BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0003.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766994.1| hypothetical protein blr0354 [Bradyrhizobium ja... 307 8e-82 ref|YP_001208778.1| hypothetical protein BRADO6977 [Bradyrhizobi... 271 4e-71 ref|YP_001236739.1| hypothetical protein BBta_0555 [Bradyrhizobi... 269 2e-70 ref|NP_769057.1| hypothetical protein bll2417 [Bradyrhizobium ja... 254 4e-66 ref|NP_950012.1| outer membrane protein OprF [Rhodopseudomonas p... 252 3e-65 >ref|NP_766994.1| hypothetical protein blr0354 [Bradyrhizobium japonicum USDA 110] dbj|BAC45619.1| blr0354 [Bradyrhizobium japonicum USDA 110] Length = 250 Score = 307 bits (786), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 156/215 (72%), Positives = 178/215 (82%), Gaps = 8/215 (3%) Query: 9 AIVSFMTVGAALSFGMAVACAGD------VTDDQIIKALTP-EKQPLTRGLSAGPQATSP 61 AI+S M +GAALS + A AGD VT+D+I++AL P +K+PLTRGLS PQA P Sbjct: 37 AILSIMAIGAALSLPASPAFAGDDGNSKNVTEDEIVRALAPPQKKPLTRGLSIAPQA-DP 95 Query: 62 ELNADQAKFVQSVRGRATRSLSSAEREEIATIVQDKPKIDLEINFDYNSADISAKSLPSV 121 +A + K +QSVRGR+TRSLSS EREEIA++ +DKP IDLEI FDYNSA+IS KSL SV Sbjct: 96 APSASETKLIQSVRGRSTRSLSSTEREEIASVAKDKPNIDLEITFDYNSANISTKSLASV 155 Query: 122 QALGRALTNQDLKGSTFVVAGHTDAAGGEDYNQGLSERRADAIKRYLVDKYGINGTDLVT 181 QALGRALT+ DLKGSTFVVAGHTDAAGGE YNQ LSERRADAIKRYLV+KY I+ TDLVT Sbjct: 156 QALGRALTSPDLKGSTFVVAGHTDAAGGESYNQDLSERRADAIKRYLVEKYSISATDLVT 215 Query: 182 VGYGKSKLKDPSHPMAEVNRRVQVVNVENKATAAK 216 VGYGKSKLKDPS PMAEVNRRVQVVN+ENK TA+K Sbjct: 216 VGYGKSKLKDPSQPMAEVNRRVQVVNMENKTTASK 250 >ref|YP_001208778.1| hypothetical protein BRADO6977 [Bradyrhizobium sp. ORS 278] emb|CAL80563.1| conserved hypothetical protein; putative OmpA-like transmembrane domains [Bradyrhizobium sp. ORS 278] Length = 213 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 143/209 (68%), Positives = 170/209 (81%), Gaps = 3/209 (1%) Query: 10 IVSFMTVGAALSFGMAVACAGDVTDDQIIKALTPEKQPLTRGLSAGPQATSPELNADQA- 68 + + ++ AAL AVA A DVT+DQI++AL K+PLTRGLS PQA + A+ Sbjct: 6 VATMLSASAALIATQAVA-AEDVTEDQIVRALAGPKKPLTRGLSMAPQAEAAPAAANPEQ 64 Query: 69 -KFVQSVRGRATRSLSSAEREEIATIVQDKPKIDLEINFDYNSADISAKSLPSVQALGRA 127 KF+QS+RGRATRSLSSAEREEIA + + KP IDLEI FDYNSA+IS KS+ SVQALGRA Sbjct: 65 DKFLQSIRGRATRSLSSAEREEIAAVAKTKPNIDLEITFDYNSANISQKSMASVQALGRA 124 Query: 128 LTNQDLKGSTFVVAGHTDAAGGEDYNQGLSERRADAIKRYLVDKYGINGTDLVTVGYGKS 187 LT+ DLKGSTFV+AGHTDAAG + YNQ LSERRAD+IKRYLV+K+GI G+DLVTVGYGKS Sbjct: 125 LTSPDLKGSTFVLAGHTDAAGADAYNQDLSERRADSIKRYLVEKFGIAGSDLVTVGYGKS 184 Query: 188 KLKDPSHPMAEVNRRVQVVNVENKATAAK 216 KLKDPS P+AEVNRRVQVVN+++K AAK Sbjct: 185 KLKDPSQPLAEVNRRVQVVNMQSKTAAAK 213 >ref|YP_001236739.1| hypothetical protein BBta_0555 [Bradyrhizobium sp. BTAi1] gb|ABQ32833.1| hypothetical protein BBta_0555 [Bradyrhizobium sp. BTAi1] Length = 212 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 137/190 (72%), Positives = 160/190 (84%), Gaps = 1/190 (0%) Query: 28 CAGDVTDDQIIKALTPEKQPLTRGLS-AGPQATSPELNADQAKFVQSVRGRATRSLSSAE 86 A DVT+DQI++AL K+PLTRGLS + P +P +Q KF+QS+RGR+TRSLS+AE Sbjct: 23 AAEDVTEDQIVRALAGPKKPLTRGLSLSPPSEAAPAAAPEQDKFLQSIRGRSTRSLSTAE 82 Query: 87 REEIATIVQDKPKIDLEINFDYNSADISAKSLPSVQALGRALTNQDLKGSTFVVAGHTDA 146 REEIA + + KP IDLEI FDYNSA+IS KSL SVQALGRALT+ DLKGSTFVVAGHTDA Sbjct: 83 REEIAAVAKSKPNIDLEITFDYNSANISQKSLASVQALGRALTSPDLKGSTFVVAGHTDA 142 Query: 147 AGGEDYNQGLSERRADAIKRYLVDKYGINGTDLVTVGYGKSKLKDPSHPMAEVNRRVQVV 206 AGG+ YNQ LSERRAD+IKRYLV+K+GI G DLVTVGYGKSKLKDPS P+AEVNRRVQVV Sbjct: 143 AGGDAYNQDLSERRADSIKRYLVEKFGIAGADLVTVGYGKSKLKDPSQPLAEVNRRVQVV 202 Query: 207 NVENKATAAK 216 N+++K AAK Sbjct: 203 NMQSKTAAAK 212 >ref|NP_769057.1| hypothetical protein bll2417 [Bradyrhizobium japonicum USDA 110] dbj|BAC47682.1| bll2417 [Bradyrhizobium japonicum USDA 110] Length = 213 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 131/205 (63%), Positives = 163/205 (79%), Gaps = 6/205 (2%) Query: 14 MTVGAALSFGMAVACAGD--VTDDQIIKALTPEKQPLTRGLSAGPQATSPELNADQAKFV 71 +T+ AALS +A AGD ++ D+I+ AL P +P+TRGLSAGPQA P + A +A F+ Sbjct: 13 ITLTAALSMTAGLALAGDNNISSDKILDALKP--KPVTRGLSAGPQA-DPAVQAKEATFL 69 Query: 72 QSVRGRATRSLSSAEREEIATIVQDKPKIDLEINFDYNSADISAKSLPSVQALGRALTNQ 131 +VR R+TRSLS+ ERE+IA + KPKIDLEI FDYNSADI+ S+PSVQALG+AL++ Sbjct: 70 NTVRNRSTRSLSTGEREQIAELAATKPKIDLEIQFDYNSADIAKTSVPSVQALGKALSDP 129 Query: 132 DLKGSTFVVAGHTDAAGGEDYNQGLSERRADAIKRYLVDKYGINGTDLVTVGYGKSKLKD 191 LKGSTFVVAGHTDA GGE+YNQGLSERRAD IK+YLV YG+NGTDLVTVGYGK+KLKD Sbjct: 130 ALKGSTFVVAGHTDAIGGEEYNQGLSERRADTIKKYLVQNYGLNGTDLVTVGYGKTKLKD 189 Query: 192 PSHPMAEVNRRVQVVNVENKATAAK 216 ++ +NRRVQVVN++ K TA+K Sbjct: 190 TANGADPINRRVQVVNMDTK-TASK 213 >ref|NP_950012.1| outer membrane protein OprF [Rhodopseudomonas palustris CGA009] emb|CAE30118.1| possible outer membrane protein OprF (AF117972) [Rhodopseudomonas palustris CGA009] Length = 216 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 127/204 (62%), Positives = 161/204 (78%), Gaps = 4/204 (1%) Query: 13 FMTVGAALSFGMAVACAGDVTDDQIIKALTPEKQPLTRGLSAGPQATSPELNADQAKFVQ 72 + +GAA F + VA AG+VT DQI++ALTP K PLTR LSA Q + ++ QAKFV Sbjct: 17 ILALGAA--FPLGVASAGEVTSDQIVRALTPNK-PLTRSLSAA-QPAAATVDPTQAKFVD 72 Query: 73 SVRGRATRSLSSAEREEIATIVQDKPKIDLEINFDYNSADISAKSLPSVQALGRALTNQD 132 S+R R TRSLSS ER +IA I +DKP IDLEI F+YNSA+IS ++ P+V+ALG+AL++ D Sbjct: 73 SLRNRPTRSLSSGERTQIAEITKDKPNIDLEITFEYNSANISRQAAPAVEALGKALSSPD 132 Query: 133 LKGSTFVVAGHTDAAGGEDYNQGLSERRADAIKRYLVDKYGINGTDLVTVGYGKSKLKDP 192 LKG TFVVAGHTD+ G + +NQ LSERRAD IKR LV+KYGI G DLVTVGYG+S+LKDP Sbjct: 133 LKGGTFVVAGHTDSVGSDSFNQDLSERRADTIKRVLVEKYGIAGADLVTVGYGESRLKDP 192 Query: 193 SHPMAEVNRRVQVVNVENKATAAK 216 +HP + +NRRVQVVN+ +++TAAK Sbjct: 193 AHPDSGINRRVQVVNMSDQSTAAK 216