BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0028.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766970.1| two-component response regulator [Bradyrhizobiu... 208 4e-52 ref|YP_001203587.1| two-component LuxR family transcriptional re... 200 1e-49 ref|ZP_07657542.1| glycerol metabolism activator [Roseibium sp. ... 170 1e-40 ref|NP_102790.1| two-component response regulator [Mesorhizobium... 168 5e-40 ref|YP_004612471.1| two component LuxR family transcriptional re... 167 9e-40 >ref|NP_766970.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC45595.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 232 Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 107/187 (57%), Positives = 143/187 (76%) Query: 7 PDAEVLQATSIDGALDVIAARDGLDLILLDLSMPGTTGLLGAYRVRAAAPRSALVIVSAH 66 P A++LQATSIDGAL+ +AA LDLILLDLSMPGTTGL G R+R A P+ +VIVS + Sbjct: 26 PAADILQATSIDGALEQVAATTELDLILLDLSMPGTTGLSGIIRIRKAFPKIPVVIVSGY 85 Query: 67 DDPRIVGGAISLGISGYIPKSTPKLELARLLRGILEGAVCLPTRFRDTATARKAQAETRE 126 D +I+ GA+SLG+SGYI KS+ K +LA+ + +L GAVC+P +R ++A ++ Sbjct: 86 QDRQIISGALSLGVSGYILKSSSKQDLAQSIGEVLRGAVCVPAAYRGQVRPQRAAGPAQD 145 Query: 127 LVQQLGQFTAQQLRVLDMICRGLQNKHIAYELDISVTTVKVHVSEILRKLGVRSRTEAII 186 L+++L + T QQLRVL+M+ RGLQNK IA+EL IS TTVKVHVS+ILRKL V SRT+AI+ Sbjct: 146 LLKRLHELTPQQLRVLEMLKRGLQNKQIAFELKISETTVKVHVSDILRKLNVISRTKAIV 205 Query: 187 ALSKLDF 193 +S++DF Sbjct: 206 EMSRIDF 212 >ref|YP_001203587.1| two-component LuxR family transcriptional regulator (modular protein) [Bradyrhizobium sp. ORS 278] emb|CAL75350.1| two-component transcriptional regulator, LuxR family (modular protein) [Bradyrhizobium sp. ORS 278] Length = 293 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 107/192 (55%), Positives = 140/192 (72%), Gaps = 1/192 (0%) Query: 2 IGAEFPDAEVLQATSIDGALDVIAARDGLDLILLDLSMPGTTGLLGAYRVRAAAPRSALV 61 I A PDAE+LQATSID A+ +++ G+DLILLDLS PGTTGL G R+R +APR+ ++ Sbjct: 68 ISAALPDAEMLQATSIDTAIGLLSPPPGVDLILLDLSTPGTTGLSGVIRLRKSAPRTPIL 127 Query: 62 IVSAHDDPRIVGGAISLGISGYIPKSTPKLELARLLRGILEGAVCLPTRFRDTATARKAQ 121 +VSAH DPR+V +SLG++GY+ KS+ K +LA + +L G V +P R +A AR+ + Sbjct: 128 VVSAHQDPRLVAYVLSLGVAGYVSKSSTKEQLAHAINSVLRGDVHVPGSAR-SAEARRTR 186 Query: 122 AETRELVQQLGQFTAQQLRVLDMICRGLQNKHIAYELDISVTTVKVHVSEILRKLGVRSR 181 ++L+++L T QQLRVLD I GLQNK IAYEL I TTVKVHVS+ILRKL V SR Sbjct: 187 LPAQDLLKRLHDLTPQQLRVLDQIRCGLQNKQIAYELGICETTVKVHVSDILRKLQVTSR 246 Query: 182 TEAIIALSKLDF 193 T+AII + KLDF Sbjct: 247 TQAIIEMEKLDF 258 >ref|ZP_07657542.1| glycerol metabolism activator [Roseibium sp. TrichSKD4] gb|EFO33687.1| glycerol metabolism activator [Roseibium sp. TrichSKD4] Length = 236 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 122/187 (65%), Gaps = 2/187 (1%) Query: 6 FPDAEVLQATSIDGALDVIAARDGLDLILLDLSMPGTTGLLGAYRVRAAAPRSALVIVSA 65 +PD+ A S+D A +A G DL LLDLS+PG G+ G +R PR +V+VS Sbjct: 32 YPDSNTQDAASLDEACGYLAKDSGYDLALLDLSIPGVRGMEGLLHLRTHFPRLPVVVVSG 91 Query: 66 HDDPRIVGGAISLGISGYIPKSTPKLELARLLRGILEGAVCLPTRFRDTATARKAQAETR 125 +DDPRIV ++ G +G++PKS+ K LA ++ ++ GAV +P D TA + T+ Sbjct: 92 NDDPRIVSQVLAYGAAGFVPKSSKKAALADAIQHVMSGAVYVPEDMDDAQTALDDK--TQ 149 Query: 126 ELVQQLGQFTAQQLRVLDMICRGLQNKHIAYELDISVTTVKVHVSEILRKLGVRSRTEAI 185 E++Q++ T QQ++VL MIC GL NK IA+EL + TTVK HVSEILRKL V SRT+A+ Sbjct: 150 EMIQRVASLTPQQMKVLKMICDGLLNKQIAFELSVGETTVKAHVSEILRKLNVFSRTQAV 209 Query: 186 IALSKLD 192 I +SKL+ Sbjct: 210 IEISKLE 216 >ref|NP_102790.1| two-component response regulator [Mesorhizobium loti MAFF303099] dbj|BAB48576.1| probable two-component response regulator [Mesorhizobium loti MAFF303099] Length = 227 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 91/190 (47%), Positives = 128/190 (67%), Gaps = 7/190 (3%) Query: 6 FPDAEVLQATSIDGALDVIAARDGLDLILLDLSMPGTTGLLGAYRVRAAAPRSALVIVSA 65 +P+ + ++A SI ALD++A DL LLDLSMP G G ++R PR +VIVS Sbjct: 31 YPEVDTVEARSIAEALDLLADAKPFDLALLDLSMPDVHGFDGLLQLRTRYPRLPVVIVSG 90 Query: 66 HDDPRIVGGAISLGISGYIPKSTPKLELARLLRGILEGAVCLPTRFRDTATARKAQAET- 124 H++PRI+ A+S G +G+IPKS K +LA +R +++GA+ +P +T + A A++ Sbjct: 91 HEEPRIISEALSYGAAGFIPKSARKSDLAAAIRSVMDGAIYVP----ETYEGQPADADSI 146 Query: 125 --RELVQQLGQFTAQQLRVLDMICRGLQNKHIAYELDISVTTVKVHVSEILRKLGVRSRT 182 ++VQ+L + T QQLRVL M+ +GL NK IAYEL + TTVK HVSEILRKL V SRT Sbjct: 147 DRADMVQRLSKLTPQQLRVLQMLRQGLLNKQIAYELQVGETTVKAHVSEILRKLNVYSRT 206 Query: 183 EAIIALSKLD 192 +A+I +SKLD Sbjct: 207 QAVIEVSKLD 216 >ref|YP_004612471.1| two component LuxR family transcriptional regulator [Mesorhizobium opportunistum WSM2075] gb|AEH88377.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 227 Score = 167 bits (423), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 88/187 (47%), Positives = 126/187 (67%), Gaps = 1/187 (0%) Query: 6 FPDAEVLQATSIDGALDVIAARDGLDLILLDLSMPGTTGLLGAYRVRAAAPRSALVIVSA 65 +P+ + ++A SI ALD++A DL LLDLSMP G G ++R PR +VIVS Sbjct: 31 YPEVDTVEARSITEALDLLADAKPFDLALLDLSMPDVHGFDGLLQLRTRYPRLPVVIVSG 90 Query: 66 HDDPRIVGGAISLGISGYIPKSTPKLELARLLRGILEGAVCLPTRFRDTATARKAQAETR 125 +++PRI+ A+S G +G+IPKS K +LA +R +++GA+ +P + + A ++ Sbjct: 91 YEEPRIISEALSYGAAGFIPKSARKSDLAAAIRSVMDGAIYVPQTY-EGQPADADSSDRA 149 Query: 126 ELVQQLGQFTAQQLRVLDMICRGLQNKHIAYELDISVTTVKVHVSEILRKLGVRSRTEAI 185 ++VQ+L + T QQLRVL M+ +GL NK IAYEL + TTVK HVSEILRKL V SRT+A+ Sbjct: 150 DMVQRLSKLTPQQLRVLQMLRQGLLNKQIAYELQVGETTVKAHVSEILRKLNVYSRTQAV 209 Query: 186 IALSKLD 192 I +SKLD Sbjct: 210 IEVSKLD 216