BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0057.0001.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767818.1| hypothetical protein blr1178 [Bradyrhizobium ja...   107   5e-22
ref|ZP_07081358.1| CbbQ/NirQ/NorQ/GpvN family protein [Sphingoba...    51   7e-05
ref|YP_004346499.1| hypothetical protein Fluta_3693 [Fluviicola ...    49   2e-04
ref|ZP_07086505.1| CbbQ/NirQ/NorQ/GpvN family protein [Chryseoba...    47   0.001
ref|YP_954884.1| hypothetical protein Mvan_4101 [Mycobacterium v...    47   0.001

>ref|NP_767818.1| hypothetical protein blr1178 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46443.1| blr1178 [Bradyrhizobium japonicum USDA 110]
          Length = 121

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 67/110 (60%), Gaps = 1/110 (0%)

Query: 12  FDEMAAVVDWLDCCRSHDLEALLDLYADQARLECACEGS-RISGRSALADYWRPKLSTVA 70
           FD+M  VVDW+D CR  DL  LLDLYAD A++EC C G+ R  GR  L  YW P+LS  +
Sbjct: 4   FDQMGIVVDWVDACRKGDLATLLDLYADDAQIECTCNGTQRYRGRDELEVYWGPRLSAFS 63

Query: 71  ADAFGLEEITPQDDGVVLDYLSYEGKRVRIMFVFDALGKISHMRCAPSSR 120
           +  FGLEEI P  DGV L+Y      R+   F F A GKI    CAP+ +
Sbjct: 64  SAGFGLEEIHPVPDGVDLEYSVAGALRIHASFRFSAEGKIDSTLCAPARQ 113


>ref|ZP_07081358.1| CbbQ/NirQ/NorQ/GpvN family protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gb|EFK58293.1| CbbQ/NirQ/NorQ/GpvN family protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 115

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 20  DWLDCCRSHDLEALLDLYAD-------QARLECACEGSRISGRSALADYWRPKLSTVAAD 72
           +W+    +H+LE +L  Y+D         +L    +   + G+  +ADYW+  L+ +   
Sbjct: 9   EWIHSWNTHNLEDILSHYSDDIEITTPMIKLALGVDNGSLKGKDLVADYWQKALNKLPDL 68

Query: 73  AFGLEEITPQDDGVVLDYLSYEGKR-VRIMFVFDALGKISHM 113
            F L ++T   + V L Y S   K+ + +MF FD  GK++ M
Sbjct: 69  HFELYDVTVGVNSVALYYKSVMNKKAIEVMF-FDEYGKVNKM 109


>ref|YP_004346499.1| hypothetical protein Fluta_3693 [Fluviicola taffensis DSM 16823]
 gb|AEA45661.1| hypothetical protein Fluta_3693 [Fluviicola taffensis DSM 16823]
          Length = 140

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 20  DWLDCCRSHDLEALLDLYAD-------QARLECACEGSRISGRSALADYWRPKLSTVAAD 72
           +W++   SH+LE +L  Y++         +L    +   + G+  +A+YW+  L  + + 
Sbjct: 34  EWINSWNSHNLEEILSHYSEDIEITTPMIKLATGSDTDILKGKENVANYWKRALDKIPSL 93

Query: 73  AFGLEEITPQDDGVVLDYLSYEGKR-VRIMFVFDALGKISHM 113
            F L ++T   + + + Y S   K+ + +MF FD  GK++ M
Sbjct: 94  HFELYDVTYGVNSIAIYYKSVMNKKAIEVMF-FDQNGKVNKM 134


>ref|ZP_07086505.1| CbbQ/NirQ/NorQ/GpvN family protein [Chryseobacterium gleum ATCC
           35910]
 gb|EFK33297.1| CbbQ/NirQ/NorQ/GpvN family protein [Chryseobacterium gleum ATCC
           35910]
          Length = 114

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 21  WLDCCRSHDLEALLDLYADQARLEC-----ACEG--SRISGRSALADYWRPKLSTVAADA 73
           W++   SH+LE +L  YAD   +       A  G  S + G+ A+ +YWR  L       
Sbjct: 10  WVNVWNSHNLEDILSHYADDIEITTPMIAMATGGRESSLKGKEAVREYWRKALDKFPDLH 69

Query: 74  FGLEEITPQDDGVVLDYLSYEGKR-VRIMFVFDALGKISHM 113
           F L   T   D V L Y S   K  V +MF F+  GKIS M
Sbjct: 70  FDLIHSTAGVDSVALFYKSIMDKHAVEVMF-FNEDGKISRM 109


>ref|YP_954884.1| hypothetical protein Mvan_4101 [Mycobacterium vanbaalenii PYR-1]
 gb|ABM14878.1| protein of unknown function DUF1486 [Mycobacterium vanbaalenii
           PYR-1]
          Length = 122

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 11  HFDEMAAVVDWLDCCRSHDLEALLDLYADQ------ARLECACE-GSRISGRSALADYWR 63
           H D  A   DW+     HD++A+L+ + D+        L+ A + G  + G++AL +YW 
Sbjct: 2   HIDAAAFSADWVRAWNEHDVDAVLEHFDDEVVFTSPVALKVAPQTGGVVRGKAALREYWT 61

Query: 64  PKLSTVAADAFGLEEITPQDDGVVLDYLSYEGKRVRIMFVFDALGKI--SHMRCAPS 118
             L+ +    F +E +    D VV+ Y +  G  V  +  F+  G +   H   AP+
Sbjct: 62  AALAGIPDLRFTVERVYQGIDTVVIAYRNQNGGLVSEVLRFNDAGLVVEGHGTYAPA 118