH---PTAAPYHNEPLFKPIN 451 Query: 129 AGLYLMATILG 139 G + +LG Sbjct: 452 VGYTAVFNVLG 462 >emb|CCB83333.1| branched-chain amino acid transport protein [Lactobacillus pentosus MP-10] Length = 446 Score = 37.4 bits (85), Expect = 0.85, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 19/162 (11%) Query: 29 LQYSPTSELLWFVNLRIFGIFQRSHALL---------GDYV--AIDGFQLFGIALPLLVL 77 +Q + L F+ +FG+F + L+ G +V AI G + GI LPLL + Sbjct: 1 MQNRLSGRNLGFIGTMLFGLFFGAGNLIFPIYLGQQAGHHVGLAIIGLLITGIGLPLLGV 60 Query: 78 ACVGLVTKARPVFTIATHMSAGYA-GFLLYAWHAGSPTTAQASLGPFAIPTGAGLYLMAT 136 +GL T+++ VF +A+++S YA GF + + P A L A G +L Sbjct: 61 IGMGL-TRSQGVFDLASNISRPYAYGFTVLLYFTLGPLFAMPRLATTAFQIGLAPFLSTN 119 Query: 137 I-----LGACLLSFAITHLLYFQAVGQEIGALARWLRPRWTI 173 + LG L+ F +T LL + G+ + + +WL P + I Sbjct: 120 VQPIVLLGFSLIFFIVTWLLA-RNPGKIMTYVGKWLTPAFLI 160 >emb|CCC18393.1| branched-chain amino acid transport protein [Lactobacillus pentosus IG1] Length = 446 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 17/161 (10%) Query: 29 LQYSPTSELLWFVNLRIFGIFQRSHALL---------GDYV--AIDGFQLFGIALPLLVL 77 +Q + L F+ +FG+F + L+ G +V AI G + GI LPLL + Sbjct: 1 MQNRLSGRNLGFIGTMLFGLFFGAGNLIFPIYLGQQAGHHVGLAIIGLLITGIGLPLLGV 60 Query: 78 ACVGLVTKARPVFTIATHMSAGYA-GFLLYAWHAGSPTTAQASLGPFAIPTGAGLYLMAT 136 +GL T+++ VF +A+++S YA GF + + P A L A G +L Sbjct: 61 IGMGL-TRSQGVFDLASNVSRPYAYGFTVLLYFTLGPLFAMPRLATTAFQIGLAPFLSTN 119 Query: 137 ILGACLLSFA----ITHLLYFQAVGQEIGALARWLRPRWTI 173 + LL F+ I L + G+ + + +WL P + I Sbjct: 120 VQPIVLLGFSLAFFIVTWLLARNPGKIMTYVGKWLTPAFLI 160 >ref|NP_785704.1| branched-chain amino acid transport protein [Lactobacillus plantarum WCFS1] ref|YP_003063434.1| branched-chain amino acid transport protein [Lactobacillus plantarum JDM1] ref|YP_003925139.1| branched-chain amino acid transport protein [Lactobacillus plantarum subsp. plantarum ST-III] gb|ACT62737.1| branched-chain amino acid transport protein [Lactobacillus plantarum JDM1] gb|ADN99045.1| branched-chain amino acid transport protein [Lactobacillus plantarum subsp. plantarum ST-III] emb|CCC79427.1| branched-chain (Leu, Ile & Val) amino acid transporter, LIVCS family [Lactobacillus plantarum WCFS1] Length = 449 Score = 35.0 bits (79), Expect = 4.6, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 10/132 (7%) Query: 45 IFGIFQRSHALLGDYV--AIDGFQLFGIALPLLVLACVGLVTKARPVFTIATHMSAGYA- 101 IF IF A G +V AI G + GI LPLL + +GL T+++ VF +AT++S YA Sbjct: 28 IFPIFLGQQA--GQHVGAAIIGLLITGIGLPLLGVIGMGL-TRSQGVFDLATNVSRSYAY 84 Query: 102 GFLLYAWHAGSPTTAQASLGPFAIPTGAGLYLMATILGACLLSFAITHL----LYFQAVG 157 F + + P A L A G +L + LL F++ L + G Sbjct: 85 VFTVLLYFTLGPLFAMPRLATTAFQIGLAPFLTTKLQPVVLLGFSVAFFVVTWLLARNPG 144 Query: 158 QEIGALARWLRP 169 + + + +WL P Sbjct: 145 KIMTYVGKWLTP 156 >ref|YP_004611197.1| hypothetical protein Mesop_2633 [Mesorhizobium opportunistum WSM2075] gb|AEH87103.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] Length = 178 Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 1 MNRLFKLQFLGPCVLFVATLGAELAALALQYSPTSELLWFVNLR---IFGIFQRSHALLG 57 M R L FL P ++ GA +A L P S +W++ L + +F + Sbjct: 1 MKRKPILLFLFPALVLAILAGARIATFLLGAYPASPTMWWIWLELRPLSTMFWQQVDFYL 60 Query: 58 DYVAIDGFQLFGIALPLLVLACVGLVTKARPVFTIATHMSAGYAGFLLYAWHAGSPTTAQ 117 D I F + AL + LAC + R F +A H++ + G ++ A S + Sbjct: 61 DSSMILDFTILAAALIVSWLACHA---RKRAPFFLANHLALLFVGLMI---AASSQSQTA 114 Query: 118 ASLGPFAIPTGAGLYLM 134 +++ F P+G LM Sbjct: 115 STIAAFTAPSGLQFSLM 131