BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0057.0010.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771856.1| hypothetical protein bll5216 [Bradyrhizobium ja...   180   6e-44
ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobi...   178   3e-43
ref|ZP_01045318.1| hypothetical protein NB311A_15302 [Nitrobacte...   166   1e-39
ref|YP_001239877.1| hypothetical protein BBta_3900 [Bradyrhizobi...   166   1e-39
ref|NP_774299.1| hypothetical protein bll7659 [Bradyrhizobium ja...   165   2e-39

>ref|NP_771856.1| hypothetical protein bll5216 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50481.1| bll5216 [Bradyrhizobium japonicum USDA 110]
          Length = 200

 Score =  180 bits (457), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 98/119 (82%), Gaps = 8/119 (6%)

Query: 1   MALDDNESDALIGSDKVEGTAVYGADGNKVGTIERLMIDKTSGKVSYAVLSFGGFLGIGD 60
           M ++D E+ +LIGSDKVEGT VYG DG KVG +ER+MIDK SGKVSYAVLSFGG LGIGD
Sbjct: 89  MTMEDRETFSLIGSDKVEGTNVYGVDGEKVGYVERVMIDKISGKVSYAVLSFGGLLGIGD 148

Query: 61  DHYPLPWQSLKYDTNLGGYVTGITESRLQGAPKYRDEASWNWNDPAAGRSVNDYYGVPI 119
           DHYPLPWQ+LKYDTNLGGYVTGIT+        Y DE+SWNW+DPA  RSVN YYGVP+
Sbjct: 149 DHYPLPWQALKYDTNLGGYVTGITQ--------YADESSWNWSDPATTRSVNAYYGVPV 199


>ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobium sp. ORS 278]
 emb|CAL77699.1| conserved hypothetical protein with Photosynthetic reaction centre
           domain (PCR-barrel) [Bradyrhizobium sp. ORS 278]
          Length = 126

 Score =  178 bits (451), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 100/117 (85%)

Query: 3   LDDNESDALIGSDKVEGTAVYGADGNKVGTIERLMIDKTSGKVSYAVLSFGGFLGIGDDH 62
           L+ +E   LIGSDKVEGTAVYGADG+++GTIER+MIDK SG+VSYAVL+FGGFLG+G+DH
Sbjct: 9   LEQSEYGNLIGSDKVEGTAVYGADGDRIGTIERVMIDKLSGRVSYAVLAFGGFLGLGNDH 68

Query: 63  YPLPWQSLKYDTNLGGYVTGITESRLQGAPKYRDEASWNWNDPAAGRSVNDYYGVPI 119
           YPLPW SLKYDT LGGYVT +T+ +L+GAPKY DE  W+W D A GR V+DYYGV +
Sbjct: 69  YPLPWPSLKYDTQLGGYVTAVTQDQLRGAPKYSDEREWDWGDLATGRKVDDYYGVQL 125


>ref|ZP_01045318.1| hypothetical protein NB311A_15302 [Nitrobacter sp. Nb-311A]
 gb|EAQ36646.1| hypothetical protein NB311A_15302 [Nitrobacter sp. Nb-311A]
          Length = 170

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 90/105 (85%)

Query: 1   MALDDNESDALIGSDKVEGTAVYGADGNKVGTIERLMIDKTSGKVSYAVLSFGGFLGIGD 60
           MA  +NE+  LIGSDKVEGTAV+G    K+G+IER+MI+KTSG+VSYAVLSFGGFLGIGD
Sbjct: 1   MATQENETRTLIGSDKVEGTAVFGPTDEKIGSIERVMIEKTSGRVSYAVLSFGGFLGIGD 60

Query: 61  DHYPLPWQSLKYDTNLGGYVTGITESRLQGAPKYRDEASWNWNDP 105
           DHYPLPW +LKYDT LGGY TGIT  +LQ APKY+ E++WNW++P
Sbjct: 61  DHYPLPWHTLKYDTRLGGYRTGITLDQLQKAPKYQTESNWNWSEP 105


>ref|YP_001239877.1| hypothetical protein BBta_3900 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35971.1| hypothetical protein BBta_3900 [Bradyrhizobium sp. BTAi1]
          Length = 125

 Score =  166 bits (419), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 98/117 (83%)

Query: 3   LDDNESDALIGSDKVEGTAVYGADGNKVGTIERLMIDKTSGKVSYAVLSFGGFLGIGDDH 62
           LD  E   LIGSDKVEGTAVYGAD +K+GTIER+MIDK SG+VSY VL+FGG LG+G+DH
Sbjct: 8   LDQREYGNLIGSDKVEGTAVYGADDSKIGTIERVMIDKLSGRVSYVVLAFGGLLGLGNDH 67

Query: 63  YPLPWQSLKYDTNLGGYVTGITESRLQGAPKYRDEASWNWNDPAAGRSVNDYYGVPI 119
           YPLPWQSLKYDT LGGYVTG+TE +L+GAPKY DE  W+W D A GR V+DYYG+ +
Sbjct: 68  YPLPWQSLKYDTRLGGYVTGVTEEQLRGAPKYSDEREWDWGDLATGRKVDDYYGIKL 124


>ref|NP_774299.1| hypothetical protein bll7659 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52924.1| bll7659 [Bradyrhizobium japonicum USDA 110]
          Length = 110

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/106 (74%), Positives = 90/106 (84%)

Query: 1   MALDDNESDALIGSDKVEGTAVYGADGNKVGTIERLMIDKTSGKVSYAVLSFGGFLGIGD 60
           MA++D E+ +LIGSD VEGT VYGADG KVG IER+MIDK SGKVS+AVLSF G L IGD
Sbjct: 1   MAMEDRETFSLIGSDNVEGTNVYGADGEKVGYIERVMIDKVSGKVSHAVLSFDGLLRIGD 60

Query: 61  DHYPLPWQSLKYDTNLGGYVTGITESRLQGAPKYRDEASWNWNDPA 106
            HYPLPWQ+LKYDTNL GYVTGIT+  L+ APKY DE+SWNW+DPA
Sbjct: 61  VHYPLPWQALKYDTNLCGYVTGITQDHLRSAPKYADESSWNWSDPA 106