BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0021.p (161 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766975.1| carbon monoxide dehydrogenase small chain [Brad... 307 4e-82 ref|YP_001208759.1| putative carbon-monoxide dehydrogenase small... 302 1e-80 ref|YP_001236758.1| putative carbon-monoxide dehydrogenase small... 302 1e-80 ref|ZP_08627712.1| carbon monoxide dehydrogenase small chain [Br... 292 1e-77 ref|YP_568163.1| (2Fe-2S)-binding protein [Rhodopseudomonas palu... 286 6e-76 >ref|NP_766975.1| carbon monoxide dehydrogenase small chain [Bradyrhizobium japonicum USDA 110] dbj|BAC45600.1| blr0335 [Bradyrhizobium japonicum USDA 110] Length = 269 Score = 307 bits (786), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 147/161 (91%), Positives = 156/161 (96%) Query: 1 VSTVKLTVNGKAVSVDVEDRTLLVHLLRENLNLTGTHVGCDTSQCGACVVHVDGRAVKSC 60 VSTVKLTVNGKAV+VDVEDRTLLVHLLR++LNLTGTHVGCDTSQCGACVVH+DGRAVKSC Sbjct: 109 VSTVKLTVNGKAVAVDVEDRTLLVHLLRDHLNLTGTHVGCDTSQCGACVVHMDGRAVKSC 168 Query: 61 TMLAGQAAGCNVTTIEGLAKGDELHPMQAAFRDNHGLQCGYCTPGMIMSAVDIVHRHGGK 120 TMLAGQA G +VTTIEG+AKGDELHPMQAAFRDNHGLQCGYCTPGMIMSA+DIVHRHGG+ Sbjct: 169 TMLAGQADGASVTTIEGIAKGDELHPMQAAFRDNHGLQCGYCTPGMIMSAIDIVHRHGGE 228 Query: 121 LDEETVRHELEGNICRCTGYHNIIKAVLDAAARMKVAQAAE 161 LDE TVR ELEGNICRCTGYHNI+KAVLDAA RMKVAQAAE Sbjct: 229 LDEATVRQELEGNICRCTGYHNIVKAVLDAAGRMKVAQAAE 269 >ref|YP_001208759.1| putative carbon-monoxide dehydrogenase small subunit, coxS-like protein [Bradyrhizobium sp. ORS 278] emb|CAL80544.1| Putative carbon-monoxide dehydrogenase small subunit, coxS-like protein [Bradyrhizobium sp. ORS 278] Length = 161 Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 146/161 (90%), Positives = 155/161 (96%) Query: 1 VSTVKLTVNGKAVSVDVEDRTLLVHLLRENLNLTGTHVGCDTSQCGACVVHVDGRAVKSC 60 +STVKLTVNGKAVS +VEDRTLLVHLLR++LNLTGTHVGCDTSQCGACVVH+DGRAVKSC Sbjct: 1 MSTVKLTVNGKAVSAEVEDRTLLVHLLRDHLNLTGTHVGCDTSQCGACVVHIDGRAVKSC 60 Query: 61 TMLAGQAAGCNVTTIEGLAKGDELHPMQAAFRDNHGLQCGYCTPGMIMSAVDIVHRHGGK 120 T+LAGQAAG NVTTIEG+AKGDELHPMQAAFRDNHGLQCGYCTPGMIMSA+DIVHRHGG Sbjct: 61 TVLAGQAAGANVTTIEGIAKGDELHPMQAAFRDNHGLQCGYCTPGMIMSAIDIVHRHGGH 120 Query: 121 LDEETVRHELEGNICRCTGYHNIIKAVLDAAARMKVAQAAE 161 LDE TVR ELEGNICRCTGYHNI+KAVLDAA RMKVAQAAE Sbjct: 121 LDEATVREELEGNICRCTGYHNIVKAVLDAAGRMKVAQAAE 161 >ref|YP_001236758.1| putative carbon-monoxide dehydrogenase small subunit, coxS-like protein [Bradyrhizobium sp. BTAi1] gb|ABQ32852.1| Putative carbon-monoxide dehydrogenase small subunit, coxS-like protein [Bradyrhizobium sp. BTAi1] Length = 161 Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 145/161 (90%), Positives = 156/161 (96%) Query: 1 VSTVKLTVNGKAVSVDVEDRTLLVHLLRENLNLTGTHVGCDTSQCGACVVHVDGRAVKSC 60 +STVKLTVNGKAVSV+VEDRTLLVHLLR++LNLTGTHVGCDTSQCGACVVH+DGR+VKSC Sbjct: 1 MSTVKLTVNGKAVSVEVEDRTLLVHLLRDHLNLTGTHVGCDTSQCGACVVHIDGRSVKSC 60 Query: 61 TMLAGQAAGCNVTTIEGLAKGDELHPMQAAFRDNHGLQCGYCTPGMIMSAVDIVHRHGGK 120 T+LA QAAG NVTTIEG+AKGDELHPMQAAFRDNHGLQCGYCTPGMIMSA+DIVHRHGG+ Sbjct: 61 TVLAAQAAGANVTTIEGIAKGDELHPMQAAFRDNHGLQCGYCTPGMIMSAIDIVHRHGGE 120 Query: 121 LDEETVRHELEGNICRCTGYHNIIKAVLDAAARMKVAQAAE 161 LDE TVR ELEGNICRCTGYHNI+KAVLDAA RMKVAQAAE Sbjct: 121 LDEATVREELEGNICRCTGYHNIVKAVLDAAGRMKVAQAAE 161 >ref|ZP_08627712.1| carbon monoxide dehydrogenase small chain [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09616.1| carbon monoxide dehydrogenase small chain [Bradyrhizobiaceae bacterium SG-6C] Length = 161 Score = 292 bits (747), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 138/161 (85%), Positives = 151/161 (93%) Query: 1 VSTVKLTVNGKAVSVDVEDRTLLVHLLRENLNLTGTHVGCDTSQCGACVVHVDGRAVKSC 60 +ST+KLTVNGKAVS DVEDRTLLVHLLR++L LTGTHVGCDTSQCGAC+VH+DGRAVKSC Sbjct: 1 MSTIKLTVNGKAVSADVEDRTLLVHLLRDHLGLTGTHVGCDTSQCGACIVHIDGRAVKSC 60 Query: 61 TMLAGQAAGCNVTTIEGLAKGDELHPMQAAFRDNHGLQCGYCTPGMIMSAVDIVHRHGGK 120 T L GQA+G NVTTIEG++KGD+LHPMQAAFRDNHGLQCGYCTPGMIMSA+DIVHRH G Sbjct: 61 TTLVGQASGANVTTIEGISKGDDLHPMQAAFRDNHGLQCGYCTPGMIMSAIDIVHRHQGN 120 Query: 121 LDEETVRHELEGNICRCTGYHNIIKAVLDAAARMKVAQAAE 161 LDE TVRHELEGNICRCTGYHNI+K+VLDAA RMKVA AAE Sbjct: 121 LDEATVRHELEGNICRCTGYHNIVKSVLDAAGRMKVAAAAE 161 >ref|YP_568163.1| (2Fe-2S)-binding protein [Rhodopseudomonas palustris BisB5] gb|ABE38262.1| (2Fe-2S)-binding [Rhodopseudomonas palustris BisB5] Length = 165 Score = 286 bits (733), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 137/165 (83%), Positives = 152/165 (92%), Gaps = 4/165 (2%) Query: 1 VSTVKLTVNGKAVSVDVEDRTLLVHLLRENLNLTGTHVGCDTSQCGACVVHVDGRAVKSC 60 +S V LTVNGKAV+ +VEDRTLLVHLLR++LNLTGTHVGCDTSQCGAC+VH+DGRAVKSC Sbjct: 1 MSKVSLTVNGKAVTAEVEDRTLLVHLLRDHLNLTGTHVGCDTSQCGACIVHIDGRAVKSC 60 Query: 61 TMLAGQAAGCNVTTIEGLAKGDELHPMQAAFRDNHGLQCGYCTPGMIMSAVDIVHRH--- 117 T L GQA G N+TTIEG++KGDELHPMQAAFRDNHGLQCGYCTPGMIMSA+DIV+RH Sbjct: 61 TTLVGQANGANITTIEGISKGDELHPMQAAFRDNHGLQCGYCTPGMIMSAIDIVNRHHSS 120 Query: 118 -GGKLDEETVRHELEGNICRCTGYHNIIKAVLDAAARMKVAQAAE 161 GG LDEETVR ELEGNICRCTGYHNI+K+VLDAA+RMKVAQAAE Sbjct: 121 TGGDLDEETVRQELEGNICRCTGYHNIVKSVLDAASRMKVAQAAE 165