BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0008.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770131.1| hypothetical protein blr3491 [Bradyrhizobium ja...   193   9e-48
ref|YP_001236142.1| peptidase A24A, prepilin type IV [Acidiphili...    88   5e-16
ref|YP_004285606.1| putative peptidase A24A [Acidiphilium multiv...    88   5e-16
ref|YP_001601950.1| hypothetical protein GDI_1705 [Gluconacetoba...    70   1e-10
ref|YP_001265345.1| peptidase A24A, prepilin type IV [Sphingomon...    59   3e-07

>ref|NP_770131.1| hypothetical protein blr3491 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48756.1| blr3491 [Bradyrhizobium japonicum USDA 110]
          Length = 171

 Score =  193 bits (490), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 94/117 (80%), Positives = 106/117 (90%)

Query: 3   VAQSLIVAAILFLLLFAIYMRGAIGGGDVKLLVALAIGLPLTGVIELLTITSLAGGVLAL 62
           +A+SLI AAILFLLLF +Y RG IGGGDVKLL ALAIG PLTGVI+LLT+T+LAGG+LAL
Sbjct: 55  IAESLIAAAILFLLLFVLYTRGGIGGGDVKLLTALAIGFPLTGVIQLLTVTALAGGILAL 114

Query: 63  SHLVMRNLPYPKLAPAGSSFARRVYAVERWRHLRHAPLPYGVAIACGGIWTILSKGI 119
            HL+MR LPYP+LAPAGSS  RRVYAVERWRHLRHAPLPYGVA+ACGGIWTI S+G+
Sbjct: 115 VHLLMRLLPYPRLAPAGSSLMRRVYAVERWRHLRHAPLPYGVAVACGGIWTIFSRGL 171


>ref|YP_001236142.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5]
 gb|ABQ32223.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5]
          Length = 167

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 78/111 (70%), Gaps = 2/111 (1%)

Query: 6   SLIVAAILFLLLFAIYMRGAIGGGDVKLLVALAIGLPLTGVIELLTITSLAGGVLALSHL 65
           SL VAA+LF +LFA+Y+R +IGGGDVKL+VALA+G     +   L  T LAGG+LAL++L
Sbjct: 53  SLAVAAVLFAVLFAVYLRRSIGGGDVKLIVALALGYGPLALAGFLFATVLAGGILALAYL 112

Query: 66  VMR-NLPYPKLAPAGSSFARRVYAVERWRHLRHAPLPYGVAIACGGIWTIL 115
            +R   P P+ A   +S  RR++AVERWR  R   LPYG+AIA G  WT+L
Sbjct: 113 ALRVAAPPPRPAGHDASLLRRLWAVERWRAHRSG-LPYGIAIAAGAAWTML 162


>ref|YP_004285606.1| putative peptidase A24A [Acidiphilium multivorum AIU301]
 dbj|BAJ82724.1| putative peptidase A24A [Acidiphilium multivorum AIU301]
          Length = 167

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 78/111 (70%), Gaps = 2/111 (1%)

Query: 6   SLIVAAILFLLLFAIYMRGAIGGGDVKLLVALAIGLPLTGVIELLTITSLAGGVLALSHL 65
           SL VAA+LF +LFA+Y+R +IGGGDVKL+VALA+G     +   L  T LAGG+LAL++L
Sbjct: 53  SLAVAAVLFAVLFAVYLRRSIGGGDVKLIVALALGYGPLALAGFLFATVLAGGILALAYL 112

Query: 66  VMR-NLPYPKLAPAGSSFARRVYAVERWRHLRHAPLPYGVAIACGGIWTIL 115
            +R   P P+ A   +S  RR++AVERWR  R   LPYG+AIA G  WT+L
Sbjct: 113 ALRVAAPPPRPAGHDASLLRRLWAVERWRAHRSG-LPYGIAIAAGAAWTML 162


>ref|YP_001601950.1| hypothetical protein GDI_1705 [Gluconacetobacter diazotrophicus PAl
           5]
 ref|YP_002277825.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus
           PAl 5]
 emb|CAP55648.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gb|ACI53210.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 162

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 2/113 (1%)

Query: 3   VAQSLIVAAILFLLLFAIYMRGAIGGGDVKLLVALAIGLPLTGVIELLTITSLAGGVLAL 62
           +  S++VA  +F L FAI+  GAIGGGDVKLL A ++  P   V   +   +++GGVLA 
Sbjct: 51  IVGSILVAICVFGLCFAIWWFGAIGGGDVKLLSAASLLFPPAAVPSWILTIAMSGGVLAG 110

Query: 63  SHLVMRNLPYPKLAPAGSSFARRVYAVERWRHLRHAPLPYGVAIACGGIWTIL 115
            +L++R+     + P       R+   ERWR  R  PLPY VAIA G  + ++
Sbjct: 111 FYLMVRH--RVTVGPVRHGCFGRIVRSERWRMRRGGPLPYAVAIAAGSCFQLI 161


>ref|YP_001265345.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
 gb|ABQ71207.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
          Length = 157

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 23/113 (20%)

Query: 3   VAQSLIVAAILFLLLFAIYMRGAIGGGDVKLLVALAIGLPLTGVIELLTITSLAGGVLAL 62
           VA  + VA  +F L   ++M   +GGGDVK++ ALA+ LP   +I +LT+ +LAGG + L
Sbjct: 57  VALRIGVALAIFALFAVLFMLRMMGGGDVKMIGALALWLPFHALIVMLTVMALAGGAITL 116

Query: 63  SHLVMRNLPYPKLAPAGSSFARRVYAVERWRHLRHAP-LPYGVAIACGGIWTI 114
             L+                       +RWR     P +PYGVAIA GG+W I
Sbjct: 117 GLLIR----------------------QRWRPNADRPEVPYGVAIAIGGLWVI 147