BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0018.p (370 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766978.1| Alpha-methylacyl-CoA racemase [Bradyrhizobium j... 645 0.0 ref|YP_001236755.1| putative alpha-methylacyl-CoA racemase [Brad... 634 e-180 ref|YP_001208762.1| putative Alpha-methylacyl-CoA racemase [Brad... 634 e-179 ref|YP_004111120.1| L-carnitine dehydratase/bile acid-inducible ... 559 e-157 ref|YP_001994113.1| L-carnitine dehydratase/bile acid-inducible ... 557 e-157 >ref|NP_766978.1| Alpha-methylacyl-CoA racemase [Bradyrhizobium japonicum USDA 110] dbj|BAC45603.1| Alpha-methylacyl-CoA racemase [Bradyrhizobium japonicum USDA 110] Length = 388 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/370 (82%), Positives = 335/370 (90%) Query: 1 VLDKPASQTAARTSGPLAGFRIVEFAGIGPGPFACMLLADMGAEVITLDRIGAGKNLKAV 60 VLDK A ++ R SGPL+GFRIVEFAGIGPGPFACM+LADMGA+V+TLDR+GA K++K+V Sbjct: 19 VLDKSAPTSSVRASGPLSGFRIVEFAGIGPGPFACMMLADMGADVVTLDRVGAKKSMKSV 78 Query: 61 ATRGRKVIELDLKNKAAVAEALDLLGHADALIEGFRPGVMERLGLGPDVVLARNPKLVYG 120 A RGRKVIELDLK+KAA+A+ LDLL ADAL+EGFRPGVMERLGLGP++VLARNPKLVYG Sbjct: 79 AGRGRKVIELDLKDKAAIAQVLDLLASADALVEGFRPGVMERLGLGPEMVLARNPKLVYG 138 Query: 121 RMTGWGQEGPLANAAGHDINYISITGALAAIGTKEKPVPPLNLVGDFGGGALYLVVGVLA 180 RMTGWGQEGPLANAAGHDINYISITGALAAIG KE PVPPLNLVGDFGGGALYLVVGVLA Sbjct: 139 RMTGWGQEGPLANAAGHDINYISITGALAAIGPKEAPVPPLNLVGDFGGGALYLVVGVLA 198 Query: 181 ALLEAQKSGKGQVVDTAMCDGAASLMSMFYDMAAQGRWSGGRDQNFLDGGAHFYGVYECS 240 ALLEA +SGKGQVVD AMCDGAASLMS F+DM GRW+ GR+QNFLDGGAHFYGVYEC+ Sbjct: 199 ALLEASRSGKGQVVDAAMCDGAASLMSFFFDMTTIGRWTEGRNQNFLDGGAHFYGVYECA 258 Query: 241 CGNFISIGSIEPQFYALLRKHADLTDADFDAQMDRKAWPALKEKLTRVFKSKSRADWCAI 300 CG+F+SIGSIEPQFYALLR+HA LTDADFDAQMDRKAWPALKEKL VFKSK+R DWC I Sbjct: 259 CGHFVSIGSIEPQFYALLRQHAGLTDADFDAQMDRKAWPALKEKLKAVFKSKTREDWCKI 318 Query: 301 MEGTDICFAPILTMEEAPKHPHMAARQVFVERHGVTQPAPAPRFSRTPSAIREPELASIG 360 MEGTDICFAP+LTM EA +HPHM ARQVFVERHGV QPAPAPRFSRTPSA+REPE A I Sbjct: 319 MEGTDICFAPVLTMSEATQHPHMVARQVFVERHGVKQPAPAPRFSRTPSAVREPEGAEIA 378 Query: 361 DVTAEWKATK 370 VT W+A K Sbjct: 379 AVTKAWQAAK 388 >ref|YP_001236755.1| putative alpha-methylacyl-CoA racemase [Bradyrhizobium sp. BTAi1] gb|ABQ32849.1| Putative Alpha-methylacyl-CoA racemase (2-methylacyl-CoA racemase) (2-arylpropionyl-CoA epimerase) [Bradyrhizobium sp. BTAi1] Length = 370 Score = 634 bits (1635), Expect = e-180, Method: Compositional matrix adjust. Identities = 303/370 (81%), Positives = 332/370 (89%) Query: 1 VLDKPASQTAARTSGPLAGFRIVEFAGIGPGPFACMLLADMGAEVITLDRIGAGKNLKAV 60 +LDK A T R +GPLAGFRIVEFAGIGPGPFACMLLADMGAEV+TLDR+GA K +K+V Sbjct: 1 MLDKTAPHTGTRATGPLAGFRIVEFAGIGPGPFACMLLADMGAEVVTLDRVGARKTMKSV 60 Query: 61 ATRGRKVIELDLKNKAAVAEALDLLGHADALIEGFRPGVMERLGLGPDVVLARNPKLVYG 120 A RGRKVIELDLK+KA +A+ LDLL ADALIEGFRPGVMERLGLGP++VLARNPKLVYG Sbjct: 61 AGRGRKVIELDLKDKAVIADVLDLLAGADALIEGFRPGVMERLGLGPEIVLARNPKLVYG 120 Query: 121 RMTGWGQEGPLANAAGHDINYISITGALAAIGTKEKPVPPLNLVGDFGGGALYLVVGVLA 180 RMTGWGQ GPLA AAGHDINYISITGALAAIG KE+PVPPLNLVGDFGGGALYLVVGVLA Sbjct: 121 RMTGWGQAGPLAQAAGHDINYISITGALAAIGPKERPVPPLNLVGDFGGGALYLVVGVLA 180 Query: 181 ALLEAQKSGKGQVVDTAMCDGAASLMSMFYDMAAQGRWSGGRDQNFLDGGAHFYGVYECS 240 ALLEA KSGKGQVVDTAMCDGAASL++MF+D+ A GRW+ GR++NFLDGGAHFYGVYEC+ Sbjct: 181 ALLEASKSGKGQVVDTAMCDGAASLLAMFFDLTAMGRWTEGRERNFLDGGAHFYGVYECA 240 Query: 241 CGNFISIGSIEPQFYALLRKHADLTDADFDAQMDRKAWPALKEKLTRVFKSKSRADWCAI 300 CGNFISIGSIEPQFYALLR+HA L+D F+AQMD +AWPALKEKL VFKSK+R +WCAI Sbjct: 241 CGNFISIGSIEPQFYALLRQHAGLSDPAFEAQMDPRAWPALKEKLVAVFKSKTREEWCAI 300 Query: 301 MEGTDICFAPILTMEEAPKHPHMAARQVFVERHGVTQPAPAPRFSRTPSAIREPELASIG 360 MEGTDICFAP+LTM EAPKH HMAAR VFVERHGVTQPAPAPRFSRTPS IREPE+ IG Sbjct: 301 MEGTDICFAPVLTMSEAPKHAHMAARGVFVERHGVTQPAPAPRFSRTPSNIREPEVTEIG 360 Query: 361 DVTAEWKATK 370 V WKA + Sbjct: 361 AVVNAWKAGR 370 >ref|YP_001208762.1| putative Alpha-methylacyl-CoA racemase [Bradyrhizobium sp. ORS 278] emb|CAL80547.1| Putative Alpha-methylacyl-CoA racemase (2-methylacyl-CoA racemase) (2-arylpropionyl-CoA epimerase) [Bradyrhizobium sp. ORS 278] Length = 370 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 302/370 (81%), Positives = 333/370 (90%) Query: 1 VLDKPASQTAARTSGPLAGFRIVEFAGIGPGPFACMLLADMGAEVITLDRIGAGKNLKAV 60 +LDK A R +GPLAGFRIVEFAGIGPGPFACMLLADMGAEV+TLDR+GA K +K+V Sbjct: 1 MLDKTAPHNQTRATGPLAGFRIVEFAGIGPGPFACMLLADMGAEVVTLDRVGARKTMKSV 60 Query: 61 ATRGRKVIELDLKNKAAVAEALDLLGHADALIEGFRPGVMERLGLGPDVVLARNPKLVYG 120 A RGRKVIELDLK+KA +AE LDLL ADALIEGFRPGVMERLGLGPDVVLARNPKLVYG Sbjct: 61 AGRGRKVIELDLKDKAVIAEVLDLLAGADALIEGFRPGVMERLGLGPDVVLARNPKLVYG 120 Query: 121 RMTGWGQEGPLANAAGHDINYISITGALAAIGTKEKPVPPLNLVGDFGGGALYLVVGVLA 180 RMTGWGQEGPLA+AAGHDINYISITGALAAIG +E+PVPPLNLVGDFGGGALYLVVGVLA Sbjct: 121 RMTGWGQEGPLAHAAGHDINYISITGALAAIGPRERPVPPLNLVGDFGGGALYLVVGVLA 180 Query: 181 ALLEAQKSGKGQVVDTAMCDGAASLMSMFYDMAAQGRWSGGRDQNFLDGGAHFYGVYECS 240 ALLEA KSGKGQVVDTAMCDGAASL++MF+D+ A GRW+ GR++NFLDGGAHFYGVYEC+ Sbjct: 181 ALLEASKSGKGQVVDTAMCDGAASLLAMFFDLTAMGRWTEGRERNFLDGGAHFYGVYECA 240 Query: 241 CGNFISIGSIEPQFYALLRKHADLTDADFDAQMDRKAWPALKEKLTRVFKSKSRADWCAI 300 CGNFISIGSIEPQFY LLR+HA L+D F+AQMD +AWPALKEKL VFK+K+R +WCAI Sbjct: 241 CGNFISIGSIEPQFYMLLRQHAGLSDPAFEAQMDPRAWPALKEKLVAVFKTKTREEWCAI 300 Query: 301 MEGTDICFAPILTMEEAPKHPHMAARQVFVERHGVTQPAPAPRFSRTPSAIREPELASIG 360 MEGTD+CFAP+LTM EAPKH HMAAR VFVERHGVTQPAPAPRFSRTPS IREPE+A IG Sbjct: 301 MEGTDVCFAPVLTMSEAPKHAHMAARGVFVERHGVTQPAPAPRFSRTPSTIREPEVAEIG 360 Query: 361 DVTAEWKATK 370 + WKA + Sbjct: 361 ALVHAWKAGR 370 >ref|YP_004111120.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris DX-1] gb|ADU46387.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris DX-1] Length = 371 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 271/366 (74%), Positives = 301/366 (82%), Gaps = 2/366 (0%) Query: 1 VLDKPASQTAARTSGPLAGFRIVEFAGIGPGPFACMLLADMGAEVITLDRIGAGKNLKAV 60 V P T A SGPL+G RIVEFAGIGPGPF MLLADMGAEVITL R AG+ + Sbjct: 5 VTASPKPTTKANVSGPLSGTRIVEFAGIGPGPFGSMLLADMGAEVITLVR--AGQKPQGA 62 Query: 61 ATRGRKVIELDLKNKAAVAEALDLLGHADALIEGFRPGVMERLGLGPDVVLARNPKLVYG 120 A RGR V+ +DLK+KA+VAE L+LL ADALIEG+RPGVMERLGLGPDVV+ARNPKLVY Sbjct: 63 AARGRTVVTVDLKDKASVAEVLNLLDGADALIEGYRPGVMERLGLGPDVVMARNPKLVYA 122 Query: 121 RMTGWGQEGPLANAAGHDINYISITGALAAIGTKEKPVPPLNLVGDFGGGALYLVVGVLA 180 RMTGWGQ GPLA AAGHDINYISITGALAAIG +KPVPPLNLVGDFGGG+LYLVVG+LA Sbjct: 123 RMTGWGQTGPLAQAAGHDINYISITGALAAIGPADKPVPPLNLVGDFGGGSLYLVVGILA 182 Query: 181 ALLEAQKSGKGQVVDTAMCDGAASLMSMFYDMAAQGRWSGGRDQNFLDGGAHFYGVYECS 240 ALLEA KSGKGQVVD AMCDGAASL++MF+DM A GRW GR+ N LDGGAHFYG Y C+ Sbjct: 183 ALLEASKSGKGQVVDAAMCDGAASLITMFFDMTAAGRWKEGRESNMLDGGAHFYGTYACA 242 Query: 241 CGNFISIGSIEPQFYALLRKHADLTDADFDAQMDRKAWPALKEKLTRVFKSKSRADWCAI 300 G FISIGSIEPQFYALLR+ A LTDAD+DAQMD + WPALK+KL VFK+KSR +WC + Sbjct: 243 DGQFISIGSIEPQFYALLRQIAGLTDADYDAQMDARQWPALKQKLAAVFKTKSRDEWCKL 302 Query: 301 MEGTDICFAPILTMEEAPKHPHMAARQVFVERHGVTQPAPAPRFSRTPSAIREPELASIG 360 MEGTD+CFAP+LTM EA KHPHM AR+VF+ G TQPAPAPRFSRTPSA R P + IG Sbjct: 303 MEGTDVCFAPVLTMSEATKHPHMVAREVFINHEGHTQPAPAPRFSRTPSAARPPVHSQIG 362 Query: 361 DVTAEW 366 DV W Sbjct: 363 DVVKAW 368 >ref|YP_001994113.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris TIE-1] gb|ACF03638.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris TIE-1] Length = 371 Score = 557 bits (1436), Expect = e-157, Method: Compositional matrix adjust. Identities = 268/362 (74%), Positives = 301/362 (83%), Gaps = 2/362 (0%) Query: 5 PASQTAARTSGPLAGFRIVEFAGIGPGPFACMLLADMGAEVITLDRIGAGKNLKAVATRG 64 P T A SGPLAG RIVEFAGIGPGPF MLLADMGAEVITL R AG+ + A RG Sbjct: 9 PKPTTKANASGPLAGTRIVEFAGIGPGPFGSMLLADMGAEVITLVR--AGQKPQGAAARG 66 Query: 65 RKVIELDLKNKAAVAEALDLLGHADALIEGFRPGVMERLGLGPDVVLARNPKLVYGRMTG 124 R V+ +DLK+KA+VAE L+LL ADAL+EG+RPGVMERLGLGP++V+ARNPKLVY RMTG Sbjct: 67 RTVVTVDLKDKASVAEVLNLLDGADALVEGYRPGVMERLGLGPELVMARNPKLVYARMTG 126 Query: 125 WGQEGPLANAAGHDINYISITGALAAIGTKEKPVPPLNLVGDFGGGALYLVVGVLAALLE 184 WGQ GPLA AAGHDINYISITGALAAIG KE+PVPPLNLVGDFGGG+LYLVVG+LAALLE Sbjct: 127 WGQTGPLAQAAGHDINYISITGALAAIGPKERPVPPLNLVGDFGGGSLYLVVGILAALLE 186 Query: 185 AQKSGKGQVVDTAMCDGAASLMSMFYDMAAQGRWSGGRDQNFLDGGAHFYGVYECSCGNF 244 A KSGKGQVVD AMCDGAASL++MF+DM A GRW GR+ N LDGGAHFYG YEC+ G F Sbjct: 187 ASKSGKGQVVDAAMCDGAASLITMFFDMTAAGRWKEGRESNMLDGGAHFYGTYECADGQF 246 Query: 245 ISIGSIEPQFYALLRKHADLTDADFDAQMDRKAWPALKEKLTRVFKSKSRADWCAIMEGT 304 +SIGSIEPQFYALLR+ A LTDAD+DAQMD K WPALK+KL VFK+K+R +WC +MEGT Sbjct: 247 VSIGSIEPQFYALLRQIAGLTDADYDAQMDIKQWPALKQKLAAVFKTKTRDEWCKLMEGT 306 Query: 305 DICFAPILTMEEAPKHPHMAARQVFVERHGVTQPAPAPRFSRTPSAIREPELASIGDVTA 364 D+CFAP+LTM EA KHPHM AR+ F+ G TQPAPAPRFSRTPSA R P + IGDV Sbjct: 307 DVCFAPVLTMSEAAKHPHMVAREAFITHEGHTQPAPAPRFSRTPSAARPPVHSQIGDVVK 366 Query: 365 EW 366 W Sbjct: 367 AW 368