BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0013.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770136.1| hypothetical protein blr3496 [Bradyrhizobium ja... 419 e-115 ref|YP_004284490.1| putative type II secretion system protein [A... 169 7e-40 ref|YP_001235135.1| type II secretion system protein [Acidiphili... 165 7e-39 ref|ZP_08732121.1| type II secretion system protein [Vibrio nigr... 138 9e-31 ref|YP_001601956.1| type II secretion system protein [Gluconacet... 134 2e-29 >ref|NP_770136.1| hypothetical protein blr3496 [Bradyrhizobium japonicum USDA 110] dbj|BAC48761.1| blr3496 [Bradyrhizobium japonicum USDA 110] Length = 302 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/297 (68%), Positives = 247/297 (83%), Gaps = 3/297 (1%) Query: 1 MTASLGLVGLAIAAATATVLLLIREMHFRALDTRVSNAVLGIPDQSVRSRDVVGWFSSLG 60 MT LGLV LA+AA +AT LL+IRE+H R +D RV+NAV+G + +DV GWFS LG Sbjct: 1 MTFGLGLVALAVAAGSATSLLIIREIHIRTVDARVANAVMGGAGGATPFQDVTGWFSWLG 60 Query: 61 ARYRRFYAEENIEELRTILQAAGFNHHRVLPIWIGVKIFSMFACPIVAFLVAQVLD---A 117 RYRRFYAEEN+++LRTILQ++GFNH R LP WIGVK +MF CPI+A VAQ+ Sbjct: 61 TRYRRFYAEENLDQLRTILQSSGFNHRRALPTWIGVKAVAMFLCPIIAGCVAQLFAKSMT 120 Query: 118 NALVFTLVGLVLGIMGPRLIMMVLKRRFDAAIRLGMPDAIDLLVVCSEAGMGLESALQRV 177 + LVFTL+G+++GI+GPRLI+ VLKRRFDAAIR+G PD IDLLVVCSEAGMGLES L RV Sbjct: 121 DVLVFTLMGVMVGILGPRLILAVLKRRFDAAIRVGTPDMIDLLVVCSEAGMGLESGLARV 180 Query: 178 AAEIVQTNPRWARVLTDLLDDLRVLPNRFDAFEKMGARSEGLRRFGTMISQSLQYGTPLS 237 A E+ +TNP ARVL LLDDLR+LPNR DAF+K+G S+GLRRFGTM++QSLQYGTP+ Sbjct: 181 AQEMSETNPPMARVLHCLLDDLRILPNRSDAFDKLGTTSDGLRRFGTMVAQSLQYGTPVG 240 Query: 238 QALRSIAADLRRERITKLEEKAHKLGAKLTVPMVLFLLPAMFVILGGGPMLNLIKAF 294 QALR+IA DLRRERITKLEE+AHKLGAKLT+PMVLFLLPAMFV+LGG P+L+L+++F Sbjct: 241 QALRNIAVDLRRERITKLEERAHKLGAKLTIPMVLFLLPAMFVVLGGSPILHLVRSF 297 >ref|YP_004284490.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] ref|ZP_08634473.1| Type II secretion system protein [Acidiphilium sp. PM] dbj|BAJ81608.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] gb|EGO93756.1| Type II secretion system protein [Acidiphilium sp. PM] Length = 307 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 162/259 (62%), Gaps = 7/259 (2%) Query: 41 GIPDQSVRSRDVVGWFSSLGARYRRFYAEENIEELRTILQAAGFNHHRVLPIWIGVKIFS 100 G P Q + R V+G L + +EELR L+ AG L +++G K+ S Sbjct: 51 GEPAQPIHVRIVMGL--GLAVARSGLLSPRTLEELRHTLRMAGIRDKGALALFVGTKLLS 108 Query: 101 MFACPIVAFLVAQVLD---ANALVFTLVGLVLGIMGPRLIMMVLKRRFDAAIRLGMPDAI 157 + +++ L+++ L +A++ +VG + G++ P +I+ ++RF + G+ DA+ Sbjct: 109 LTGLSVLSLLMSRFLHMTAGHAVIAAVVGAIGGLLLPDIIIQQRRKRFIQKVEGGLADAL 168 Query: 158 DLLVVCSEAGMGLESALQRVAAEIVQTNPRWARVLTDLLDDLRVLPNRFDAFEKMGARS- 216 DL+V+C++AG+ LESAL RVA E+ T+P A+ T ++R+ N D+ +G R+ Sbjct: 169 DLMVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQEMRIGGNIRDSLNALGVRTG 228 Query: 217 -EGLRRFGTMISQSLQYGTPLSQALRSIAADLRRERITKLEEKAHKLGAKLTVPMVLFLL 275 + L+R + + Q+LQYGTPL+QALR+++++LR+E++T+ EE+A +L LT+PM++F+L Sbjct: 229 LDSLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRFEERAARLPVLLTLPMIIFIL 288 Query: 276 PAMFVILGGGPMLNLIKAF 294 P +F+++GG +L L+ +F Sbjct: 289 PCVFLVVGGPAVLKLLASF 307 >ref|YP_001235135.1| type II secretion system protein [Acidiphilium cryptum JF-5] gb|ABQ31216.1| type II secretion system protein [Acidiphilium cryptum JF-5] Length = 307 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 161/259 (62%), Gaps = 7/259 (2%) Query: 41 GIPDQSVRSRDVVGWFSSLGARYRRFYAEENIEELRTILQAAGFNHHRVLPIWIGVKIFS 100 G Q + R V+G L + +EELR L+ AG L +++G K+ S Sbjct: 51 GEAAQPIHVRIVMGL--GLAVARSGLLSPRTLEELRHTLRMAGIRDKGALALFVGTKLLS 108 Query: 101 MFACPIVAFLVAQVLD---ANALVFTLVGLVLGIMGPRLIMMVLKRRFDAAIRLGMPDAI 157 + +++ L+++ L +A++ +VG + G++ P +I+ ++RF + G+ DA+ Sbjct: 109 LTGLSVLSLLMSRFLHMTAGHAVIAAVVGAIGGLLLPDIIIQQRRKRFIQKVEGGLADAL 168 Query: 158 DLLVVCSEAGMGLESALQRVAAEIVQTNPRWARVLTDLLDDLRVLPNRFDAFEKMGARS- 216 DL+V+C++AG+ LESAL RVA E+ T+P A+ T ++R+ N D+ +G R+ Sbjct: 169 DLMVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQEMRIGGNIRDSLNALGVRTG 228 Query: 217 -EGLRRFGTMISQSLQYGTPLSQALRSIAADLRRERITKLEEKAHKLGAKLTVPMVLFLL 275 + L+R + + Q+LQYGTPL+QALR+++++LR+E++T+ EE+A +L LT+PM++F+L Sbjct: 229 LDSLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRFEERAARLPVLLTLPMIIFIL 288 Query: 276 PAMFVILGGGPMLNLIKAF 294 P +F+++GG +L L+ +F Sbjct: 289 PCVFLVVGGPAVLKLLASF 307 >ref|ZP_08732121.1| type II secretion system protein [Vibrio nigripulchritudo ATCC 27043] gb|EGU60271.1| type II secretion system protein [Vibrio nigripulchritudo ATCC 27043] Length = 299 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 155/282 (54%), Gaps = 23/282 (8%) Query: 25 EMHFRALDTRVSNAVLGIPDQS--------VRSRDVVGWFSSLGARYRRFYAEENIEELR 76 E R L+TRV +A L +P Q + S+ + W + +E++ +LR Sbjct: 22 EKKRRQLNTRV-HATLHLPKQESVLIQKLRLGSQRLANWME------KHLVSEKDKSQLR 74 Query: 77 TILQAAGFNHHRVLPIWIGVKIFSMFACPIV--AFLVAQVLDANA---LVFTLVGLVLGI 131 +L +AG+ H R L ++ +K SM ++ +F V+++NA LV +G G+ Sbjct: 75 NLLLSAGYFHSRALAWFLLIKFGSMAIVLLIGASFFHLGVIESNAKSILVLVFLGFGAGV 134 Query: 132 MGPRLIMMVLKRRFDAAIRLGMPDAIDLLVVCSEAGMGLESALQRVAAEIVQTNPRWARV 191 +G R++ R + R PDA+D+LV+C+EAG ++ AL +V+ +I P A Sbjct: 135 IGERVVQSQATSRQEKISRF-CPDAMDMLVICAEAGTSIDQALIKVSQKISPICPEIAHE 193 Query: 192 LTDLLDDLRVLPNRFDAFEKMGARS--EGLRRFGTMISQSLQYGTPLSQALRSIAADLRR 249 ++D+LRVLPNR AF+ + RS E L+ T + Q++ YG+ +++ LR IA+D R Sbjct: 194 FRLVVDELRVLPNRGQAFKNLAERSQVEELKMLATTLLQAMNYGSSIAKTLRIIASDTRD 253 Query: 250 ERITKLEEKAHKLGAKLTVPMVLFLLPAMFVILGGGPMLNLI 291 +R+ +EEKA K+ AK+ +P+++ +L V++ ML LI Sbjct: 254 KRLLGMEEKAAKIPAKMGLPLIILVLFPTLVLIAAPAMLKLI 295 >ref|YP_001601956.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] emb|CAP55654.1| putative type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 313 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 150/261 (57%), Gaps = 12/261 (4%) Query: 45 QSVRSRDVVGWFSSLGARYRRFYAE------ENIEELRTILQAAGFNHHRVLPIWIGVKI 98 +VR+ D WF L R F+A + + EL+ L + F R LP++IG K Sbjct: 52 NAVRTIDGRIWFRFL-ERIGVFFARSGLLSAKTLGELQQTLSSVSFLGTRFLPVFIGAKA 110 Query: 99 FSMFACPIVAFLVAQVLDANALVFTLVGL---VLGIMGPRLIMMVLKRRFDAAIRLGMPD 155 ++ +V +L+ + ++ +++ ++ L V+G++ P ++ ++ + + G+PD Sbjct: 111 VTLVVGIVVGWLIHEETRSDGMLYLVLSLGAPVVGLLAPDFVVKRMQAHYLRNVDQGIPD 170 Query: 156 AIDLLVVCSEAGMGLESALQRVAAEIVQTNPRWARVLTDLLDDLRVLPNRFDAFEKMGAR 215 A+D+LV+C+EAG+ +E+A+ RV E+ N A ++ V +R D F G R Sbjct: 171 ALDMLVICAEAGLPIEAAIGRVGREMTAVNRSVANEFRLTAQEMGVASDRRDVFLHFGER 230 Query: 216 SE--GLRRFGTMISQSLQYGTPLSQALRSIAADLRRERITKLEEKAHKLGAKLTVPMVLF 273 + +RR G+ ++Q+LQ G+ ++QALR ++ ++R++ +T+ E +A +L LT+PM+LF Sbjct: 231 TNLSSMRRIGSALNQTLQAGSSVTQALRVLSVEMRKDALTEYEARAARLPVLLTLPMILF 290 Query: 274 LLPAMFVILGGGPMLNLIKAF 294 +LP +F+++GG + ++ A Sbjct: 291 ILPVVFLVVGGPAAVTVMHAL 311