BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0005.p (316 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766992.1| hypothetical protein blr0352 [Bradyrhizobium ja... 423 e-116 ref|YP_001208779.1| caspase-like domain-containing protein [Brad... 402 e-110 ref|YP_568148.1| peptidase C14, caspase catalytic subunit p20 [R... 401 e-110 ref|YP_001236738.1| caspase-like domain-containing protein [Brad... 392 e-107 ref|YP_319631.1| peptidase C14 [Nitrobacter winogradskyi Nb-255]... 391 e-107 >ref|NP_766992.1| hypothetical protein blr0352 [Bradyrhizobium japonicum USDA 110] dbj|BAC45617.1| blr0352 [Bradyrhizobium japonicum USDA 110] Length = 360 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 213/257 (82%), Positives = 232/257 (90%), Gaps = 1/257 (0%) Query: 1 MKIRLALLATLIFSIAAPTLSFAAGDRFALVIGNAKYPDADAPLKEPANDARDVAEELKR 60 MKIR L L+ S+ S AAGDR+ALVIGNAKYPDADAPLKEP NDARDVA+ELKR Sbjct: 1 MKIRFLFLLPLLVSLVPTAPSLAAGDRYALVIGNAKYPDADAPLKEPLNDARDVADELKR 60 Query: 61 DGFTVEVGENLTGDGMRRAFDRLYGKIKPGSVALIFFSGYGIQSNRQSYMIPIDAQIWAE 120 DGF+VE+GENLTGDGMRRAFD+LYGKIKPGSVAL+FFSG+GIQS RQSYM+PIDAQIW E Sbjct: 61 DGFSVEIGENLTGDGMRRAFDKLYGKIKPGSVALVFFSGFGIQSARQSYMLPIDAQIWTE 120 Query: 121 ADVRRDGFSLETVLGEINSRGAGVKIALIDASRRNPFERRFRSFSAGLAPVIAPNGTLVM 180 +DVRRDGFSLE VLGE+N+RGAGVKIALIDASRRNPFERRFRSFSAGL PVIAPNGTLVM Sbjct: 121 SDVRRDGFSLEAVLGELNTRGAGVKIALIDASRRNPFERRFRSFSAGLTPVIAPNGTLVM 180 Query: 181 YSAALSSVVSDNGSDHSLFVRELLKEIRTPDLMAEETLNRTRVGVTRASRQEQVPWISSS 240 YSAAL+SVVSD G +HSLFV+ELLKEIR PDLMAEETLNRT++GVTRASR EQVPWISSS Sbjct: 181 YSAALASVVSDAGGEHSLFVQELLKEIRVPDLMAEETLNRTKMGVTRASRGEQVPWISSS 240 Query: 241 LAEDFSFIPSGTXGAGP 257 LAEDFSFIP G G+ P Sbjct: 241 LAEDFSFIP-GAGGSRP 256 >ref|YP_001208779.1| caspase-like domain-containing protein [Bradyrhizobium sp. ORS 278] emb|CAL80564.1| putative Peptidase, Caspase-like domain and TPR repeats [Bradyrhizobium sp. ORS 278] Length = 529 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 204/261 (78%), Positives = 221/261 (84%), Gaps = 5/261 (1%) Query: 1 MKIRLALLATLIFSIAAPT----LSFAAGDRFALVIGNAKYPDADAPLKEPANDARDVAE 56 M RL L L S+A + AAGDRFALV+GNAKYPDADAPLKEP NDARD+ + Sbjct: 21 MTFRLLFLLALTVSVATSVGVSRPAHAAGDRFALVVGNAKYPDADAPLKEPINDARDLTD 80 Query: 57 ELKRDGFTVEVGENLTGDGMRRAFDRLYGKIKPGSVALIFFSGYGIQSNRQSYMIPIDAQ 116 ELKRDGFTVE EN +GD MRRA +RLYGKIKPGSVAL+FFSGYGIQS+R SYMIP+DAQ Sbjct: 81 ELKRDGFTVETLENASGDTMRRALERLYGKIKPGSVALLFFSGYGIQSSRTSYMIPVDAQ 140 Query: 117 IWAEADVRRDGFSLETVLGEINSRGAGVKIALIDASRRNPFERRFRSFSAGLAPVIAPNG 176 IW EADVRRDG SLE VL EINSRGAGVKIAL+DASRRNP+ERRFR+ S+GLAPVIAP+G Sbjct: 141 IWQEADVRRDGISLEQVLQEINSRGAGVKIALLDASRRNPYERRFRTASSGLAPVIAPSG 200 Query: 177 TLVMYSAALSSVVSDNGSDHSLFVRELLKEIRTPDLMAEETLNRTRVGVTRASRQEQVPW 236 TLVMYSAALSSVVSD G D SLFV+ELLKEIR PDL AEETLNRTRVGVTRASR EQVPW Sbjct: 201 TLVMYSAALSSVVSDTGRDRSLFVQELLKEIRVPDLTAEETLNRTRVGVTRASRSEQVPW 260 Query: 237 ISSSLAEDFSFIPSGTXGAGP 257 ISSSLAEDFSF+P GT G P Sbjct: 261 ISSSLAEDFSFVP-GTGGGRP 280 >ref|YP_568148.1| peptidase C14, caspase catalytic subunit p20 [Rhodopseudomonas palustris BisB5] gb|ABE38247.1| peptidase C14, caspase catalytic subunit p20 [Rhodopseudomonas palustris BisB5] Length = 528 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/314 (66%), Positives = 230/314 (73%), Gaps = 29/314 (9%) Query: 1 MKIRLALLATLIFSIAAPTLSFAA---GDRFALVIGNAKYPDADAPLKEPANDARDVAEE 57 M IR+AL L +A T S A G R ALVIGNAKYPDA+ PL +P NDARD+A+E Sbjct: 1 MNIRIALFVLLTLLMAPATRSQADDLRGGRVALVIGNAKYPDAEKPLTQPVNDARDLADE 60 Query: 58 LKRDGFTVEVGENLTGDGMRRAFDRLYGKIKPGSVALIFFSGYGIQSNRQSYMIPIDAQI 117 LKRDGF V+ GENL GD MRRAFDRLY ++KPGSVAL+FFSG+GIQS RQSYMIP+DAQI Sbjct: 61 LKRDGFDVDAGENLNGDAMRRAFDRLYNRVKPGSVALVFFSGFGIQSGRQSYMIPVDAQI 120 Query: 118 WAEADVRRDGFSLETVLGEINSRGAGVKIALIDASRRNPFERRFRSFSAGLAPVIAPNGT 177 W E DVRRDG SLETVLGE+NSRGA VKIALIDASRRNPFERRFRSFSAGLAP+IAP G+ Sbjct: 121 WTEPDVRRDGISLETVLGELNSRGATVKIALIDASRRNPFERRFRSFSAGLAPIIAPGGS 180 Query: 178 LVMYSAALSSVVSDNGSDHSLFVRELLKEIRTPDLMAEETLNRTRVGVTRASRQEQVPWI 237 LVMYSAALSSVVSDNG DHSLFV ELLKEIR P L AEE LNRTRVGVTRASR EQVPWI Sbjct: 181 LVMYSAALSSVVSDNGGDHSLFVSELLKEIRVPGLGAEEALNRTRVGVTRASRSEQVPWI 240 Query: 238 SSSLAEDFSFIPSGTXGAGPRRVAVTRGGSGTAGRPSAGSARSNADTARGNPXQRRPHRH 297 SSSLAEDFSF+PS A ADT++ NP R Sbjct: 241 SSSLAEDFSFVPSSKTAA--------------------------ADTSKANPIVDRTPPE 274 Query: 298 PSQRRPRSPCRRPP 311 P+ + +P P Sbjct: 275 PAAKSNPAPVETKP 288 >ref|YP_001236738.1| caspase-like domain-containing protein [Bradyrhizobium sp. BTAi1] gb|ABQ32832.1| putative Peptidase, Caspase-like domain and TPR repeats [Bradyrhizobium sp. BTAi1] Length = 518 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 200/257 (77%), Positives = 220/257 (85%), Gaps = 1/257 (0%) Query: 1 MKIRLALLATLIFSIAAPTLSFAAGDRFALVIGNAKYPDADAPLKEPANDARDVAEELKR 60 M RL LL L+F++A + AAGDR ALVIGNAKYPDA+APLKEP NDARD+ +ELKR Sbjct: 10 MTARLLLLLGLMFAVAFSGPALAAGDRIALVIGNAKYPDAEAPLKEPINDARDLTDELKR 69 Query: 61 DGFTVEVGENLTGDGMRRAFDRLYGKIKPGSVALIFFSGYGIQSNRQSYMIPIDAQIWAE 120 DGFTVE EN TG+ MRR +RLYG IKPGSVAL+FFSG+GIQSNR SYMIP+DAQIW E Sbjct: 70 DGFTVETLENATGEAMRRGLERLYGSIKPGSVALVFFSGFGIQSNRTSYMIPVDAQIWQE 129 Query: 121 ADVRRDGFSLETVLGEINSRGAGVKIALIDASRRNPFERRFRSFSAGLAPVIAPNGTLVM 180 ADVRRDG SLE VL EINSRGAGVKIAL+DASRRNP+ERRFR+ S+GLAPVIAP+GTLVM Sbjct: 130 ADVRRDGISLEQVLQEINSRGAGVKIALLDASRRNPYERRFRTASSGLAPVIAPSGTLVM 189 Query: 181 YSAALSSVVSDNGSDHSLFVRELLKEIRTPDLMAEETLNRTRVGVTRASRQEQVPWISSS 240 YSAALS+VVSD G D SLFV+ELLKEIR PDL AEETLNRTRVGVTRASR EQVPWISSS Sbjct: 190 YSAALSAVVSDTGRDRSLFVQELLKEIRVPDLTAEETLNRTRVGVTRASRSEQVPWISSS 249 Query: 241 LAEDFSFIPSGTXGAGP 257 LAEDFSF+P G G P Sbjct: 250 LAEDFSFVP-GAGGVRP 265 >ref|YP_319631.1| peptidase C14 [Nitrobacter winogradskyi Nb-255] gb|ABA06279.1| Peptidase C14 [Nitrobacter winogradskyi Nb-255] Length = 527 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/254 (77%), Positives = 218/254 (85%), Gaps = 5/254 (1%) Query: 1 MKIRLALLA--TLIFSIAAPTLSFAAGD---RFALVIGNAKYPDADAPLKEPANDARDVA 55 M IR+A+LA TL ++A + AA D R ALVIGNA YPD++APLKEP NDARDVA Sbjct: 1 MNIRVAVLAVLTLTMALAMGPAASAATDGSARVALVIGNAVYPDSEAPLKEPINDARDVA 60 Query: 56 EELKRDGFTVEVGENLTGDGMRRAFDRLYGKIKPGSVALIFFSGYGIQSNRQSYMIPIDA 115 ELKR+GF VE GEN+TGD MR A RLY +IKPGSVALIFFSGYGIQS RQSY+IP+DA Sbjct: 61 AELKRNGFDVETGENMTGDAMRLALKRLYTRIKPGSVALIFFSGYGIQSGRQSYLIPVDA 120 Query: 116 QIWAEADVRRDGFSLETVLGEINSRGAGVKIALIDASRRNPFERRFRSFSAGLAPVIAPN 175 Q+W EADVRRDGFSLET+LGEIN+RGAGVKIAL+DASRRNPFERRFRSFSAGLAPVIAP+ Sbjct: 121 QLWTEADVRRDGFSLETILGEINNRGAGVKIALLDASRRNPFERRFRSFSAGLAPVIAPS 180 Query: 176 GTLVMYSAALSSVVSDNGSDHSLFVRELLKEIRTPDLMAEETLNRTRVGVTRASRQEQVP 235 G+LVMYSAALSSVV D +DHSLFV ELLKEIR P L AE+TLNRTRVGVTRASR EQVP Sbjct: 181 GSLVMYSAALSSVVGDVSADHSLFVSELLKEIRVPGLTAEQTLNRTRVGVTRASRAEQVP 240 Query: 236 WISSSLAEDFSFIP 249 WISSSLAEDF F+P Sbjct: 241 WISSSLAEDFYFVP 254