BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0017.p         (155 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770142.1| hypothetical protein blr3502 [Bradyrhizobium ja...   287   4e-76
ref|YP_002362981.1| Tetratricopeptide TPR_2 repeat-containing pr...   190   6e-47
ref|YP_001237645.1| hypothetical protein BBta_1521 [Bradyrhizobi...   164   4e-39
ref|YP_002497839.1| TPR repeat-containing protein [Methylobacter...   147   5e-34
ref|YP_002498994.1| TPR repeat-containing protein [Methylobacter...   137   7e-31

>ref|NP_770142.1| hypothetical protein blr3502 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48767.1| blr3502 [Bradyrhizobium japonicum USDA 110]
          Length = 189

 Score =  287 bits (735), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 136/155 (87%), Positives = 149/155 (96%)

Query: 1   VRDAAVVAPGAPAGPDPVQEPTDVKYYPSDEPVRMGLEHYNRGNYGISQRYFKEAVEKAP 60
           +R+AA+VAP  P G DPVQEPTDVKYYPSDEPVR+GLEH+NRG+YG+SQRYFK+AVEK+P
Sbjct: 35  LREAAIVAPVDPPGGDPVQEPTDVKYYPSDEPVRLGLEHFNRGSYGLSQRYFKDAVEKSP 94

Query: 61  KDVTAWVGLAASYDKLRRFDLADQAYAQAIRLGGETVQILNDQGYSLMLRGNLSGARRKF 120
           KD+TAW+GLAASYD+LRRFDLADQAYAQAIRLGGETVQILNDQGYS MLRGNLS ARRKF
Sbjct: 95  KDLTAWIGLAASYDRLRRFDLADQAYAQAIRLGGETVQILNDQGYSYMLRGNLSAARRKF 154

Query: 121 EKAYSLDPGNPVIANNLELLNGSRKFIERPPNNQP 155
           EKAYSLDPGNPVIANNLELLNGSR+FIERPPNNQP
Sbjct: 155 EKAYSLDPGNPVIANNLELLNGSRRFIERPPNNQP 189


>ref|YP_002362981.1| Tetratricopeptide TPR_2 repeat-containing protein [Methylocella
           silvestris BL2]
 gb|ACK51619.1| Tetratricopeptide TPR_2 repeat protein [Methylocella silvestris
           BL2]
          Length = 173

 Score =  190 bits (482), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/134 (67%), Positives = 106/134 (79%)

Query: 18  VQEPTDVKYYPSDEPVRMGLEHYNRGNYGISQRYFKEAVEKAPKDVTAWVGLAASYDKLR 77
           +Q P DV YYPSDEP+R+G E +NRG YG +QRYF++AVEKAPKD  AW+GLAASYD LR
Sbjct: 40  IQRPGDVNYYPSDEPLRLGQEFFNRGIYGTAQRYFQDAVEKAPKDPKAWIGLAASYDHLR 99

Query: 78  RFDLADQAYAQAIRLGGETVQILNDQGYSLMLRGNLSGARRKFEKAYSLDPGNPVIANNL 137
           RFDLAD+AY +AI+L G T QILN+QGYS MLRG L  AR KF +A+ LDP NP I NN+
Sbjct: 100 RFDLADRAYGEAIKLAGPTTQILNNQGYSYMLRGKLILARDKFTEAFQLDPDNPTIQNNI 159

Query: 138 ELLNGSRKFIERPP 151
            LLN S KFI+R P
Sbjct: 160 NLLNSSYKFIQREP 173


>ref|YP_001237645.1| hypothetical protein BBta_1521 [Bradyrhizobium sp. BTAi1]
 gb|ABQ33739.1| hypothetical protein BBta_1521 [Bradyrhizobium sp. BTAi1]
          Length = 120

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 95/119 (79%), Gaps = 2/119 (1%)

Query: 35  MGLEHYNRGNYGISQRYFKEAVEKAPKDVTAWVGLAASYDKLRRFDLADQAYAQAIRLGG 94
           MG E++NRG YG +++YF+ AVEKAPKDV+AW+GLAASYD+L RFDLAD AY QAI+LGG
Sbjct: 1   MGEEYFNRGIYGTAEKYFQSAVEKAPKDVSAWIGLAASYDRLGRFDLADHAYGQAIKLGG 60

Query: 95  ETVQILNDQGYSLMLRGNLSGARRKFEKAYSLDPGNPVIANNLELLNGSRKFIER--PP 151
           ET QILN+ GYS MLRG L+ AR KF +AY  +P NP + NN+ LLN S +FIER  PP
Sbjct: 61  ETTQILNNLGYSYMLRGKLTAARTKFMEAYRREPDNPTVLNNINLLNSSYRFIERELPP 119


>ref|YP_002497839.1| TPR repeat-containing protein [Methylobacterium nodulans ORS 2060]
 gb|ACL57536.1| Tetratricopeptide TPR_2 repeat protein [Methylobacterium nodulans
           ORS 2060]
          Length = 161

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 93/129 (72%)

Query: 21  PTDVKYYPSDEPVRMGLEHYNRGNYGISQRYFKEAVEKAPKDVTAWVGLAASYDKLRRFD 80
           P D  Y  S EP R+G+  ++RGNY +++RYF++AVE+   D+ +W+GLAASYD+L+RFD
Sbjct: 33  PVDDVYVTSTEPDRLGIVQFDRGNYALAERYFRDAVERKQGDIDSWIGLAASYDRLKRFD 92

Query: 81  LADQAYAQAIRLGGETVQILNDQGYSLMLRGNLSGARRKFEKAYSLDPGNPVIANNLELL 140
           LAD+AYAQA+ LGG    +LN+QGYSLMLRG  + A  +F +A  LDP N +I NNL LL
Sbjct: 93  LADRAYAQALALGGPNASVLNNQGYSLMLRGRFNEAAARFHRAAELDPTNQLIVNNLALL 152

Query: 141 NGSRKFIER 149
           +  R+   R
Sbjct: 153 DAVRQKYRR 161


>ref|YP_002498994.1| TPR repeat-containing protein [Methylobacterium nodulans ORS 2060]
 gb|ACL58691.1| Tetratricopeptide TPR_2 repeat protein [Methylobacterium nodulans
           ORS 2060]
          Length = 181

 Score =  137 bits (344), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 92/126 (73%), Gaps = 1/126 (0%)

Query: 15  PDPVQEPTDVKYYPSDEPVRMGLEHYNRGNYGISQRYFKEAVEKAPKDVTAWVGLAASYD 74
           P P     D+ +  ++EP  +G +   RGNYG+++RYF++AVE  P D+ +W+GLAASYD
Sbjct: 45  PAPATGFEDM-FVNTNEPAIVGRKQLERGNYGLAERYFRQAVEANPSDLDSWIGLAASYD 103

Query: 75  KLRRFDLADQAYAQAIRLGGETVQILNDQGYSLMLRGNLSGARRKFEKAYSLDPGNPVIA 134
            L+RFDLAD+AY QA+RLGG   ++LN++GYS M+RG+ + AR  F +A +L+P N VI 
Sbjct: 104 NLKRFDLADRAYEQALRLGGRLARLLNNRGYSFMVRGDFARARTAFNEALALEPNNEVIL 163

Query: 135 NNLELL 140
           NN++LL
Sbjct: 164 NNMKLL 169