BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0005.p (499 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769750.1| hypothetical protein blr3110 [Bradyrhizobium ja... 380 e-103 ref|YP_001207593.1| hypothetical protein BRADO5707 [Bradyrhizobi... 351 2e-94 ref|YP_485578.1| hypothetical protein RPB_1959 [Rhodopseudomonas... 345 7e-93 ref|YP_001242049.1| hypothetical protein BBta_6220 [Bradyrhizobi... 343 4e-92 emb|CAE29013.2| conserved hypothetical protein [Rhodopseudomonas... 332 7e-89 >ref|NP_769750.1| hypothetical protein blr3110 [Bradyrhizobium japonicum USDA 110] dbj|BAC48375.1| blr3110 [Bradyrhizobium japonicum USDA 110] Length = 481 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 221/468 (47%), Positives = 294/468 (62%), Gaps = 6/468 (1%) Query: 27 RPWLPLIFAATTYLALIIKGN-LLVDSDIYWHIVVGQWIIDHRAVPHADPFSFTMPGAPW 85 R LP + + Y ++I G LL D D Y HI VG+WI+ H A+P +DPFSF+M GAPW Sbjct: 16 RAALPWLVSLGVYATVLILGQRLLNDPDSYSHIEVGRWIMAHGALPASDPFSFSMHGAPW 75 Query: 86 ITSAWLAEVIYFAAFKLAGWPGPAMLAALSASLAIFLLTRLLLKALPNVPVMIMVAAAIA 145 IT WL+E++Y + L+GWPG ++AA + +LA LLT LL+ L ++MV AA+ Sbjct: 76 ITFEWLSEMVYAGVYALSGWPGVVVVAAAAIALAFGLLTFFLLRELSPSLTLLMVIAAVI 135 Query: 146 MAAIHTMARPHVLVFPLMVLWANALVEASEQRRAPSLWFLSLITLWANLHGSFTLGLALI 205 ++A H +ARPHVLV P+MV WA ALV ++ AP W L L+ LWANLHGS L L LI Sbjct: 136 LSAPHMLARPHVLVLPVMVTWAAALVRCMDRGGAPPYWALPLLVLWANLHGSVVLALGLI 195 Query: 206 GPFALEALWTADKSARVTVAWHWLRFGGLALAAACITPYGPESILVTMRLFQLGPILSKI 265 GP LEAL +S V WL F LALAA+C+TPYGPE +L+ + LGP L+ I Sbjct: 196 GPAVLEALLREGRSGWSHVLLRWLPFAALALAASCLTPYGPEPLLMPLTTLGLGPALAWI 255 Query: 266 SEWQPLDFGETNAVTVCLIAGAGYALYSGLKLPPIRVAALLAVIWQTLAHVRYVDVFALV 325 SEW+P DF + L+AG +AL G+ LP +R ++ ++ LA +R D+ A++ Sbjct: 256 SEWRPQDFSRIGGFELLLLAGI-FALSRGVTLPLVRALVVIGLLHFALAQIRNADLLAML 314 Query: 326 APFFIAGPLGRQLSWPELQHSRKLVQPARTAFVAAIAALVVATGMAMATVQYTLPRV-PR 384 AP ++A PLGR+ P + +R +AA A L+ + A+A P + P+ Sbjct: 315 APLYLAAPLGRKFGGPTGDDA---AGSSRGLTLAAFAGLIAVSAAALAHDIRPAPIITPQ 371 Query: 385 DAVERLKELKASRILNDYYFCGYLIFEGIPTFIDSRAELYGSAFLTRYYLAVSLHDVPDF 444 A+ + KA +LNDY F GYLIF GIPTFID R ELYG F+ RY AV+L D+ DF Sbjct: 372 AAIAQADLAKAGPVLNDYSFGGYLIFAGIPTFIDGRGELYGGPFIDRYNRAVALVDLGDF 431 Query: 445 VRLLDEYKIDATLLAPSTRAAGLLDRLPDWERAYADEVAVVHIRRAHP 492 ++LLDEYKI ATLLAP T A +LDRLP W+R Y+D+VAVVH RR P Sbjct: 432 LKLLDEYKIGATLLAPRTPAVAMLDRLPQWQRVYSDDVAVVHKRRDAP 479 >ref|YP_001207593.1| hypothetical protein BRADO5707 [Bradyrhizobium sp. ORS 278] emb|CAL79376.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 493 Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 203/466 (43%), Positives = 277/466 (59%), Gaps = 15/466 (3%) Query: 30 LPLIFAATTYLALIIKGN-LLVDSDIYWHIVVGQWIIDHRAVPHADPFSFTMPGAPWITS 88 LPL A Y LI+ GN +L D D W I VGQWIIDHR+VP D +SFTM GAPWI++ Sbjct: 19 LPLWVGAGVYALLILSGNRMLNDPDTMWQITVGQWIIDHRSVPEVDVYSFTMRGAPWIST 78 Query: 89 AWLAEVIYFAAFKLAGWPGPAMLAALSASLAIFLLTRLLLKALPNVPVMIMVAAAIAMAA 148 WLA+V Y AA+K+AGW GP +LAA + +L++ L R+L + L + ++ V AA + Sbjct: 79 QWLAQVAYAAAYKVAGWTGPVVLAAFAIALSLALFARMLSRHLRDSTTLLFVVAAFLLCL 138 Query: 149 IHTMARPHVLVFPLMVLWANALVEASEQRRAPSLWFLSLITLWANLHGSFTLGLALIGPF 208 H +ARPHVL FPL+V W L++A++++ AP L + LI LWANLHG F GL I P Sbjct: 139 PHLLARPHVLAFPLLVAWMAGLLDAADRKDAPPLVLVVLIALWANLHGGFVFGLFFIAPA 198 Query: 209 ALEALWTADKSARVTVAWHWLRFGGLALAAACITPYGPESILVTMRLFQLGPILSKISEW 268 AL+AL A+ +AR ++A W F LA+AA+C TPYG ++L + ++ LG L I EW Sbjct: 199 ALDALVNAEAAARRSLALRWAAFAALAVAASCCTPYGWNALLASQKILSLGQALPLILEW 258 Query: 269 QPLDFGETNAVTVCLIAGAGYALYSGLKLPPIRVAALLAVIWQTLAHVRYVDVFALVAPF 328 + DF +CL+ G G+AL GLKLPP+R+ LL ++ LA R ++FAL+ P Sbjct: 259 KATDFQNLGPFEICLLLGIGFALLHGLKLPPVRILMLLGLLHMALAQARAAELFALIGPL 318 Query: 329 FIAGPLGRQLSWPELQHSRKLVQPARTAFVAAIAALVVATGMAMATVQYTLPRVPR---- 384 +A PL RQ P T + IAA+V+A G+ T L P Sbjct: 319 VLAAPLARQFGVE--------TPPLTTLRLPLIAAIVLALGIGTLTSASILTYAPNMRGT 370 Query: 385 --DAVERLKELKASRILNDYYFCGYLIFEGIPTFIDSRAELYGSAFLTRYYLAVSLHDVP 442 AV LK+L +R+LNDY F GYLI G+ FID R ELYG F + A L + Sbjct: 371 PVAAVVELKKLNLARVLNDYDFGGYLIASGVAPFIDGRTELYGEKFFVDHNAASGLMEPD 430 Query: 443 DFVRLLDEYKIDATLLAPSTRAAGLLDRLPDWERAYADEVAVVHIR 488 + RLL +Y I+ATLL + A LLD + W++ YAD++A +H+R Sbjct: 431 NLFRLLKDYDIEATLLRTQSAATKLLDHVDGWQKVYADDIATIHLR 476 >ref|YP_485578.1| hypothetical protein RPB_1959 [Rhodopseudomonas palustris HaA2] gb|ABD06667.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 496 Score = 345 bits (886), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 204/466 (43%), Positives = 276/466 (59%), Gaps = 10/466 (2%) Query: 30 LPLIFAATTYLALIIKGN-LLVDSDIYWHIVVGQWIIDHRAVPHADPFSFTMPGAPWITS 88 LPL Y L++ G+ LL D D W + +GQWIIDHRAVP D +SFTM G PWI++ Sbjct: 20 LPLWIGVAVYAFLLVSGDRLLNDPDTLWQVTLGQWIIDHRAVPQVDVYSFTMAGQPWIST 79 Query: 89 AWLAEVIYFAAFKLAGWPGPAMLAALSASLAIFLLTRLLLKALPNVPVMIMVAAAIAMAA 148 WL++V+ A+++LAGW GP +L+A + + L R L + L ++ VAAA+A+ A Sbjct: 80 QWLSQVLLAASYQLAGWAGPVVLSAAALAATFMLYARWLGQRLRGSTALVFVAAAVALMA 139 Query: 149 IHTMARPHVLVFPLMVLWANALVEASEQRRAPSLWFLSLITLWANLHGSFTLGLALIGPF 208 H +ARPHVL P+MV W AL+ A+++R APS W L L+ LWANLHG F LG+AL+ P Sbjct: 140 PHMLARPHVLAMPVMVAWVGALMAAADRRAAPSFWLLPLMVLWANLHGGFVLGIALVAPI 199 Query: 209 ALEALWTADKSARVTVAWHWLRFGGLALAAACITPYGPESILVTMRLFQLGPILSKISEW 268 AL+A+ A S RV++ W FG AL +C PYG +IL + R+ LG L+ I EW Sbjct: 200 ALDAVLAAAPSRRVSLLLRWGAFGVAALIVSCANPYGWNAILASQRILSLGAALATIGEW 259 Query: 269 QPLDFGETNAVTVCLIAGAGYALYSGLKLPPIRVAALLAVIWQTLAHVRYVDVFALVAPF 328 P++F A V L+ G G AL+ G+ LPP+R+ LL ++ L+ R ++V AL+AP Sbjct: 260 APVNFSRVGAFEVALLGGLGLALWRGVTLPPVRILLLLGLVHMALSANRNIEVLALLAPL 319 Query: 329 FIAGPLGRQLSWPELQHSRKLVQPARTAF--VAAIAALVVATGMAMATVQYTLP---RVP 383 IA PL RQ+ E + PAR + VAA AL + +A A++ P P Sbjct: 320 IIAAPLARQIGGAEARGE----APARLSVGAVAAAIALTLGGTLAFASLHRFAPHPANSP 375 Query: 384 RDAVERLKELKASRILNDYYFCGYLIFEGIPTFIDSRAELYGSAFLTRYYLAVSLHDVPD 443 AV LK L R+ NDY F GYLI G+ FID R ELYG AF+ AV L Sbjct: 376 AAAVAELKTLGVQRVFNDYDFGGYLIANGVAPFIDGRTELYGEAFVVEQNSAVRLKPPEK 435 Query: 444 FVRLLDEYKIDATLLAPSTRAAGLLDRLPDWERAYADEVAVVHIRR 489 RLL +Y IDATLL A LLD + W++ Y+D+VA +H+RR Sbjct: 436 LFRLLADYDIDATLLRTEDAATHLLDHIDGWQKVYSDDVATIHLRR 481 >ref|YP_001242049.1| hypothetical protein BBta_6220 [Bradyrhizobium sp. BTAi1] gb|ABQ38143.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 493 Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 203/465 (43%), Positives = 277/465 (59%), Gaps = 3/465 (0%) Query: 27 RPWLPLIFAATTYLALIIKGN-LLVDSDIYWHIVVGQWIIDHRAVPHADPFSFTMPGAPW 85 R LPL A Y L+I GN LL D D W I VGQWI+DHRAVP D +SFTM GAPW Sbjct: 16 RALLPLWVGAGVYALLLISGNRLLNDPDTLWQITVGQWILDHRAVPEVDVYSFTMRGAPW 75 Query: 86 ITSAWLAEVIYFAAFKLAGWPGPAMLAALSASLAIFLLTRLLLKALPNVPVMIMVAAAIA 145 I++ WLA+V Y AA++LAGW GP +LAA + +LA L R L + L + +++ V AA Sbjct: 76 ISTQWLAQVGYAAAYRLAGWTGPVVLAASAIALAFALFARALGRHLRDSTMLVFVVAAFL 135 Query: 146 MAAIHTMARPHVLVFPLMVLWANALVEASEQRRAPSLWFLSLITLWANLHGSFTLGLALI 205 + H +ARPHVL FP++V W L++A++++ AP L + LI LWANLHG F GL + Sbjct: 136 LCLPHLLARPHVLAFPILVAWMAGLIDAADRKAAPPLALVLLIALWANLHGGFVFGLFFM 195 Query: 206 GPFALEALWTADKSARVTVAWHWLRFGGLALAAACITPYGPESILVTMRLFQLGPILSKI 265 P AL+A+ A+ R +A W+ F LA+AA+C TPYG ++L ++ LG L I Sbjct: 196 APAALDAVVNAEPPLRRALALRWMAFAALAVAASCCTPYGWNALLAAQKILSLGQALPLI 255 Query: 266 SEWQPLDFGETNAVTVCLIAGAGYALYSGLKLPPIRVAALLAVIWQTLAHVRYVDVFALV 325 EW+ DF +CL+ G+ALY GLKLPP+R+ LL ++ LA R ++ ALV Sbjct: 256 VEWKAADFQGLGPFEICLLLAIGFALYHGLKLPPVRILMLLGLLHMALAQARAAEILALV 315 Query: 326 APFFIAGPLGRQLSWPELQHSRKLVQPARTAFVAAIAALVVATGMAMATVQYTLPRVPRD 385 P IA PL RQL P +A V A+ A +A+ +++ T + P Sbjct: 316 GPLVIAAPLARQLD-PLPAAPAGARAALTSAVVLALGAGTLAS-LSVLTFAPNMRGTPVA 373 Query: 386 AVERLKELKASRILNDYYFCGYLIFEGIPTFIDSRAELYGSAFLTRYYLAVSLHDVPDFV 445 AV LK+L +R+LNDY F GYLI GI FID R ELYG F + A L + + Sbjct: 374 AVTELKKLNLTRVLNDYDFGGYLISTGIAPFIDGRTELYGETFFVDHNAASGLMEPDNLF 433 Query: 446 RLLDEYKIDATLLAPSTRAAGLLDRLPDWERAYADEVAVVHIRRA 490 RLL +Y I+ATLL + A LLD + W++ YAD++A +H+R+A Sbjct: 434 RLLKDYDIEATLLRTQSAATKLLDHVDGWQKVYADDIATIHLRKA 478 >emb|CAE29013.2| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 492 Score = 332 bits (852), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 211/464 (45%), Positives = 285/464 (61%), Gaps = 8/464 (1%) Query: 30 LPLIFAATTYLALIIKGN-LLVDSDIYWHIVVGQWIIDHRAVPHADPFSFTMPGAPWITS 88 LPL Y+ L+I G+ LL D D W + +GQWIIDHRAVP D +SFTM G PWI++ Sbjct: 19 LPLAIGLGVYVLLLISGDRLLNDPDTLWQVTIGQWIIDHRAVPWTDSYSFTMAGQPWIST 78 Query: 89 AWLAEVIYFAAFKLAGWPGPAMLAALSASLAIFLLTRLLLKALPNVPVMIMVAAAIAMAA 148 WLA+V + A+++ GW GP ++ A + +LL RLL L + +I AAA+A+AA Sbjct: 79 QWLAQVAFAASYQFVGWAGPVVMTAAALGGTFYLLARLLGARLNDTATVIFAAAALALAA 138 Query: 149 IHTMARPHVLVFPLMVLWANALVEASEQRRAPSLWFLSLITLWANLHGSFTLGLALIGPF 208 H +ARPHV+ P+M+ W ALV A+++R P LW L LITLWANLHG F G+AL+ PF Sbjct: 139 PHMLARPHVMAMPVMLAWVGALVGAADRRGVPPLWTLPLITLWANLHGGFVFGIALVAPF 198 Query: 209 ALEALWTADKSARVTVAWHWLRFGGLALAAACITPYGPESILVTMRLFQLGPILSKISEW 268 AL+A+ +A++ RV + W FG LALAA CITPYG +SIL + ++ LG LS+I EW Sbjct: 199 ALDAVLSAERPRRVALLLRWALFGVLALAAGCITPYGWDSILASRKILSLGEALSRIGEW 258 Query: 269 QPLDFGETNAVTVCLIAGAGYALYSGLKLPPIRVAALLAVIWQTLAHVRYVDVFALVAPF 328 P DF + + + L+ G G AL G+ LPP+R+ LL +I L+H R +++ AL+AP Sbjct: 259 APEDFSQIGVLEITLLGGLGLALLRGVTLPPVRILILLGLIHMALSHSRNLELLALLAPL 318 Query: 329 FIAGPLGRQLSWPELQHSRKLVQPARTAFVAAIAALVVATGMAMATVQYTLPR---VPRD 385 +A PL Q + P+ AA+ AL + +A AT PR P+ Sbjct: 319 VLAAPLAAQCG----VAAPAGAPPSSRGLTAALLALAIGGTLAFATWHSFAPRSLFAPQA 374 Query: 386 AVERLKELKASRILNDYYFCGYLIFEGIPTFIDSRAELYGSAFLTRYYLAVSLHDVPDFV 445 AV LK L A R+ NDY F GYLI G+PTFID R EL+G + + AV L Sbjct: 375 AVAELKRLGAKRVFNDYSFGGYLIANGVPTFIDGRTELFGETLVVDHDDAVRLRAPDKLF 434 Query: 446 RLLDEYKIDATLLAPSTRAAGLLDRLPDWERAYADEVAVVHIRR 489 RLLD Y +DATLL PS+ AA LLDR W++ YAD++AV+H R+ Sbjct: 435 RLLDAYAVDATLLIPSSPAAKLLDRTEGWQKVYADDLAVIHQRK 478