BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0010.p (398 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770133.1| hypothetical protein blr3493 [Bradyrhizobium ja... 658 0.0 ref|YP_002277828.1| putative pilus assembly protein [Gluconaceto... 197 3e-48 ref|YP_001601953.1| pilus assembly protein [Gluconacetobacter di... 197 3e-48 ref|YP_001237639.1| putative response regulator receiver [Bradyr... 187 2e-45 ref|YP_002362975.1| response regulator receiver protein [Methylo... 182 1e-43 >ref|NP_770133.1| hypothetical protein blr3493 [Bradyrhizobium japonicum USDA 110] dbj|BAC48758.1| blr3493 [Bradyrhizobium japonicum USDA 110] Length = 481 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/399 (86%), Positives = 373/399 (93%), Gaps = 2/399 (0%) Query: 1 MNLAMVSPPE-AVSVVARDRVVCFVDDEISAAALRKGLEGSNLAIRRGTIRNAIRMLESD 59 +N+A+VS PE A SV+AR+R+VCFV+DE+SAAALRKGLEGSN++IRRGTIRNAIRMLE+D Sbjct: 84 VNIAVVSSPEEATSVLARNRIVCFVNDELSAAALRKGLEGSNISIRRGTIRNAIRMLETD 143 Query: 60 TELFALVVDISGIDDPFAELERLASVCPPDVRVSLVGESREITFYRELMEIGITEYLPKP 119 T++ ALV DISGIDDPFAELERLA VCPPDVRV L+GESREITFYRELME+G+TEYLPKP Sbjct: 144 TDISALVTDISGIDDPFAELERLAGVCPPDVRVVLIGESREITFYRELMELGLTEYLPKP 203 Query: 120 LTRDTVMDLLRPKLLGDVPTAQADRGGHVISICGAQGGAGATSIAINLALQLAEATKAKV 179 +TRD V+D LRPKLLGDV +Q DRGGHVISICGAQGGAGATSIAINLALQLAE TKAKV Sbjct: 204 ITRDMVLDQLRPKLLGDVAHSQPDRGGHVISICGAQGGAGATSIAINLALQLAETTKAKV 263 Query: 180 ALLDLHLQNGETTVMLGVQPGPGLRIALENPLRADTLFLERAAIDVNERVCLISADEELD 239 ALLDLHLQ GET VMLGV+PGPGLRIALENP+RADTLFLERAAI+VNERVCLISADEELD Sbjct: 264 ALLDLHLQAGETAVMLGVRPGPGLRIALENPMRADTLFLERAAIEVNERVCLISADEELD 323 Query: 240 AQLDITEAGVRHVLGLLRQRFNYIVVDVPVPFGPSMYPVIKLSRHVLVLLEAEVTGLRNA 299 AQLDITEAGVRHVLGLLRQRFNYIVVDVPVPF PS++PVI LSRHVLVLLEAEVTGLRNA Sbjct: 324 AQLDITEAGVRHVLGLLRQRFNYIVVDVPVPFPPSIHPVITLSRHVLVLLEAEVTGLRNA 383 Query: 300 HALRNAVTNIAGKDRVFTLLNRANRPGGLPRATIVKALGAEPDMVIPDLGKGMTQAVNLG 359 HALR AVTNIAGKDRVFTLLNRA+RPGGLPRA IVKALGAEPDMV+PDLGKGMTQAVNLG Sbjct: 384 HALRAAVTNIAGKDRVFTLLNRADRPGGLPRAAIVKALGAEPDMVVPDLGKGMTQAVNLG 443 Query: 360 IPALKHVKGLRRHLAPIVREIAGVGGDKRKGRWRRLLRL 398 IPALKHV LRRHLAPIVREI G+G + RKGR RRLL L Sbjct: 444 IPALKHVSALRRHLAPIVREITGLGAE-RKGRLRRLLGL 481 >ref|YP_002277828.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] gb|ACI53213.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] Length = 413 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/388 (32%), Positives = 203/388 (52%), Gaps = 11/388 (2%) Query: 20 VVCFVDDEISAAALRK---GLEGSNLAIRRGTIRNAIRMLESDTELFALVVDISGIDDPF 76 ++ V D + + LR+ L + + R + + A+ L S L++D+SG D P Sbjct: 22 ILALVSDAFTESLLRECLADLHHQDSTVMRMSCQQAVEYLRSHETPGILILDVSGEDQPL 81 Query: 77 AELERLASVCPPDVRVSLVGESREITFYRELME-IGITEYLPKPLTRDTVMDLLRPKLLG 135 L LA+V PDV V L+G+ + FYR++ G++EYL KPL R P ++G Sbjct: 82 TTLTELANVVSPDVTVLLIGDREDANFYRQVTRGFGVSEYLYKPLNRSMATRFFGPVIMG 141 Query: 136 DVPTAQADRGGHVISICGAQGGAGATSIAINLALQLAEATKAKVALLDLHLQNGETTVML 195 A RGG VI++ G +GG GAT+I NL LAE K ++D L G+T ++L Sbjct: 142 GEVAPDAPRGGRVITVSGVRGGVGATTIMTNLGWYLAEEAKRHTVIVDFDLTTGKTALLL 201 Query: 196 GVQPGPGLRIALENPLRADTLFLERAAIDVNERVCLISADEELDAQLDITEAGVRHVLGL 255 G Q GLR A+E P R DTLFLER+A V +R+ L+S+ +L + + A +RH++ Sbjct: 202 GTQSNNGLRSAMETPDRVDTLFLERSAQLVGDRLNLLSSLSDLQTRPKTSAAAMRHLMAT 261 Query: 256 LRQRFNYIVVDVPVPFGPSMYPVIKLSRHVLVLLEAEVTGLRNAHALRNAVTNIAGKDRV 315 + +R+N+++ + P+ + ++ ++ +++L+ + +R+ + + + Sbjct: 262 VTKRYNFVLAEAPLCPDETEAALLDVTFQRIIVLDPTLAAVRDTLRIMPLLQTRGQGSQP 321 Query: 316 FTLLNRANRPGGLPRATIVKALGAEPDMVIPDLGKGMTQAVNLGIPALKHVKGLRRHLAP 375 +LN RPG L +VK+LG +PD+VIP L K + A GIPA+K K R + Sbjct: 322 LVVLNGLGRPGTLTLDEVVKSLGDKPDVVIPFLPKPLGTAEVDGIPAVKTCKEFRSAIVK 381 Query: 376 IVREIAGVGGDK-------RKGRWRRLL 396 + E A V D+ G +RRL Sbjct: 382 LTHEAASVVADQPHHAPGFSSGLFRRLF 409 >ref|YP_001601953.1| pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] emb|CAP55651.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] Length = 500 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/388 (32%), Positives = 203/388 (52%), Gaps = 11/388 (2%) Query: 20 VVCFVDDEISAAALRK---GLEGSNLAIRRGTIRNAIRMLESDTELFALVVDISGIDDPF 76 ++ V D + + LR+ L + + R + + A+ L S L++D+SG D P Sbjct: 109 ILALVSDAFTESLLRECLADLHHQDSTVMRMSCQQAVEYLRSHETPGILILDVSGEDQPL 168 Query: 77 AELERLASVCPPDVRVSLVGESREITFYRELME-IGITEYLPKPLTRDTVMDLLRPKLLG 135 L LA+V PDV V L+G+ + FYR++ G++EYL KPL R P ++G Sbjct: 169 TTLTELANVVSPDVTVLLIGDREDANFYRQVTRGFGVSEYLYKPLNRSMATRFFGPVIMG 228 Query: 136 DVPTAQADRGGHVISICGAQGGAGATSIAINLALQLAEATKAKVALLDLHLQNGETTVML 195 A RGG VI++ G +GG GAT+I NL LAE K ++D L G+T ++L Sbjct: 229 GEVAPDAPRGGRVITVSGVRGGVGATTIMTNLGWYLAEEAKRHTVIVDFDLTTGKTALLL 288 Query: 196 GVQPGPGLRIALENPLRADTLFLERAAIDVNERVCLISADEELDAQLDITEAGVRHVLGL 255 G Q GLR A+E P R DTLFLER+A V +R+ L+S+ +L + + A +RH++ Sbjct: 289 GTQSNNGLRSAMETPDRVDTLFLERSAQLVGDRLNLLSSLSDLQTRPKTSAAAMRHLMAT 348 Query: 256 LRQRFNYIVVDVPVPFGPSMYPVIKLSRHVLVLLEAEVTGLRNAHALRNAVTNIAGKDRV 315 + +R+N+++ + P+ + ++ ++ +++L+ + +R+ + + + Sbjct: 349 VTKRYNFVLAEAPLCPDETEAALLDVTFQRIIVLDPTLAAVRDTLRIMPLLQTRGQGSQP 408 Query: 316 FTLLNRANRPGGLPRATIVKALGAEPDMVIPDLGKGMTQAVNLGIPALKHVKGLRRHLAP 375 +LN RPG L +VK+LG +PD+VIP L K + A GIPA+K K R + Sbjct: 409 LVVLNGLGRPGTLTLDEVVKSLGDKPDVVIPFLPKPLGTAEVDGIPAVKTCKEFRSAIVK 468 Query: 376 IVREIAGVGGDK-------RKGRWRRLL 396 + E A V D+ G +RRL Sbjct: 469 LTHEAASVVADQPHHAPGFSSGLFRRLF 496 >ref|YP_001237639.1| putative response regulator receiver [Bradyrhizobium sp. BTAi1] gb|ABQ33733.1| putative Response regulator receiver [Bradyrhizobium sp. BTAi1] Length = 400 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 118/365 (32%), Positives = 181/365 (49%), Gaps = 8/365 (2%) Query: 23 FVDDEISAAALRKGLEGSNLAI-----RRGTIRNAIRMLESDTELFALVVDISGIDDPFA 77 FV D+ S +R+ L S+L I ++GT+ A L + L VD+SG+DDP Sbjct: 24 FVSDQDSEGVIRQSL--SDLGIDDAEFKKGTVETATAYLATQPSPRLLFVDLSGVDDPVV 81 Query: 78 ELERLASVCPPDVRVSLVGESREITFYRELMEIGITEYLPKPLTRDTVMDLLRPKLLGDV 137 + LA C P V V ++G+ +I YR+L G++EY KPL D V L Sbjct: 82 HIYELADRCEPSVSVVVIGDRNDIILYRDLKNAGVSEYFFKPLIIDAVKATCNRILNDGR 141 Query: 138 PTAQADRGGHVISICGAQGGAGATSIAINLALQLAEATKAKVALLDLHLQNGETTVMLGV 197 + + R G ++ + G +GG GAT+IA N A LAE + V L+DL L NG+ + Sbjct: 142 EHSPSQRTGKLVFVIGVRGGVGATTIAANAAWYLAEKKQRWVMLVDLDLHNGDAALQFDS 201 Query: 198 QPGPGLRIALENPLRADTLFLERAAIDVNERVCLISADEELDAQLDITEAGVRHVLGLLR 257 PG L A E P R D LFLER I V ER+ L+++ E L + E V +LG L Sbjct: 202 TPGHALSEAFEKPERVDRLFLERGTIHVRERLDLLASLEPLSESTTLAEGAVLSLLGKLL 261 Query: 258 QRFNYIVVDVPVPFGPSMYPVIKLSRHVLVLLEAEVTGLRNAHALRNAVTNIAGKDRVFT 317 R+ ++ VD+P + V+ +++ +A + R R + + + R Sbjct: 262 HRYRFVFVDLPSIVALGLAQVLHQPSVCVLVSDASLASARELSRWREWIGPNSAERRTLH 321 Query: 318 LLNRANRPGGLPRATIVKALGAEPDMVIPDLGKGMTQAVNLGIPALKHVKGLRRHLAPIV 377 +LN G LP+A ++A+G PD++IP + + A G+ A + L R LA ++ Sbjct: 322 VLNMNGADGALPQAEFIRAVGQAPDIIIP-YDRDIAIASKFGVKATRKCAVLNRGLARLL 380 Query: 378 REIAG 382 R+ G Sbjct: 381 RDFTG 385 >ref|YP_002362975.1| response regulator receiver protein [Methylocella silvestris BL2] gb|ACK51613.1| response regulator receiver protein [Methylocella silvestris BL2] Length = 389 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 180/363 (49%), Gaps = 5/363 (1%) Query: 23 FVDDEISAAALRKGLEG---SNLAIRRGTIRNAIRMLESDTELFALVVDISGIDDPFAEL 79 FV D S +R+ L S+ G I A L + T L+VD+SG+ DP + + Sbjct: 14 FVSDHDSEGVIRQSLNDLGVSDAEFVTGNIETAAAALATQTSPKLLIVDVSGVADPVSRI 73 Query: 80 ERLASVCPPDVRVSLVGESREITFYRELMEIGITEYLPKPLTRDTVMDLLRPKLLGDVPT 139 + LA C PDV V ++G+ +I YR L G+ EY KPL RD V L G+ Sbjct: 74 DELAERCEPDVGVIVIGDRNDIILYRNLKNAGVVEYFFKPLVRDVVKRTCNNVLTGNNKQ 133 Query: 140 AQADRGGHVISICGAQGGAGATSIAINLALQLAEATKAKVALLDLHLQNGETTVMLGVQP 199 + R +I + G +GG GAT+IA N A LAE + V L DL L +G+ + L V P Sbjct: 134 STP-RAAKLIFVVGLRGGVGATTIATNAAWYLAEVRQRWVMLADLDLYSGDAALQLDVSP 192 Query: 200 GPGLRIALENPLRADTLFLERAAIDVNERVCLISADEELDAQLDITEAGVRHVLGLLRQR 259 LR A P R D LF+ER I ER+ L+++ E L I E+ V +LG L+QR Sbjct: 193 SHALREAFAKPERVDKLFIERGRIHAAERLDLLASLESLGEPFTIDESAVLSLLGKLQQR 252 Query: 260 FNYIVVDVPVPFGPSMYPVIKLSRHVLVLLEAEVTGLRNAHALRNAVTNIAGKDRVFTLL 319 + ++ VD+PV + V+ L++ + R R + + R +L Sbjct: 253 YRFVFVDLPVRAAIGIIRVLHQPSTCLLVSNGSLASAREVARWRARIGANTPERRTLHIL 312 Query: 320 NRANRPGGLPRATIVKALGAEPDMVIPDLGKGMTQAVNLGIPALKHVKGLRRHLAPIVRE 379 N + PG LP+A ++A G PD++IP + + A N GI A + L + + ++R+ Sbjct: 313 NMSGAPGSLPKAEFLRAAGQSPDIIIP-YDREIAVASNRGITATQKCASLNQGIVRLLRD 371 Query: 380 IAG 382 + G Sbjct: 372 LMG 374