BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0058.0026.p         (47 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001203589.1| Mox/cytochrome c like protein [Bradyrhizobiu...    67   1e-09
ref|NP_766972.1| hypothetical protein bll0332 [Bradyrhizobium ja...    61   5e-08
ref|YP_003799490.1| putative cytochrome c553 [Candidatus Nitrosp...    40   0.13 
ref|YP_003799958.1| putative cytochrome c55x [Candidatus Nitrosp...    39   0.28 
ref|ZP_07750390.1| cytochrome c class I [Mucilaginibacter paludi...    37   0.97 

>ref|YP_001203589.1| Mox/cytochrome c like protein [Bradyrhizobium sp. ORS 278]
 emb|CAL75352.1| Mox; cytochrome c like protein [Bradyrhizobium sp. ORS 278]
          Length = 401

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 1   MESTFWKTVHDGRPAKGMPAWKDVFNDDELRNVYVYLQSVQDTGESN 47
           M   FW TVH+GRP+KGMPAWK+VF DD+  ++Y +L +VQ +  +N
Sbjct: 355 MRDKFWTTVHEGRPSKGMPAWKEVFTDDQFESIYAFLLTVQSSETAN 401


>ref|NP_766972.1| hypothetical protein bll0332 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45597.1| bll0332 [Bradyrhizobium japonicum USDA 110]
          Length = 435

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 2/47 (4%)

Query: 1   MESTFWKTVHDGRPAKGMPAWKDVFNDDELRNVYVYLQSVQDTGESN 47
           M   FW TVH+GRP KGMPAWK+VF D++  +++ +L +VQ   ESN
Sbjct: 390 MREKFWTTVHEGRPTKGMPAWKEVFTDEQFDHIFSFLLTVQS--ESN 434


>ref|YP_003799490.1| putative cytochrome c553 [Candidatus Nitrospira defluvii]
 emb|CBK43565.1| putative Cytochrome c553 [Candidatus Nitrospira defluvii]
          Length = 121

 Score = 40.0 bits (92), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 1   MESTFWKTVHDGRPAKGMPAWKDVFNDDELRNVYVYLQ 38
           ++    K +HDGR    M AWK V +D+E+R+V  Y++
Sbjct: 73  LDGALMKAIHDGRKDSAMGAWKFVLSDEEIRDVTTYVR 110


>ref|YP_003799958.1| putative cytochrome c55x [Candidatus Nitrospira defluvii]
 emb|CBK44033.1| putative Cytochrome c55x [Candidatus Nitrospira defluvii]
          Length = 118

 Score = 38.9 bits (89), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 2   ESTFWKTVHDGRPAKGMPAWKDVFNDDELRNVYVYLQSV 40
           +S    T+H+G+P   MP+WK + ++ ++RNV  Y++++
Sbjct: 80  DSALLATIHEGKP--NMPSWKGLLSERDIRNVLAYIRTL 116


>ref|ZP_07750390.1| cytochrome c class I [Mucilaginibacter paludis DSM 18603]
 gb|EFQ73784.1| cytochrome c class I [Mucilaginibacter paludis DSM 18603]
          Length = 300

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 3   STFWKTVHDGRPAKGMPAWKDVFNDDELRNVYVYLQSVQDT 43
           S  +KT+  G  AKGMP W+   +  ++ +V  Y++S+ DT
Sbjct: 235 SDLFKTIKYGVAAKGMPTWEKQLSPKQISDVANYIKSIHDT 275