BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0013.p (448 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|Q89XH1.1|HGD_BRAJA RecName: Full=Homogentisate 1,2-dioxygenas... 889 0.0 ref|NP_766983.1| homogentisate 1,2-dioxygenase [Bradyrhizobium j... 889 0.0 ref|YP_001208767.1| homogentisate 1,2-dioxygenase [Bradyrhizobiu... 861 0.0 ref|YP_001236750.1| homogentisate 1,2-dioxygenase [Bradyrhizobiu... 857 0.0 ref|ZP_08629044.1| homogentisate 1,2-dioxygenase [Bradyrhizobiac... 832 0.0 >sp|Q89XH1.1|HGD_BRAJA RecName: Full=Homogentisate 1,2-dioxygenase; AltName: Full=Homogentisate oxygenase; AltName: Full=Homogentisic acid oxidase; AltName: Full=Homogentisicase Length = 448 Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/448 (92%), Positives = 437/448 (97%) Query: 1 MNINTSPDQIVRSSGQVTPGYMSGFGNSFETEALPGALPMGRNSPQRCAYGLYAEQLSGS 60 MNINTSPDQI+RSS QVTPGYMSGFGNSFETEALPGALP+GRNSPQRCAYGLYAEQLSGS Sbjct: 1 MNINTSPDQIIRSSAQVTPGYMSGFGNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGS 60 Query: 61 PFTAPRGTNERSWLYRIRPSVRHSGRFAKADSGLWRTAPCHEYDMPIAQLRWDPAPIPKQ 120 PFTAPRGTNERSWLYRIRPSV+HSGRF KAD+GLWR+APCHEYD+PIAQ+RWDP P+PK+ Sbjct: 61 PFTAPRGTNERSWLYRIRPSVKHSGRFEKADAGLWRSAPCHEYDLPIAQMRWDPTPVPKE 120 Query: 121 DMTFLQGVQTMTTAGDANTQAGMAAHIYLITKSMVDQHFYNADGEMMFVLQQGNLRFVTE 180 ++TF+QGVQTMTTAGD NTQAGMAAH+YLITKSMVDQHFYNADGE+MFVLQQGNLR VTE Sbjct: 121 EVTFVQGVQTMTTAGDVNTQAGMAAHVYLITKSMVDQHFYNADGELMFVLQQGNLRLVTE 180 Query: 181 FGRIDAEPGEIVVIPRGVKFRVEIPGGPARGYLCENYGGAFTLPERGPIGANCLANSRDF 240 FGRIDAEPGEIVVIPRGVKFRVEIP GPARGYLCENYGGAFTLPERGPIGANCLAN+RDF Sbjct: 181 FGRIDAEPGEIVVIPRGVKFRVEIPNGPARGYLCENYGGAFTLPERGPIGANCLANARDF 240 Query: 241 LTPVAAYEDQDTPTELYVKWGGSLFKTTLPHSPIDVVAWHGNYAPYKYDLRTFSPVGAIA 300 LTPVA YED+DTPTEL+VKWGGSLFKTTLPHSPIDVVAWHGNYAPYKYDLRTFSPVGAI Sbjct: 241 LTPVANYEDKDTPTELFVKWGGSLFKTTLPHSPIDVVAWHGNYAPYKYDLRTFSPVGAIG 300 Query: 301 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV 360 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV Sbjct: 301 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV 360 Query: 361 YDAKPQGFVPGGISLHNCMLPHGPDREAFEHASNSELKPVKLTGTMAFMFETRFPQRVTQ 420 YDAKPQGFVPGG+SLHNCMLPHGPDR+AFEHASN ELKPVKLTGTMAFMFETR+PQRVT Sbjct: 361 YDAKPQGFVPGGMSLHNCMLPHGPDRDAFEHASNGELKPVKLTGTMAFMFETRYPQRVTA 420 Query: 421 HAATSSTLQDDYSDCWKGLEKKFDPNKP 448 HAA +STLQDDY+DCWKGLEK+FDPN+P Sbjct: 421 HAANASTLQDDYADCWKGLEKRFDPNRP 448 >ref|NP_766983.1| homogentisate 1,2-dioxygenase [Bradyrhizobium japonicum USDA 110] dbj|BAC45608.1| homogentisate 1,2-dioxygenase [Bradyrhizobium japonicum USDA 110] Length = 458 Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/448 (92%), Positives = 437/448 (97%) Query: 1 MNINTSPDQIVRSSGQVTPGYMSGFGNSFETEALPGALPMGRNSPQRCAYGLYAEQLSGS 60 MNINTSPDQI+RSS QVTPGYMSGFGNSFETEALPGALP+GRNSPQRCAYGLYAEQLSGS Sbjct: 11 MNINTSPDQIIRSSAQVTPGYMSGFGNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGS 70 Query: 61 PFTAPRGTNERSWLYRIRPSVRHSGRFAKADSGLWRTAPCHEYDMPIAQLRWDPAPIPKQ 120 PFTAPRGTNERSWLYRIRPSV+HSGRF KAD+GLWR+APCHEYD+PIAQ+RWDP P+PK+ Sbjct: 71 PFTAPRGTNERSWLYRIRPSVKHSGRFEKADAGLWRSAPCHEYDLPIAQMRWDPTPVPKE 130 Query: 121 DMTFLQGVQTMTTAGDANTQAGMAAHIYLITKSMVDQHFYNADGEMMFVLQQGNLRFVTE 180 ++TF+QGVQTMTTAGD NTQAGMAAH+YLITKSMVDQHFYNADGE+MFVLQQGNLR VTE Sbjct: 131 EVTFVQGVQTMTTAGDVNTQAGMAAHVYLITKSMVDQHFYNADGELMFVLQQGNLRLVTE 190 Query: 181 FGRIDAEPGEIVVIPRGVKFRVEIPGGPARGYLCENYGGAFTLPERGPIGANCLANSRDF 240 FGRIDAEPGEIVVIPRGVKFRVEIP GPARGYLCENYGGAFTLPERGPIGANCLAN+RDF Sbjct: 191 FGRIDAEPGEIVVIPRGVKFRVEIPNGPARGYLCENYGGAFTLPERGPIGANCLANARDF 250 Query: 241 LTPVAAYEDQDTPTELYVKWGGSLFKTTLPHSPIDVVAWHGNYAPYKYDLRTFSPVGAIA 300 LTPVA YED+DTPTEL+VKWGGSLFKTTLPHSPIDVVAWHGNYAPYKYDLRTFSPVGAI Sbjct: 251 LTPVANYEDKDTPTELFVKWGGSLFKTTLPHSPIDVVAWHGNYAPYKYDLRTFSPVGAIG 310 Query: 301 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV 360 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV Sbjct: 311 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV 370 Query: 361 YDAKPQGFVPGGISLHNCMLPHGPDREAFEHASNSELKPVKLTGTMAFMFETRFPQRVTQ 420 YDAKPQGFVPGG+SLHNCMLPHGPDR+AFEHASN ELKPVKLTGTMAFMFETR+PQRVT Sbjct: 371 YDAKPQGFVPGGMSLHNCMLPHGPDRDAFEHASNGELKPVKLTGTMAFMFETRYPQRVTA 430 Query: 421 HAATSSTLQDDYSDCWKGLEKKFDPNKP 448 HAA +STLQDDY+DCWKGLEK+FDPN+P Sbjct: 431 HAANASTLQDDYADCWKGLEKRFDPNRP 458 >ref|YP_001208767.1| homogentisate 1,2-dioxygenase [Bradyrhizobium sp. ORS 278] emb|CAL80552.1| homogentisate 1,2-dioxygenase [Bradyrhizobium sp. ORS 278] Length = 449 Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/448 (89%), Positives = 429/448 (95%) Query: 1 MNINTSPDQIVRSSGQVTPGYMSGFGNSFETEALPGALPMGRNSPQRCAYGLYAEQLSGS 60 MNINTSPD++ R++GQVTPGYMSGFGNSFETEALPGALP+GRNSPQRCAYGLYAEQLSGS Sbjct: 2 MNINTSPDRLSRATGQVTPGYMSGFGNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGS 61 Query: 61 PFTAPRGTNERSWLYRIRPSVRHSGRFAKADSGLWRTAPCHEYDMPIAQLRWDPAPIPKQ 120 PFTAPRG+NERSWLYRIRPSV+HSGRFAK D+GLWRTAPCHE ++ + QLRWDP P+P Sbjct: 62 PFTAPRGSNERSWLYRIRPSVKHSGRFAKVDAGLWRTAPCHEQEITVQQLRWDPTPMPAG 121 Query: 121 DMTFLQGVQTMTTAGDANTQAGMAAHIYLITKSMVDQHFYNADGEMMFVLQQGNLRFVTE 180 ++TFLQGVQTMTTAGDA TQAGMAAH+Y+ITKSMVDQHFYNADGE+MFVLQQG L FVTE Sbjct: 122 EVTFLQGVQTMTTAGDAATQAGMAAHVYVITKSMVDQHFYNADGELMFVLQQGRLLFVTE 181 Query: 181 FGRIDAEPGEIVVIPRGVKFRVEIPGGPARGYLCENYGGAFTLPERGPIGANCLANSRDF 240 FGRIDAEPGEIVVIPRGVKFRVEIP GPARGYLCENYGGAFTLPERGPIGANCLAN+RDF Sbjct: 182 FGRIDAEPGEIVVIPRGVKFRVEIPAGPARGYLCENYGGAFTLPERGPIGANCLANARDF 241 Query: 241 LTPVAAYEDQDTPTELYVKWGGSLFKTTLPHSPIDVVAWHGNYAPYKYDLRTFSPVGAIA 300 LTPVA+YED+DTPTELYVKWGG+LFKT L HSPIDVVAWHGNYAPYKYDLRTFSPVGAI Sbjct: 242 LTPVASYEDKDTPTELYVKWGGALFKTELKHSPIDVVAWHGNYAPYKYDLRTFSPVGAIG 301 Query: 301 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV 360 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV Sbjct: 302 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV 361 Query: 361 YDAKPQGFVPGGISLHNCMLPHGPDREAFEHASNSELKPVKLTGTMAFMFETRFPQRVTQ 420 YDAKPQGFVPGG+SLHNCMLPHGPDREAF+HASNSELKPVKLTGTMAFMFETRFPQR+T+ Sbjct: 362 YDAKPQGFVPGGMSLHNCMLPHGPDREAFDHASNSELKPVKLTGTMAFMFETRFPQRITR 421 Query: 421 HAATSSTLQDDYSDCWKGLEKKFDPNKP 448 HAA S TLQ DY+DCW GLEK+FDPN+P Sbjct: 422 HAAESGTLQPDYADCWNGLEKRFDPNRP 449 >ref|YP_001236750.1| homogentisate 1,2-dioxygenase [Bradyrhizobium sp. BTAi1] gb|ABQ32844.1| homogentisate 1,2-dioxygenase [Bradyrhizobium sp. BTAi1] Length = 449 Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/448 (88%), Positives = 427/448 (95%) Query: 1 MNINTSPDQIVRSSGQVTPGYMSGFGNSFETEALPGALPMGRNSPQRCAYGLYAEQLSGS 60 MNINTSPDQ+ R+S QVTPGYMSGFGNSFETEALPGALP+GRNSPQRCAYGLYAEQLSGS Sbjct: 2 MNINTSPDQLSRASAQVTPGYMSGFGNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGS 61 Query: 61 PFTAPRGTNERSWLYRIRPSVRHSGRFAKADSGLWRTAPCHEYDMPIAQLRWDPAPIPKQ 120 PFTAPRG+NERSWLYRIRPSV+HSGRFAK D+GLWRTAPCHE ++ + QLRWDP P+P Sbjct: 62 PFTAPRGSNERSWLYRIRPSVKHSGRFAKVDAGLWRTAPCHEQEITVQQLRWDPTPVPSG 121 Query: 121 DMTFLQGVQTMTTAGDANTQAGMAAHIYLITKSMVDQHFYNADGEMMFVLQQGNLRFVTE 180 ++TFLQGVQTMTTAGDA TQ+GMAAH+Y+ITKSMVDQHFYNADGE+MFVLQQG L FVTE Sbjct: 122 EVTFLQGVQTMTTAGDAATQSGMAAHVYVITKSMVDQHFYNADGELMFVLQQGRLLFVTE 181 Query: 181 FGRIDAEPGEIVVIPRGVKFRVEIPGGPARGYLCENYGGAFTLPERGPIGANCLANSRDF 240 FGRIDA PGEIV+IPRGVKFRVE+P GPARGYLCENYGGAFTLPERGPIGANCLAN+RDF Sbjct: 182 FGRIDAAPGEIVMIPRGVKFRVELPAGPARGYLCENYGGAFTLPERGPIGANCLANARDF 241 Query: 241 LTPVAAYEDQDTPTELYVKWGGSLFKTTLPHSPIDVVAWHGNYAPYKYDLRTFSPVGAIA 300 LTPVA+YED+DTPTELYVKWGG+LFKT L HSPIDVVAWHGNYAPYKYDLRTFSPVGAI Sbjct: 242 LTPVASYEDKDTPTELYVKWGGALFKTELKHSPIDVVAWHGNYAPYKYDLRTFSPVGAIG 301 Query: 301 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV 360 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV Sbjct: 302 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV 361 Query: 361 YDAKPQGFVPGGISLHNCMLPHGPDREAFEHASNSELKPVKLTGTMAFMFETRFPQRVTQ 420 YDAKPQGFVPGG+SLHNCMLPHGPDREAF+HASN ELKPVKLTGTMAFMFETRFPQR+T+ Sbjct: 362 YDAKPQGFVPGGMSLHNCMLPHGPDREAFDHASNGELKPVKLTGTMAFMFETRFPQRITK 421 Query: 421 HAATSSTLQDDYSDCWKGLEKKFDPNKP 448 HAA SSTLQ DY+DCW GLEK+FDPN+P Sbjct: 422 HAAESSTLQPDYADCWNGLEKRFDPNRP 449 >ref|ZP_08629044.1| homogentisate 1,2-dioxygenase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08403.1| homogentisate 1,2-dioxygenase [Bradyrhizobiaceae bacterium SG-6C] Length = 448 Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/448 (87%), Positives = 417/448 (93%) Query: 1 MNINTSPDQIVRSSGQVTPGYMSGFGNSFETEALPGALPMGRNSPQRCAYGLYAEQLSGS 60 MNINT+P + R++ VTPGYMSGFGNSFETEAL GALP+GRNSPQ CAYGLYAEQLSGS Sbjct: 1 MNINTAPGAVNRNAVNVTPGYMSGFGNSFETEALAGALPIGRNSPQNCAYGLYAEQLSGS 60 Query: 61 PFTAPRGTNERSWLYRIRPSVRHSGRFAKADSGLWRTAPCHEYDMPIAQLRWDPAPIPKQ 120 PFTAPRGTNERSWLYRIRPSV+HSGRF K D+G WRTAPC EYD+PIAQLRWDP P+PK+ Sbjct: 61 PFTAPRGTNERSWLYRIRPSVKHSGRFTKVDAGHWRTAPCTEYDLPIAQLRWDPLPLPKE 120 Query: 121 DMTFLQGVQTMTTAGDANTQAGMAAHIYLITKSMVDQHFYNADGEMMFVLQQGNLRFVTE 180 TFLQGV TMTTAGDA TQAGMAAH+YLITKSMVDQ+FYNADGEMMFV Q+GNLR VTE Sbjct: 121 GQTFLQGVYTMTTAGDAGTQAGMAAHVYLITKSMVDQNFYNADGEMMFVAQEGNLRLVTE 180 Query: 181 FGRIDAEPGEIVVIPRGVKFRVEIPGGPARGYLCENYGGAFTLPERGPIGANCLANSRDF 240 FG ID EPGEI VIPRGVKFRVEIP GPARGYLCENYGGAFTLPERGPIGANCLANSRDF Sbjct: 181 FGIIDIEPGEIAVIPRGVKFRVEIPNGPARGYLCENYGGAFTLPERGPIGANCLANSRDF 240 Query: 241 LTPVAAYEDQDTPTELYVKWGGSLFKTTLPHSPIDVVAWHGNYAPYKYDLRTFSPVGAIA 300 LTPVAAYED++TPTELYVKWGGSLF T LP+SPIDVVAWHGNYAPYKYDLRTFSPVGAI Sbjct: 241 LTPVAAYEDKETPTELYVKWGGSLFMTRLPYSPIDVVAWHGNYAPYKYDLRTFSPVGAIG 300 Query: 301 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGV 360 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVA+NTFRPPWYHMNIMSEFMGL+YG Sbjct: 301 FDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVAENTFRPPWYHMNIMSEFMGLLYGA 360 Query: 361 YDAKPQGFVPGGISLHNCMLPHGPDREAFEHASNSELKPVKLTGTMAFMFETRFPQRVTQ 420 YDAKP GFVPGGISLHN MLPHGPDREAF+HASN ELKPVKLTGTMAFMFETRFPQRVTQ Sbjct: 361 YDAKPHGFVPGGISLHNMMLPHGPDREAFDHASNGELKPVKLTGTMAFMFETRFPQRVTQ 420 Query: 421 HAATSSTLQDDYSDCWKGLEKKFDPNKP 448 AAT+S LQDDY+DCW+GLE++FDP+KP Sbjct: 421 FAATTSALQDDYADCWQGLERRFDPSKP 448