BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0031.p (517 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_576751.1| periplasmic sensor signal transduction histidin... 896 0.0 ref|YP_317826.1| Signal transduction histidine kinase [Nitrobact... 867 0.0 ref|ZP_01046371.1| Signal transduction histidine kinase [Nitroba... 863 0.0 ref|YP_001206686.1| putative sensor histidine kinase membrane pr... 850 0.0 ref|YP_001239459.1| putative sensor histidine kinase membrane pr... 849 0.0 >ref|YP_576751.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gb|ABE62291.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 536 Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/511 (84%), Positives = 465/511 (90%), Gaps = 1/511 (0%) Query: 7 SRRVAAQRVREARDRLTSTSGTRPAFDAELLRQYAQTRMSASYVVMLLVVATGVLFGLWM 66 +RR A QRVREARDRLTSTSGTRPAFD ELLRQYAQTR+SAS VVMLLVVATGVLFG WM Sbjct: 25 NRRAATQRVREARDRLTSTSGTRPAFDHELLRQYAQTRLSASLVVMLLVVATGVLFGFWM 84 Query: 67 KPIVAGAWTVGILCVHLAIIRSCSRFLAEPTSVAVTRKWRTRFVLLDLLYGLCWTAILIH 126 +P A WT G+LC+H I +C+ +L EP+S TRKWR RF+LLDLLYGLCWT IL+H Sbjct: 85 EPASAAVWTFGMLCIHAVTIYNCNNYLKEPSSPNSTRKWRARFILLDLLYGLCWTTILVH 144 Query: 127 PAGRDLASNTLMMFLMLLVIAVSSMLAASLPIAALAATVPVTVGIALDLVLNGAFDNYVL 186 PAG D +NTLMMFLMLLV+AVSSMLAASLPIAA AAT PVT IAL V+ G+F+NY+L Sbjct: 145 PAGFDPVTNTLMMFLMLLVVAVSSMLAASLPIAAFAATAPVTSAIALKFVIGGSFNNYIL 204 Query: 187 ALLALAAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESANVAK 246 A+LALAAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESANVAK Sbjct: 205 AVLALAAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESANVAK 264 Query: 247 SRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHTVPVYKEYSADIHNSGVHLLNLINEIL 306 SRFLAQMSHELRTPLNAILGFSEVMKSEIFG H V VYK YSADIHNSGVHLLNLINEIL Sbjct: 265 SRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYKSYSADIHNSGVHLLNLINEIL 324 Query: 307 DLSRIEAGRYELNEEAVALVHVVADCHHLLKLRASSRGITIHEVFEHGMPRIWGDERAIR 366 DLSRIEAGRYELNEEAV+LVHVVADCHHLLKLRASSRGITIHEVFEHGMPRIWGDERA R Sbjct: 325 DLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRASSRGITIHEVFEHGMPRIWGDERATR 384 Query: 367 QVVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIAEDEIPVVLASFGQGSN 426 Q+VLNLLSN+IKFTPQGGEIWLKVGWTASGGQYLSVKD+GSGIAEDEIP+VLASFGQG+N Sbjct: 385 QIVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLSVKDSGSGIAEDEIPIVLASFGQGTN 444 Query: 427 SIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTLPPERVMSALAPMTEEAP 486 SIKSAEQGAGLGLPIAKSLIDMHGGTFTL+SKLR+GTEVIVT PPERVMSALAPM EEAP Sbjct: 445 SIKSAEQGAGLGLPIAKSLIDMHGGTFTLRSKLRVGTEVIVTFPPERVMSALAPMAEEAP 504 Query: 487 PMQPPEPVEPAMGADRKRVRRKSIMSAGTGL 517 P+QP E +PA A R+R+R K IM+AGTGL Sbjct: 505 PIQPAETADPAADA-RRRLRNKPIMNAGTGL 534 >ref|YP_317826.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gb|ABA04474.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 536 Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/510 (82%), Positives = 453/510 (88%), Gaps = 1/510 (0%) Query: 8 RRVAAQRVREARDRLTSTSGTRPAFDAELLRQYAQTRMSASYVVMLLVVATGVLFGLWMK 67 RR QRVREARDRLTSTSGTRPAFD ELLRQYAQTR+SAS+VVMLL+VATGVLFG WM Sbjct: 26 RRATTQRVREARDRLTSTSGTRPAFDHELLRQYAQTRLSASFVVMLLLVATGVLFGFWMA 85 Query: 68 PIVAGAWTVGILCVHLAIIRSCSRFLAEPTSVAVTRKWRTRFVLLDLLYGLCWTAILIHP 127 P A AWT G+LC+H II +C +L EP+S TRKWR RF+L DLLYGLCWT IL+HP Sbjct: 86 PAAAAAWTFGMLCIHTVIIYNCKGYLKEPSSATSTRKWRARFILFDLLYGLCWTTILVHP 145 Query: 128 AGRDLASNTLMMFLMLLVIAVSSMLAASLPIAALAATVPVTVGIALDLVLNGAFDNYVLA 187 AG D +NTLMMFLMLLV+AVSSML+ASLPIAA AAT PVT IA + G+F+NY+LA Sbjct: 146 AGSDPVTNTLMMFLMLLVVAVSSMLSASLPIAAFAATAPVTSAIAFKFAMGGSFNNYILA 205 Query: 188 LLALAAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESANVAKS 247 +L L AEG+FALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESANVAKS Sbjct: 206 ILTLTAEGFFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESANVAKS 265 Query: 248 RFLAQMSHELRTPLNAILGFSEVMKSEIFGAHTVPVYKEYSADIHNSGVHLLNLINEILD 307 RFLAQMSHELRTPLNAILGFSEVMKSEIFG H V VYK YSADIHNSGVHLLNLINEILD Sbjct: 266 RFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYKTYSADIHNSGVHLLNLINEILD 325 Query: 308 LSRIEAGRYELNEEAVALVHVVADCHHLLKLRASSRGITIHEVFEHGMPRIWGDERAIRQ 367 LSRIEAGRYELNEEAV+LVHVV +CHHLLKLRAS+RGITIHE+FE GMPRIWGDERA RQ Sbjct: 326 LSRIEAGRYELNEEAVSLVHVVTECHHLLKLRASNRGITIHEIFEQGMPRIWGDERATRQ 385 Query: 368 VVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIAEDEIPVVLASFGQGSNS 427 +VLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVKD GSGIAEDEIP+VLASFGQGSNS Sbjct: 386 IVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVKDNGSGIAEDEIPIVLASFGQGSNS 445 Query: 428 IKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTLPPERVMSALAPMTEEAPP 487 IKSAEQGAGLGLPIAKSLIDMHGGTFTL+SKLR+GTEVIVT PPERVMSALAPM EE PP Sbjct: 446 IKSAEQGAGLGLPIAKSLIDMHGGTFTLRSKLRVGTEVIVTFPPERVMSALAPMAEEGPP 505 Query: 488 MQPPEPVEPAMGADRKRVRRKSIMSAGTGL 517 +QP + + +R+R+R K IM+AGTGL Sbjct: 506 LQPAQ-ADDHTADERRRLRNKPIMNAGTGL 534 >ref|ZP_01046371.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gb|EAQ35685.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 536 Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/510 (82%), Positives = 452/510 (88%), Gaps = 1/510 (0%) Query: 8 RRVAAQRVREARDRLTSTSGTRPAFDAELLRQYAQTRMSASYVVMLLVVATGVLFGLWMK 67 RR AQRVREARDRLTSTSGTRPAFD ELLRQYAQT +SAS+VVMLL+VATGVLFG WM+ Sbjct: 26 RRATAQRVREARDRLTSTSGTRPAFDYELLRQYAQTPLSASFVVMLLLVATGVLFGFWME 85 Query: 68 PIVAGAWTVGILCVHLAIIRSCSRFLAEPTSVAVTRKWRTRFVLLDLLYGLCWTAILIHP 127 P A AWT G+LC+H II +C +L P+S TRKWR RF+LLDLLYGLCWT IL+HP Sbjct: 86 PAAAAAWTFGMLCIHAVIIYNCKNYLKAPSSANSTRKWRARFILLDLLYGLCWTTILVHP 145 Query: 128 AGRDLASNTLMMFLMLLVIAVSSMLAASLPIAALAATVPVTVGIALDLVLNGAFDNYVLA 187 AG D +NTLMMFLMLLV+AVSSML+ASLPIAALAAT PVT IAL G+F++Y+LA Sbjct: 146 AGSDPVTNTLMMFLMLLVVAVSSMLSASLPIAALAATAPVTSAIALKFATGGSFNSYILA 205 Query: 188 LLALAAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESANVAKS 247 +LAL AEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESANVAKS Sbjct: 206 ILALTAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESANVAKS 265 Query: 248 RFLAQMSHELRTPLNAILGFSEVMKSEIFGAHTVPVYKEYSADIHNSGVHLLNLINEILD 307 RFLAQMSHELRTPLNAILGFSEVMKSEIFG H V VYK YSADIHNSGVHLLNLINEILD Sbjct: 266 RFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYKTYSADIHNSGVHLLNLINEILD 325 Query: 308 LSRIEAGRYELNEEAVALVHVVADCHHLLKLRASSRGITIHEVFEHGMPRIWGDERAIRQ 367 LSRIEAGRYELNEEAV+LVHVV +CHHLLKLRAS+RGITIHEVFE GMPRIWGDERA RQ Sbjct: 326 LSRIEAGRYELNEEAVSLVHVVTECHHLLKLRASNRGITIHEVFEQGMPRIWGDERAARQ 385 Query: 368 VVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIAEDEIPVVLASFGQGSNS 427 +VLNL+SNAIKFTPQGGEIWLK+GWTASGGQYL VKD GSGIAEDEIP+VLASFGQGSNS Sbjct: 386 IVLNLVSNAIKFTPQGGEIWLKIGWTASGGQYLGVKDNGSGIAEDEIPIVLASFGQGSNS 445 Query: 428 IKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTLPPERVMSALAPMTEEAPP 487 IKSAEQGAGLGLPIAKSLID+HGGTFTLKSKLR+GTEVIVT PPERVMSALAPM EE PP Sbjct: 446 IKSAEQGAGLGLPIAKSLIDLHGGTFTLKSKLRVGTEVIVTFPPERVMSALAPMAEEGPP 505 Query: 488 MQPPEPVEPAMGADRKRVRRKSIMSAGTGL 517 +QP + + A R R K IM+AGTGL Sbjct: 506 LQPAQADDAAADDKR-RPGNKPIMNAGTGL 534 >ref|YP_001206686.1| putative sensor histidine kinase membrane protein [Bradyrhizobium sp. ORS 278] emb|CAL78469.1| putative sensor histidine kinase, putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 532 Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/514 (82%), Positives = 468/514 (91%), Gaps = 3/514 (0%) Query: 4 PVNSRRVAAQRVREARDRLTSTSGTRPAFDAELLRQYAQTRMSASYVVMLLVVATGVLFG 63 PV+ RR A QRVREARDRLTSTSGTRPAFD ELLRQYAQTR+SASY+VMLLVVATG++ Sbjct: 22 PVSQRRAAQQRVREARDRLTSTSGTRPAFDRELLRQYAQTRISASYIVMLLVVATGMMLS 81 Query: 64 LWMKPIVAGAWTVGILCVHLAIIRSCSRFLAEPTSVAVTRKWRTRFVLLDLLYGLCWTAI 123 +W+ + AGAWT+G+LC+H AI+R+CS FLA+ S+A TR+WRTRFVLLDLLYG+CW AI Sbjct: 82 VWLHAVAAGAWTLGVLCIHAAIVRNCSNFLADQPSLAATRRWRTRFVLLDLLYGVCWMAI 141 Query: 124 LIHPAGRDLASNTLMMFLMLLVIAVSSMLAASLPIAALAATVPVTVGIALDLVLNGAFDN 183 LIHPA ++ S TLMMFLMLLVIAVSSMLAA+LP+AA+A T PVTV I L L L+G FDN Sbjct: 142 LIHPALAEV-SGTLMMFLMLLVIAVSSMLAANLPVAAVAVTAPVTVAITLSLALSGTFDN 200 Query: 184 YVLALLALAAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESAN 243 Y+LA A+AAEGYF LLAH+LHSTTLATLEARAEKDALIGELEQAKAISDEAR+RAE+AN Sbjct: 201 YLLAGFAVAAEGYFVLLAHQLHSTTLATLEARAEKDALIGELEQAKAISDEARYRAEAAN 260 Query: 244 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHTVPVYKEYSADIHNSGVHLLNLIN 303 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAH VPVYKEYSADIHNSGVHLLNLIN Sbjct: 261 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAVPVYKEYSADIHNSGVHLLNLIN 320 Query: 304 EILDLSRIEAGRYELNEEAVALVHVVADCHHLLKLRASSRGITIHEVFEHGMPRIWGDER 363 EILDLSRIEAGRYELNEEAVALVHV+ADCHHLLKLRASSRGITIHEVFE MPR+W DER Sbjct: 321 EILDLSRIEAGRYELNEEAVALVHVIADCHHLLKLRASSRGITIHEVFEQKMPRLWADER 380 Query: 364 AIRQVVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIAEDEIPVVLASFGQ 423 AIRQVVLNLLSNAIKFTPQGGEIWLK GWTASGGQYLSVKDTGSGI E+EIP+VLASFGQ Sbjct: 381 AIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPENEIPIVLASFGQ 440 Query: 424 GSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTLPPERVMSALAPMTE 483 GSNSIKSAEQGAGLGLPIAK+LI+MHGGTFTLKSK+RIGTEVIVT PPERVMSALAP+++ Sbjct: 441 GSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKSKVRIGTEVIVTFPPERVMSALAPLSD 500 Query: 484 EAPPMQPPEPVEPAMGADRKRVRRKSIMSAGTGL 517 EAPP+QP PA +++R+ RK IM+AGTGL Sbjct: 501 EAPPLQPDPATAPAQ--EKRRLLRKPIMNAGTGL 532 >ref|YP_001239459.1| putative sensor histidine kinase membrane protein [Bradyrhizobium sp. BTAi1] gb|ABQ35553.1| putative sensor histidine kinase, putative membrane protein [Bradyrhizobium sp. BTAi1] Length = 532 Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/514 (82%), Positives = 466/514 (90%), Gaps = 3/514 (0%) Query: 4 PVNSRRVAAQRVREARDRLTSTSGTRPAFDAELLRQYAQTRMSASYVVMLLVVATGVLFG 63 P + RR A QRVREARDRLTSTSGTRPAFD ELLRQYAQTR+SASY+VMLLVVATG++ Sbjct: 22 PASQRRAAQQRVREARDRLTSTSGTRPAFDRELLRQYAQTRISASYIVMLLVVATGLMLS 81 Query: 64 LWMKPIVAGAWTVGILCVHLAIIRSCSRFLAEPTSVAVTRKWRTRFVLLDLLYGLCWTAI 123 +W+ + AGAWT G+LC+H AI+R+CS FLA+ S+A TR+WRTRFVLLDLLYG+CW AI Sbjct: 82 VWLHALAAGAWTCGVLCIHAAIVRNCSNFLADQPSMAATRRWRTRFVLLDLLYGVCWMAI 141 Query: 124 LIHPAGRDLASNTLMMFLMLLVIAVSSMLAASLPIAALAATVPVTVGIALDLVLNGAFDN 183 LIHPA ++ S TLMMFLMLLVIAVSSMLAA+LP+AA+A T PVTV I L L L+G FDN Sbjct: 142 LIHPALAEV-SGTLMMFLMLLVIAVSSMLAANLPVAAVAVTAPVTVAITLSLALSGTFDN 200 Query: 184 YVLALLALAAEGYFALLAHRLHSTTLATLEARAEKDALIGELEQAKAISDEARHRAESAN 243 Y+LA A+AAEGYF LLAH+LHSTTLATLEARAEKDALIGELEQAKAISDEAR+RAE+AN Sbjct: 201 YLLAAFAVAAEGYFVLLAHQLHSTTLATLEARAEKDALIGELEQAKAISDEARYRAEAAN 260 Query: 244 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHTVPVYKEYSADIHNSGVHLLNLIN 303 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAH VPVYKEYSADIHNSGVHLLNLIN Sbjct: 261 VAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAVPVYKEYSADIHNSGVHLLNLIN 320 Query: 304 EILDLSRIEAGRYELNEEAVALVHVVADCHHLLKLRASSRGITIHEVFEHGMPRIWGDER 363 EILDLSRIEAGRYELNEEAVALVHVVADCHHLLKLRASSRG+TIHEVFE MPR+W DER Sbjct: 321 EILDLSRIEAGRYELNEEAVALVHVVADCHHLLKLRASSRGLTIHEVFEQNMPRLWADER 380 Query: 364 AIRQVVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVKDTGSGIAEDEIPVVLASFGQ 423 AIRQVVLNLLSNAIKFTPQGGEIWLK GWTASGGQYLSVKDTGSGI E+EIP+VLASFGQ Sbjct: 381 AIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPENEIPIVLASFGQ 440 Query: 424 GSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTLPPERVMSALAPMTE 483 GSNSIKSAEQGAGLGLPIAK+LI+MHGGTFTLKSK+RIGTEVIVT PPERVMSALAP+++ Sbjct: 441 GSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKSKVRIGTEVIVTFPPERVMSALAPLSD 500 Query: 484 EAPPMQPPEPVEPAMGADRKRVRRKSIMSAGTGL 517 EAPP+QP PA +++R+ RK IM+AGTGL Sbjct: 501 EAPPLQPETVAAPAQ--EKRRLLRKPIMNAGTGL 532