BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0025.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766972.1| hypothetical protein bll0332 [Bradyrhizobium ja... 288 7e-76 ref|YP_001203589.1| Mox/cytochrome c like protein [Bradyrhizobiu... 277 1e-72 gb|AAY96668.1| XoxJ [uncultured bacterium BAC10-4] 79 7e-13 ref|YP_001939648.1| Periplasmic binding protein, involved in met... 78 2e-12 gb|ABX56635.1| hypothetical protein [Methylacidiphilum infernoru... 78 2e-12 >ref|NP_766972.1| hypothetical protein bll0332 [Bradyrhizobium japonicum USDA 110] dbj|BAC45597.1| bll0332 [Bradyrhizobium japonicum USDA 110] Length = 435 Score = 288 bits (737), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 140/199 (70%), Positives = 157/199 (78%) Query: 1 VAQKLGRTVSTNWYKSYFGKRTVRETLLSKQCDAMVGLPLIDDFMGPAVIFSKPIAHEGY 60 +AQ LGR ++ +WYKSYFGKRTVR TLL KQCDAM+GLP +DFMGPAVIFS A +GY Sbjct: 113 LAQALGRPIAYDWYKSYFGKRTVRVTLLGKQCDAMIGLPRSEDFMGPAVIFSNAFAKQGY 172 Query: 61 ALVGGKDRKLAGIDDLRGLRVAVQYQSTPQNLLALRDDIQKVTVLSPEEGMTALEQGKVD 120 ALV K + L GID L+G RVAVQ+ STPQNLLA RDDIQKVTVLSPE+GM AL+QGK D Sbjct: 173 ALVAAKGQALDGIDGLKGKRVAVQFASTPQNLLASRDDIQKVTVLSPEQGMQALDQGKAD 232 Query: 121 IAFIWAPVAGWLNKTSYGDKYQIVPTEGDGLLWATAIGFAKASGALRDEVDGVLPGLQAE 180 +AFIW PVAGWLNKTSYGD+YQI TEG+GL W AIGFAK S LRD VD VLP LQ Sbjct: 233 VAFIWGPVAGWLNKTSYGDRYQIQLTEGEGLSWDAAIGFAKTSTELRDRVDAVLPQLQGT 292 Query: 181 ISALFAKYGVPNGAPVKFG 199 I AL KYG+P G P +FG Sbjct: 293 IGALAVKYGLPTGQPARFG 311 >ref|YP_001203589.1| Mox/cytochrome c like protein [Bradyrhizobium sp. ORS 278] emb|CAL75352.1| Mox; cytochrome c like protein [Bradyrhizobium sp. ORS 278] Length = 401 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 131/201 (65%), Positives = 157/201 (78%) Query: 1 VAQKLGRTVSTNWYKSYFGKRTVRETLLSKQCDAMVGLPLIDDFMGPAVIFSKPIAHEGY 60 ++Q++GR V+ +WYKSYFGKRTVR TLL +QCDAM+GLPL DFMGPAVIFSK I E Y Sbjct: 75 LSQQIGRPVTYDWYKSYFGKRTVRVTLLGRQCDAMIGLPLSSDFMGPAVIFSKKITTEAY 134 Query: 61 ALVGGKDRKLAGIDDLRGLRVAVQYQSTPQNLLALRDDIQKVTVLSPEEGMTALEQGKVD 120 ALV K L+GIDDLRG RVAVQYQ+TPQNLLA RDDI KVTVL+P+EGM AL QGK D Sbjct: 135 ALVSLKTLTLSGIDDLRGKRVAVQYQTTPQNLLAERDDIAKVTVLTPDEGMAALAQGKAD 194 Query: 121 IAFIWAPVAGWLNKTSYGDKYQIVPTEGDGLLWATAIGFAKASGALRDEVDGVLPGLQAE 180 +AF+W PVAGWLNKT+Y ++Q+ P EG GL W AIGFA+ S LRD++D LP L+ Sbjct: 195 VAFVWGPVAGWLNKTAYDGRFQVQPVEGAGLSWDAAIGFARTSTELRDQIDAALPKLEGR 254 Query: 181 ISALFAKYGVPNGAPVKFGEA 201 I+ L AKYG+P+ P+K G A Sbjct: 255 IAELAAKYGLPSEPPIKLGAA 275 >gb|AAY96668.1| XoxJ [uncultured bacterium BAC10-4] Length = 295 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 27/211 (12%) Query: 1 VAQKLGRTVSTNWYKSYFGKRTVRETLLSKQCDAMVGLPLIDDFMGPAVIFSKPIAHEGY 60 V Q+LG +VS W+ + G +R TL QC+ ++ +P D V+++KP Y Sbjct: 64 VGQELGTSVSYFWWPAQMG--LIRHTLKVDQCEVLISIPKGYD----PVLWTKPYYRSAY 117 Query: 61 ALVGGKDRKLA--GIDD--LRGLRVAVQYQSTPQNLLALRDDIQKVTVLS---------- 106 L KDR L +DD L+GLR+ V + P + LA R + + Sbjct: 118 VLAYRKDRNLGLRSLDDPALKGLRIGVHVNTPPYDALANRGLAENMVNYRLFFDPQDPDP 177 Query: 107 ---PEEGMTALEQGKVDIAFIWAPVAGWLNKTSYGDKYQIVPTEGDGLL---WATAIGFA 160 PE+ + + G +D+A W P+ G+ K + ++V + D L + ++G Sbjct: 178 SRRPEKVLQDVLSGAIDVAVAWGPMVGYFVK-QHPPALEVVALDDDAKLPMSFEFSMGVR 236 Query: 161 KASGALRDEVDGVLPGLQAEISALFAKYGVP 191 K + L+ ++G L QA+I+ + A YG+P Sbjct: 237 KGNRELKARLEGALDRRQADITRILADYGIP 267 >ref|YP_001939648.1| Periplasmic binding protein, involved in methanol oxidation [Methylacidiphilum infernorum V4] gb|ACD83050.1| Periplasmic binding protein, involved in methanol oxidation [Methylacidiphilum infernorum V4] Length = 268 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 27/211 (12%) Query: 1 VAQKLGRTVSTNWYKSYFGKRTVRETLLSKQCDAMVGLPLIDDFMGPAVIFSKPIAHEGY 60 VA L +S W+ G VR TL +C+ ++G+P G V+ +KP Y Sbjct: 46 VADTLHLPLSYYWFAHQRG--LVRNTLKMDKCNVIIGVP---SNWG-QVLTTKPYYRTSY 99 Query: 61 ALVGGKDRKLA--GIDD--LRGLRVAVQYQSTPQNLLALRDDIQKVT--------VLSPE 108 +V KD+ L+ +DD L+ L++ V S P LLA R I+ V V PE Sbjct: 100 VMVYKKDKALSIQSLDDPLLKTLKIGVLINSPPHQLLAGRGIIENVVGYSPFFDPVFHPE 159 Query: 109 EG----MTALEQGKVDIAFIWAPVAGWLNKTSYGDKYQIVPTEGDG----LLWATAIGFA 160 E + + GK+D+A +W PVAG+ K ++P D +++ ++G Sbjct: 160 ESPGRVVEDVLSGKIDVALVWGPVAGYYIKKK-NSPLVMIPLTSDNPRIPVVFDISMGVK 218 Query: 161 KASGALRDEVDGVLPGLQAEISALFAKYGVP 191 K + L+ ++D V+ EI + +YGVP Sbjct: 219 KGNQELKSKLDQVIDMKHGEILQILEEYGVP 249 >gb|ABX56635.1| hypothetical protein [Methylacidiphilum infernorum V4] Length = 288 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 27/211 (12%) Query: 1 VAQKLGRTVSTNWYKSYFGKRTVRETLLSKQCDAMVGLPLIDDFMGPAVIFSKPIAHEGY 60 VA L +S W+ G VR TL +C+ ++G+P G V+ +KP Y Sbjct: 66 VADTLHLPLSYYWFAHQRG--LVRNTLKMDKCNVIIGVP---SNWG-QVLTTKPYYRTSY 119 Query: 61 ALVGGKDRKLA--GIDD--LRGLRVAVQYQSTPQNLLALRDDIQKVT--------VLSPE 108 +V KD+ L+ +DD L+ L++ V S P LLA R I+ V V PE Sbjct: 120 VMVYKKDKALSIQSLDDPLLKTLKIGVLINSPPHQLLAGRGIIENVVGYSPFFDPVFHPE 179 Query: 109 EG----MTALEQGKVDIAFIWAPVAGWLNKTSYGDKYQIVPTEGDG----LLWATAIGFA 160 E + + GK+D+A +W PVAG+ K ++P D +++ ++G Sbjct: 180 ESPGRVVEDVLSGKIDVALVWGPVAGYYIKKK-NSPLVMIPLTSDNPRIPVVFDISMGVK 238 Query: 161 KASGALRDEVDGVLPGLQAEISALFAKYGVP 191 K + L+ ++D V+ EI + +YGVP Sbjct: 239 KGNQELKSKLDQVIDMKHGEILQILEEYGVP 269