BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0003.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAF78808.1| putative two-component system sensor histidine ki... 248 5e-64 ref|NP_767819.1| two-component sensor histidine kinase [Bradyrhi... 248 6e-64 ref|YP_744175.1| two component system histidine kinase [Granulib... 117 1e-24 ref|NP_772824.1| two-component sensor histidine kinase [Bradyrhi... 113 4e-23 ref|ZP_01228286.1| putative methanol utilization control sensor ... 108 1e-21 >gb|AAF78808.1| putative two-component system sensor histidine kinase ElmS [Bradyrhizobium japonicum] Length = 470 Score = 248 bits (634), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 134/263 (50%), Positives = 169/263 (64%), Gaps = 4/263 (1%) Query: 1 MAAMVVGALLLGGLALQIVSPEQFENENAQAARSAERVANALNAALAVAGNPPQTLDAFA 60 + + AL++GG+ LQ + Q +EN SA VA ALN L + NP QTLDAF Sbjct: 15 LGVSFLAALVMGGVLLQSFATGQLADENELGRHSARAVAAALNNTLRASDNPRQTLDAFV 74 Query: 61 DKLGRSETIAFVP--PGTRPQRSAADRHHGNIPAWFTALLKVPELGSTHPIRIGVTHVGD 118 LG S I F P G P +A R ++P WF LL +P++ + P+ I VGD Sbjct: 75 HSLGTSSDIQFRPVEAGPEPSPTAGPRKPHSVPQWFIDLLTIPDMDAASPLIIDGKRVGD 134 Query: 119 IVFSPDLSPDIEEKWAGFVAIVSSSSALMLLAALSAYFTTGAALRPLAQLGAGLTRMRNG 178 +VF PDLS D+ EKW GF+A+ S + L +L AY +ALRPL LGAGLTR+R G Sbjct: 135 LVFLPDLSVDLFEKWIGFLALTSLIAVLTVLTGTIAYLFAESALRPLQNLGAGLTRIRRG 194 Query: 179 DYDAAIPLAGPPEIRKSCAEANQLAVTLRRLSQDNRNLLRKIVAVQDEERRELARELHDE 238 DY IP+AGPPEIR+SC EAN LA TL RLSQDNR+LL ++V++QD+ERR+LARELHDE Sbjct: 195 DYATPIPVAGPPEIRQSCEEANALAATLARLSQDNRDLLHRLVSLQDDERRDLARELHDE 254 Query: 239 MGPLLFAIRANATALSDXRGGGP 261 +GPLLF+IRA AL RG P Sbjct: 255 LGPLLFSIRAGTIAL--IRGSPP 275 >ref|NP_767819.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] dbj|BAC46444.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 446 Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 131/255 (51%), Positives = 166/255 (65%), Gaps = 2/255 (0%) Query: 1 MAAMVVGALLLGGLALQIVSPEQFENENAQAARSAERVANALNAALAVAGNPPQTLDAFA 60 + + AL++GG+ LQ + Q +EN SA VA ALN L + NP QTLDAF Sbjct: 15 LGVSFLAALVMGGVLLQSFATGQLADENELGRHSARAVAAALNNTLRASDNPRQTLDAFV 74 Query: 61 DKLGRSETIAFVP--PGTRPQRSAADRHHGNIPAWFTALLKVPELGSTHPIRIGVTHVGD 118 LG S I F P G P +A R ++P WF LL +P++ + P+ I VGD Sbjct: 75 HSLGTSSDIQFRPVEAGPEPSPTAGPRKPHSVPQWFIDLLTIPDMDAASPLIIDGKRVGD 134 Query: 119 IVFSPDLSPDIEEKWAGFVAIVSSSSALMLLAALSAYFTTGAALRPLAQLGAGLTRMRNG 178 +VF PDLS D+ EKW GF+A+ S + L +L AY +ALRPL LGAGLTR+R G Sbjct: 135 LVFLPDLSVDLFEKWIGFLALTSLIAVLTVLTGTIAYLFAESALRPLQNLGAGLTRIRRG 194 Query: 179 DYDAAIPLAGPPEIRKSCAEANQLAVTLRRLSQDNRNLLRKIVAVQDEERRELARELHDE 238 DY IP+AGPPEIR+SC EAN LA TL RLSQDNR+LL ++V++QD+ERR+LARELHDE Sbjct: 195 DYATPIPVAGPPEIRQSCEEANALAATLARLSQDNRDLLHRLVSLQDDERRDLARELHDE 254 Query: 239 MGPLLFAIRANATAL 253 +GPLLF+IRA AL Sbjct: 255 LGPLLFSIRAGTIAL 269 >ref|YP_744175.1| two component system histidine kinase [Granulibacter bethesdensis CGDNIH1] gb|ABI61252.1| two component system histidine kinase [Granulibacter bethesdensis CGDNIH1] Length = 444 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 107/201 (53%), Gaps = 6/201 (2%) Query: 65 RSETIAFVPPGTRPQRSAADRHHGNIPAWFTALLKVPELGSTHPIRIGVTHVGDIVFSPD 124 R +VP G P +A PAWF VP + P++I GDIV D Sbjct: 68 RHVIFIYVPSGATPPHAAPPLVESGAPAWFAGWFHVPRPVRSFPVQIEGVFRGDIVMVGD 127 Query: 125 LSPDIEEKWA--GFVAIVSSSSALMLLAALSAYFTTGAALRPLAQLGAGLTRMRNGDYDA 182 +I E W F+ + + +LM++AA+ ++T AL+P++ L GL RMR G +DA Sbjct: 128 PHNEIAEIWEELKFLLGLLACVSLMIMAAM--FWTARYALKPISTLAEGLQRMRAGQFDA 185 Query: 183 AIPLAGPPEIRKSCAEANQLAVTLRRLSQDNRNLLRKIVAVQDEERRELARELHDEMGPL 242 PL E++ NQLA TLR + DN LL ++V++Q+ ERRELARELHD+ G Sbjct: 186 LPPLY-VTELKPIGERFNQLAETLRAVRGDNERLLEQMVSLQETERRELARELHDDFGAT 244 Query: 243 LFAIRAN-ATALSDXRGGGPA 262 LF RA AT L + R G A Sbjct: 245 LFGARAELATLLLEARRQGDA 265 >ref|NP_772824.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] dbj|BAC51449.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 503 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 115/244 (47%), Gaps = 10/244 (4%) Query: 23 QFENENAQAARSAERVANALNAALAVAGNPPQTLDAFADKLGRSETIAFV------PPGT 76 + + E+ R A + A L A +P L+ A L R ++ P T Sbjct: 88 RVQAEDQSVIRLAREFIEMIVADLNEAPDPDARLNQIARDLSRLRHVSIALHDSGGNPLT 147 Query: 77 RPQRSAADRHHGNIPAWFTALLKVPELGSTHPIRI-GVTHVGDIVFSPDLSPDIEEKWAG 135 P+ A D G PAWF +L+ + + P+ I G I PD +I E W G Sbjct: 148 PPRPDADDDTRGP-PAWFVSLVHPEQTAVSVPVSIHGKPGSLRITSHPD--DEIAEIWDG 204 Query: 136 FVAIVSSSSALMLLAALSAYFTTGAALRPLAQLGAGLTRMRNGDYDAAIPLAGPPEIRKS 195 V + S + L L G AL PL L +T + G Y+A + G PE+ Sbjct: 205 IVTQLEVGSVIALALFLIMMTVVGRALAPLQSLAEAMTELEGGHYEARVAPGGAPELAAI 264 Query: 196 CAEANQLAVTLRRLSQDNRNLLRKIVAVQDEERRELARELHDEMGPLLFAIRANATALSD 255 C + N LA TL +D R L + V++QD ER+E+ARELHDE GP LF++RA+A+AL+ Sbjct: 265 CTKLNHLAATLGEAVEDKRRLAERAVSLQDVERKEIARELHDEFGPYLFSLRAHASALAK 324 Query: 256 XRGG 259 G Sbjct: 325 QADG 328 >ref|ZP_01228286.1| putative methanol utilization control sensor protein moxY [Aurantimonas manganoxydans SI85-9A1] gb|EAS49462.1| putative methanol utilization control sensor protein moxY [Aurantimonas manganoxydans SI85-9A1] Length = 454 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 88/167 (52%) Query: 87 HGNIPAWFTALLKVPELGSTHPIRIGVTHVGDIVFSPDLSPDIEEKWAGFVAIVSSSSAL 146 +G +P WF L P P+ + V S D ++ W ++ A Sbjct: 100 YGGLPEWFVDFLAPPPSTIIMPLSGSALPMTAAVVSIDPRNELASSWMDLATSLAILIAF 159 Query: 147 MLLAALSAYFTTGAALRPLAQLGAGLTRMRNGDYDAAIPLAGPPEIRKSCAEANQLAVTL 206 +L+A + + ALRPLA + A R+ GDYD A+ A PPE+R A N +A L Sbjct: 160 LLIAFAAIWIVADRALRPLADIQAAFARIGGGDYDIALAPADPPEMRALAAGCNDMARRL 219 Query: 207 RRLSQDNRNLLRKIVAVQDEERRELARELHDEMGPLLFAIRANATAL 253 +S NR L +++ +QDEER ELAR+LHDE+GPLLF I +A+A+ Sbjct: 220 DEISARNRRLSEQLLLLQDEERAELARDLHDEIGPLLFVIDVDASAI 266