BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0004.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767820.1| two-component response regulator [Bradyrhizobiu... 340 7e-92 ref|NP_774702.1| two-component response regulator [Bradyrhizobiu... 324 6e-87 ref|YP_001207352.1| two-component LuxR family response regulator... 227 6e-58 ref|YP_001241787.1| two component LuxR family transcriptional re... 226 2e-57 ref|ZP_06888912.1| two component transcriptional regulator, LuxR... 224 5e-57 >ref|NP_767820.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gb|AAF78807.1| two-component system transcriptional regulator ElmR [Bradyrhizobium japonicum] dbj|BAC46445.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 214 Score = 340 bits (872), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 163/203 (80%), Positives = 185/203 (91%) Query: 1 LIVDDHPVVVSGCRSLFASDKTVKIEEAADAKAGLRAFTQKRPDVTVIDIKLPDVSGFEL 60 LIVDDHPVV+SGCR+LFASD +++I+EA DAK+G RA+ KRPDVTVIDI LPDVSGFEL Sbjct: 12 LIVDDHPVVLSGCRTLFASDHSIRIDEAMDAKSGHRAYISKRPDVTVIDISLPDVSGFEL 71 Query: 61 LRRIRKDDPVARIIMFSMNDDPAFVVRAVEMGAQGYLSKSDDPRLFVKAVRKVAAGERFI 120 +RRIRKDDP A+IIMFSMNDDPAFVVRAVE+GAQGY+SK DDPR+ +KAVRKV AG+ FI Sbjct: 72 MRRIRKDDPDAKIIMFSMNDDPAFVVRAVELGAQGYVSKGDDPRILLKAVRKVVAGDNFI 131 Query: 121 SPHLAEAIAFAGAAIKASPASQMSARELEILRLLGRGDKIVEVASALGISYKTVANATSL 180 SP LAEA+ F+GAAIKA+PASQM+ RELEILRLLGRGDKIVEVA ALGISYKTVAN TSL Sbjct: 132 SPQLAEAVTFSGAAIKANPASQMTPRELEILRLLGRGDKIVEVAEALGISYKTVANTTSL 191 Query: 181 LKQKLGAKNHSDLVRIAVEMELG 203 LKQKLGAKNHSDL+RIAVE+ + Sbjct: 192 LKQKLGAKNHSDLIRIAVEIGMN 214 >ref|NP_774702.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC53327.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 206 Score = 324 bits (830), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 156/202 (77%), Positives = 181/202 (89%) Query: 1 LIVDDHPVVVSGCRSLFASDKTVKIEEAADAKAGLRAFTQKRPDVTVIDIKLPDVSGFEL 60 LIV+DHPVV+SGCR+LFASD +V+I+EAADAKAG RA+ K PDVTV+D++LPD++GFEL Sbjct: 4 LIVEDHPVVISGCRALFASDPSVEIDEAADAKAGHRAYLHKHPDVTVVDVRLPDLTGFEL 63 Query: 61 LRRIRKDDPVARIIMFSMNDDPAFVVRAVEMGAQGYLSKSDDPRLFVKAVRKVAAGERFI 120 RRIRKDDP ARI+M S++DDPAFV RAVEMG QGY+SKSDDPR+ KA+RKVAAGERF+ Sbjct: 64 TRRIRKDDPAARIVMLSVSDDPAFVARAVEMGIQGYVSKSDDPRILAKAIRKVAAGERFV 123 Query: 121 SPHLAEAIAFAGAAIKASPASQMSARELEILRLLGRGDKIVEVASALGISYKTVANATSL 180 SP LAEA FAGAAIKASP +QMSARELEILRLLGRGD+I EVA+ LGISYKTVAN TS Sbjct: 124 SPRLAEATTFAGAAIKASPLTQMSARELEILRLLGRGDRISEVAAELGISYKTVANITSA 183 Query: 181 LKQKLGAKNHSDLVRIAVEMEL 202 LK KLGAK+HSDLVRIAVE++L Sbjct: 184 LKTKLGAKSHSDLVRIAVEIDL 205 >ref|YP_001207352.1| two-component LuxR family response regulator [Bradyrhizobium sp. ORS 278] emb|CAL79135.1| putative two-component response regulator, with HTH luxR family [Bradyrhizobium sp. ORS 278] Length = 206 Score = 227 bits (579), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 107/199 (53%), Positives = 149/199 (74%) Query: 1 LIVDDHPVVVSGCRSLFASDKTVKIEEAADAKAGLRAFTQKRPDVTVIDIKLPDVSGFEL 60 LIVDDHP+V SGCR+L + D +++ EAADA++G +F +RPDV V+DI LP VSGFEL Sbjct: 4 LIVDDHPIVASGCRALLSGDADLELIEAADAESGEASFIARRPDVCVVDINLPTVSGFEL 63 Query: 61 LRRIRKDDPVARIIMFSMNDDPAFVVRAVEMGAQGYLSKSDDPRLFVKAVRKVAAGERFI 120 RRI D AR+IMFSMNDDP F RA+++GA+GY+SKS DP +A+R+V +G ++ Sbjct: 64 ARRILAHDANARLIMFSMNDDPVFAARAIDIGAKGYVSKSGDPNDLAEAIREVFSGGSYL 123 Query: 121 SPHLAEAIAFAGAAIKASPASQMSARELEILRLLGRGDKIVEVASALGISYKTVANATSL 180 P +A +IAFAGAA+ SP +++++RELEILRLL G + E+A + SYKTVAN +S+ Sbjct: 124 PPAIARSIAFAGAAVAQSPLAKLTSRELEILRLLSAGKSLTEIAWLIHSSYKTVANTSSI 183 Query: 181 LKQKLGAKNHSDLVRIAVE 199 ++QKLG + +LVR+A+E Sbjct: 184 IRQKLGVRTSGELVRLAIE 202 >ref|YP_001241787.1| two component LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ37881.1| two component transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 206 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 106/199 (53%), Positives = 149/199 (74%) Query: 1 LIVDDHPVVVSGCRSLFASDKTVKIEEAADAKAGLRAFTQKRPDVTVIDIKLPDVSGFEL 60 LIVDDHP+V SGCR+L ++D +++ EA+DA++G +F +RPDV+VIDI LP VSGFEL Sbjct: 4 LIVDDHPIVASGCRALLSTDPDLELLEASDAESGEASFVARRPDVSVIDINLPTVSGFEL 63 Query: 61 LRRIRKDDPVARIIMFSMNDDPAFVVRAVEMGAQGYLSKSDDPRLFVKAVRKVAAGERFI 120 RRI + AR+IMFSMNDDP F RA+++GA+GY+SKS DP +A+R+VA G ++ Sbjct: 64 ARRILAHEASARLIMFSMNDDPVFAARAIDIGAKGYVSKSGDPNDLAEAIREVARGGSYL 123 Query: 121 SPHLAEAIAFAGAAIKASPASQMSARELEILRLLGRGDKIVEVASALGISYKTVANATSL 180 P +A +IAFAGA + SP ++++ RELEILRLL G + E+A + SYKTVAN +S+ Sbjct: 124 PPAIARSIAFAGATVAQSPLAKLTPRELEILRLLSAGKSLSEIAWLIHSSYKTVANTSSI 183 Query: 181 LKQKLGAKNHSDLVRIAVE 199 ++QKLG + +LVR+A+E Sbjct: 184 IRQKLGVRTSGELVRLAIE 202 >ref|ZP_06888912.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gb|EFH02636.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 204 Score = 224 bits (572), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 111/202 (54%), Positives = 149/202 (73%), Gaps = 2/202 (0%) Query: 1 LIVDDHPVVVSGCRSLFASDKTVKIEEAADAKAGLRAFTQKRPDVTVIDIKLPDVSGFEL 60 LIVDDHP++VSGC ++ A++ ++ +A DA +GL AF RPDVTV+DI LP SGFEL Sbjct: 4 LIVDDHPIIVSGCAAILAAEGDIESRDAGDADSGLAAFLDWRPDVTVVDINLPGASGFEL 63 Query: 61 LRRIRKDDPVARIIMFSMNDDPAFVVRAVEMGAQGYLSKSDDPRLFVKAVRKVAAGERFI 120 RRI + D AR+++FSMNDDP F RA+E GA+GY++K+DDP L +KA+R+VAAG F+ Sbjct: 64 TRRILRHDAQARVVVFSMNDDPIFAARAIEAGARGYVAKNDDPFLLLKALREVAAGGLFL 123 Query: 121 SPHLAEAIAFAGAAIKASPASQMSARELEILRLLGRGDKIVEVASALGISYKTVANATSL 180 P +A +AF A P + +SARELEILR+LG+G + E+A A +SYKT+AN+ SL Sbjct: 124 MPRMANRLAFDKTL--ADPLAGLSARELEILRMLGKGLSLSEIAEAAHVSYKTIANSCSL 181 Query: 181 LKQKLGAKNHSDLVRIAVEMEL 202 LK+KLGA+ DLVRIA+E L Sbjct: 182 LKRKLGARTPMDLVRIAIEQRL 203