BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0012.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium ja... 376 e-102 ref|YP_001235136.1| type II secretion system protein [Acidiphili... 125 1e-26 ref|YP_002277830.1| type II secretion system protein [Gluconacet... 121 1e-25 ref|YP_001601955.1| type II secretion system protein [Gluconacet... 121 1e-25 ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter cresc... 119 7e-25 >ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium japonicum USDA 110] dbj|BAC48760.1| blr3495 [Bradyrhizobium japonicum USDA 110] Length = 338 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 210/310 (67%), Positives = 241/310 (77%) Query: 1 MIPVSVIVAVLGLLMCAACTTLWLDARQRRIDRQVAVALPTSRSADLPSIRRAETGSRSE 60 M+P SVIV VL L MCAA T LWLDAR+RRIDR++AVALP S A+L SIRR ETGS++ Sbjct: 29 MMPESVIVTVLALAMCAAATALWLDARERRIDRRLAVALPASHPANLLSIRRTETGSQTL 88 Query: 61 FLQRLAGYRAGVPYALHPAYVVMAGFFTGTVTFYAVSLLGFSSAKVSIASAFVAIMTVRG 120 FL RL Y +P HPAYV++AG F G T YA+S LG+S IA+A AI +RG Sbjct: 89 FLHRLVNYSPEIPNIWHPAYVLVAGAFAGAATLYAISQLGYSILYGGIAAAIAAISVMRG 148 Query: 121 LFKWQQRRFTDLLFRQLPDAVQLVTSTVRSGLPVHEAFRTIAREMPQPTAGQFAIACSEL 180 LF WQQRR LFRQLPDA+QLVTSTVRSGLPVHEAFR +AREMPQPTAGQFAI C+E+ Sbjct: 149 LFGWQQRRVALQLFRQLPDAIQLVTSTVRSGLPVHEAFRALAREMPQPTAGQFAIVCNEV 208 Query: 181 NLGRPPEEVVEGIYRRTDVTEYGIFAVTLAVQLKSGGSLAETLQTLAETVRQRVAMAARA 240 NLGRPP E VEG+YRRT V EY +FAVTLAVQLKSGGSLAETLQ L +TVRQRVA+AARA Sbjct: 209 NLGRPPAEAVEGVYRRTQVAEYAMFAVTLAVQLKSGGSLAETLQNLGDTVRQRVALAARA 268 Query: 241 KALAAEVIFSSRALVAAPFIVAGVIYALNPEMISVLFQDPTGNTMLGYAVTSVILGHFVI 300 KALA EVIFSSRAL +P I GV+YA NP+ + +LF DP GN +L YAV SV++G VI Sbjct: 269 KALAGEVIFSSRALTISPLIGGGVLYASNPQTVDLLFTDPVGNKLLAYAVASVLVGALVI 328 Query: 301 RWMIRRNTAL 310 WM+RR T L Sbjct: 329 SWMVRRETQL 338 >ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5] ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] ref|ZP_08634472.1| Type II secretion system protein [Acidiphilium sp. PM] gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5] dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] gb|EGO93755.1| Type II secretion system protein [Acidiphilium sp. PM] Length = 319 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 125 QQRRFTDLLFRQLPDAVQLVTSTVRSGLPVHEAFRTIAREMPQPTAGQFAIACSELNLGR 184 RR T LL Q PDA+ + VR G+PV EA R ++++MP PT+ +F ++ +G Sbjct: 136 HARRATALL-NQFPDALATIVRCVRVGIPVQEALRVVSQDMPAPTSREFGRIADQVAIGT 194 Query: 185 PPEEVVEGIYRRTDVTEYGIFAVTLAVQLKSGGSLAETLQTLAETVRQRVAMAARAKALA 244 P E + + R + EYG FA +++Q + GG LA+TL+ LAE +R+RVAM AR ALA Sbjct: 195 PLELALRQMADRAHLAEYGFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALA 254 Query: 245 AEVIFSSRALVAAPFIVAGVIYALNPEMISVLFQDPTGNTMLGYAVTSVILGHFVIRWMI 304 +E S+ L P + A I + P + VLF GN +L AV + G V+R +I Sbjct: 255 SEARTSALILGIIPLVAALAIEVIQPAYLRVLFVTHGGNIVLAAAVGLLAGGALVMREII 314 Query: 305 RRN 307 RR+ Sbjct: 315 RRS 317 >ref|YP_002277830.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gb|ACI53215.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 317 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 108/186 (58%) Query: 122 FKWQQRRFTDLLFRQLPDAVQLVTSTVRSGLPVHEAFRTIAREMPQPTAGQFAIACSELN 181 F+ RR+ LF+QLPDA+ ++ ++R G+P+ A + +E PTA +F + ++ Sbjct: 130 FRIVDRRYAAKLFQQLPDALGMIVRSLRVGIPLSRALIIVGQEAEYPTADEFRMISQDVA 189 Query: 182 LGRPPEEVVEGIYRRTDVTEYGIFAVTLAVQLKSGGSLAETLQTLAETVRQRVAMAARAK 241 +G+ + + + RT + EY FA +A+Q ++GG+LA+ L + A+ +RQR+A R Sbjct: 190 VGKSLGDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGH 249 Query: 242 ALAAEVIFSSRALVAAPFIVAGVIYALNPEMISVLFQDPTGNTMLGYAVTSVILGHFVIR 301 ALA+E S L PF + G++ +NP+ ++V G+ +LG + + LG +R Sbjct: 250 ALASEARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMR 309 Query: 302 WMIRRN 307 ++++R+ Sbjct: 310 FIMKRS 315 >ref|YP_001601955.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] emb|CAP55653.1| putative type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 319 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 108/186 (58%) Query: 122 FKWQQRRFTDLLFRQLPDAVQLVTSTVRSGLPVHEAFRTIAREMPQPTAGQFAIACSELN 181 F+ RR+ LF+QLPDA+ ++ ++R G+P+ A + +E PTA +F + ++ Sbjct: 132 FRIVDRRYAAKLFQQLPDALGMIVRSLRVGIPLSRALIIVGQEAEYPTADEFRMISQDVA 191 Query: 182 LGRPPEEVVEGIYRRTDVTEYGIFAVTLAVQLKSGGSLAETLQTLAETVRQRVAMAARAK 241 +G+ + + + RT + EY FA +A+Q ++GG+LA+ L + A+ +RQR+A R Sbjct: 192 VGKNLGDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGH 251 Query: 242 ALAAEVIFSSRALVAAPFIVAGVIYALNPEMISVLFQDPTGNTMLGYAVTSVILGHFVIR 301 ALA+E S L PF + G++ +NP+ ++V G+ +LG + + LG +R Sbjct: 252 ALASEARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMR 311 Query: 302 WMIRRN 307 ++++R+ Sbjct: 312 FIMKRS 317 >ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15] ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000] gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15] gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15] gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000] Length = 325 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 4/185 (2%) Query: 121 LFKWQQRRFTDLLFRQLPDAVQLVTSTVRSGLPVHEAFRTIAREMPQPTAGQFAIACSEL 180 L K + ++FT+ DAV ++ ++SGLPVH+ + I +E P+P AG+F I + Sbjct: 142 LAKGRTQKFTE----AFADAVDIIVRGIKSGLPVHDCLKIIGKECPEPLAGEFRILTENV 197 Query: 181 NLGRPPEEVVEGIYRRTDVTEYGIFAVTLAVQLKSGGSLAETLQTLAETVRQRVAMAARA 240 +G P + +E +Y R E FA+ LA+Q K+GG+LAE L L+ +R R M + Sbjct: 198 AMGVPMDAALEKMYERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSAVLRSRKLMKEKI 257 Query: 241 KALAAEVIFSSRALVAAPFIVAGVIYALNPEMISVLFQDPTGNTMLGYAVTSVILGHFVI 300 KAL+AE + S+ + P V +I +P ++ +F DP G+ ML + + +G FV+ Sbjct: 258 KALSAEAVASAFIIGCLPPGVVTLISVTSPAYMAPMFTDPRGHLMLLASAIWMSIGIFVM 317 Query: 301 RWMIR 305 R MI Sbjct: 318 RNMIN 322