BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0003.p         (150 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08630220.1| protein of unknown function DUF88 [Bradyrhizo...   125   3e-27
gb|AAF04325.1| unknown [Bradyrhizobium japonicum]                     124   3e-27
ref|NP_948033.1| hypothetical protein RPA2691 [Rhodopseudomonas ...   124   4e-27
ref|YP_569775.1| hypothetical protein RPD_2645 [Rhodopseudomonas...   124   4e-27
ref|YP_004109132.1| hypothetical protein Rpdx1_2816 [Rhodopseudo...   124   5e-27

>ref|ZP_08630220.1| protein of unknown function DUF88 [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP07093.1| protein of unknown function DUF88 [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 210

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 3/130 (2%)

Query: 6   TNRIALSIHDANLHTTVKSLGFEVDFRRLLAEFGKYGLIVCAYFYTVVTDDDEFRSIRPP 65
           TN+IAL I  ANL+ T K+LGF++D++RLL EF   G +V A++YT + +D E+ SIRP 
Sbjct: 5   TNKIALFIDGANLYATAKTLGFDIDYKRLLLEFQSRGTLVRAFYYTAIIEDQEYSSIRPL 64

Query: 66  ADWLDTTGIRSGESRPKEHSDGE---EVKRSVGVAIAADALEIARQIDHTFLFSGDGDLR 122
            DWLD  G        KE  D     +VK ++ + +A DA+E+A  ID   LFSGDGD R
Sbjct: 65  IDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSGDGDFR 124

Query: 123 SVVEAVKRMG 132
           S+VEAV+R G
Sbjct: 125 SLVEAVQRRG 134


>gb|AAF04325.1| unknown [Bradyrhizobium japonicum]
          Length = 149

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 86/135 (63%), Gaps = 3/135 (2%)

Query: 1   MGIEMTNRIALSIHDANLHTTVKSLGFEVDFRRLLAEFGKYGLIVCAYFYTVVTDDDEFR 60
           M    TN+IAL I  ANL+ T K+LGF++D++RLL EF   G ++ A++YT + +D E+ 
Sbjct: 1   MSPSPTNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYS 60

Query: 61  SIRPPADWLDTTGIRSGESRPKEHSDGE---EVKRSVGVAIAADALEIARQIDHTFLFSG 117
           SIRP  DWLD  G        KE  D     +VK ++ + +A DA+E+A  ID   LFSG
Sbjct: 61  SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSG 120

Query: 118 DGDLRSVVEAVKRMG 132
           DGD RS+VEAV+R G
Sbjct: 121 DGDFRSLVEAVQRRG 135


>ref|NP_948033.1| hypothetical protein RPA2691 [Rhodopseudomonas palustris CGA009]
 ref|YP_001991949.1| hypothetical protein Rpal_2966 [Rhodopseudomonas palustris TIE-1]
 emb|CAE28132.1| DUF88 [Rhodopseudomonas palustris CGA009]
 gb|ACF01474.1| protein of unknown function DUF88 [Rhodopseudomonas palustris
           TIE-1]
          Length = 216

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 86/135 (63%), Gaps = 3/135 (2%)

Query: 1   MGIEMTNRIALSIHDANLHTTVKSLGFEVDFRRLLAEFGKYGLIVCAYFYTVVTDDDEFR 60
           M    +N+IAL I  ANL+ T K+LGF++D++RLL EF   G +V A++YT + +D E+ 
Sbjct: 1   MSTSSSNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGNLVRAFYYTAIIEDQEYS 60

Query: 61  SIRPPADWLDTTGIRSGESRPKEHSDGE---EVKRSVGVAIAADALEIARQIDHTFLFSG 117
           SIRP  DWLD  G        KE  D     +VK ++ + +A DA+E+A  ID   LFSG
Sbjct: 61  SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSG 120

Query: 118 DGDLRSVVEAVKRMG 132
           DGD RS+VEAV+R G
Sbjct: 121 DGDFRSLVEAVQRRG 135


>ref|YP_569775.1| hypothetical protein RPD_2645 [Rhodopseudomonas palustris BisB5]
 gb|ABE39874.1| protein of unknown function DUF88 [Rhodopseudomonas palustris
           BisB5]
          Length = 228

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 86/135 (63%), Gaps = 3/135 (2%)

Query: 1   MGIEMTNRIALSIHDANLHTTVKSLGFEVDFRRLLAEFGKYGLIVCAYFYTVVTDDDEFR 60
           M    +N+IAL I  ANL+ T K+LGF++D++RLL EF   G ++ A++YT + +D E+ 
Sbjct: 20  MSTSASNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLIRAFYYTAIIEDQEYS 79

Query: 61  SIRPPADWLDTTGIRSGESRPKEHSDGE---EVKRSVGVAIAADALEIARQIDHTFLFSG 117
           SIRP  DWLD  G        KE  D     +VK ++ + +A DA+E+A  ID   LFSG
Sbjct: 80  SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSG 139

Query: 118 DGDLRSVVEAVKRMG 132
           DGD RS+VEAV+R G
Sbjct: 140 DGDFRSLVEAVQRRG 154


>ref|YP_004109132.1| hypothetical protein Rpdx1_2816 [Rhodopseudomonas palustris DX-1]
 gb|ADU44399.1| hypothetical protein Rpdx1_2816 [Rhodopseudomonas palustris DX-1]
          Length = 213

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 86/135 (63%), Gaps = 3/135 (2%)

Query: 1   MGIEMTNRIALSIHDANLHTTVKSLGFEVDFRRLLAEFGKYGLIVCAYFYTVVTDDDEFR 60
           M    +N+IAL I  ANL+ T K+LGF++D++RLL EF   G +V A++YT + +D E+ 
Sbjct: 1   MSTSASNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQGRGNLVRAFYYTAIIEDQEYS 60

Query: 61  SIRPPADWLDTTGIRSGESRPKEHSDGE---EVKRSVGVAIAADALEIARQIDHTFLFSG 117
           SIRP  DWLD  G        KE  D     +VK ++ + +A DA+E+A  ID   LFSG
Sbjct: 61  SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSG 120

Query: 118 DGDLRSVVEAVKRMG 132
           DGD RS+VEAV+R G
Sbjct: 121 DGDFRSLVEAVQRRG 135