BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0056.0027.p (400 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774626.1| hypothetical protein bll7986 [Bradyrhizobium ja... 658 0.0 ref|YP_001220437.1| putative secretion protein HlyD [Bradyrhizob... 654 0.0 ref|YP_004302760.1| Efflux transporter RND family, MFP subunit [... 332 1e-88 ref|YP_674837.1| RND family efflux transporter MFP subunit [Meso... 293 5e-77 ref|ZP_01015725.1| hypothetical protein 1099457000255_RB2654_078... 286 6e-75 >ref|NP_774626.1| hypothetical protein bll7986 [Bradyrhizobium japonicum USDA 110] dbj|BAC53251.1| bll7986 [Bradyrhizobium japonicum USDA 110] Length = 412 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/387 (87%), Positives = 361/387 (93%) Query: 12 WFAWPRPLPVDLATVVKGPIEVTADDDGKTHVRHVYTVSAPIAGKVLRISHPTGEHGPSL 71 WFAWPRP+ VDLATV KGPIEVTADDDGKT VRHVYTVSAPIAGKVLRISHP GE GPSL Sbjct: 24 WFAWPRPVLVDLATVAKGPIEVTADDDGKTRVRHVYTVSAPIAGKVLRISHPFGEQGPSL 83 Query: 72 HVGDEVVANQTVVALMQPTLPGFIDVRSRDQLQAEVLAADAAIQQQEAEVKRIEAALDFS 131 HVGDEVVANQTV+ALMQPTLPGFIDVRSRDQLQAEV AADAAIQQQEAEV+RI AALDFS Sbjct: 84 HVGDEVVANQTVIALMQPTLPGFIDVRSRDQLQAEVAAADAAIQQQEAEVQRIGAALDFS 143 Query: 132 KTEFQRAQTLLRTQSTSAQAFDKAKFEVATSEANLASAKAQVEMRRAVRTSLAVRLMDPA 191 +TEFQRAQTLLRTQSTSAQAFDKAKF+VAT+EA LASAKAQV+MRRAVRTSLA RLMDPA Sbjct: 144 RTEFQRAQTLLRTQSTSAQAFDKAKFDVATNEAALASAKAQVDMRRAVRTSLAARLMDPA 203 Query: 192 NATSSAEPTCCIRVLAPASGRVLAIIQDSEATVLPGTRLVDIGNPLDLEIVADLLSTDAV 251 NA S EPTCC+RVLAPASGRVL I+QDSEATVLPGT LVDIGNPLDLE+VADLLSTDAV Sbjct: 204 NAAPSGEPTCCVRVLAPASGRVLKIVQDSEATVLPGTPLVDIGNPLDLEVVADLLSTDAV 263 Query: 252 QIKVGAPVRIDGWGGQPIKGKVVRVDPAGFLKVSALGIEEQRVRVTIDFVDPPEVWSKLG 311 QIKVGAPVRIDGWGG PIKGKVVRVDPAGFLKVSALGIEEQRVRVTIDFVDPPEVWS+LG Sbjct: 264 QIKVGAPVRIDGWGGAPIKGKVVRVDPAGFLKVSALGIEEQRVRVTIDFVDPPEVWSQLG 323 Query: 312 HDYRVIVHVTTWSASEALTIPVSALFRNGDQWAVFANENGRARRIPVEIGHRNNRLAEVV 371 HDYRV+VHVTTWSA++ALTIPVSALFR GDQWAVFA+ENG AR PV+IGHRN +AEV+ Sbjct: 324 HDYRVVVHVTTWSATDALTIPVSALFRKGDQWAVFADENGHARLEPVQIGHRNRHVAEVI 383 Query: 372 SGISAGDRVVLHPSDRIADGSRIVQRE 398 SG++ GDRVV+HPSDRI G RI QRE Sbjct: 384 SGLAVGDRVVVHPSDRIVSGGRIGQRE 410 >ref|YP_001220437.1| putative secretion protein HlyD [Bradyrhizobium sp. BTAi1] gb|ABQ39765.1| Putative Secretion protein HlyD [Bradyrhizobium sp. BTAi1] Length = 409 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/387 (86%), Positives = 359/387 (92%), Gaps = 1/387 (0%) Query: 12 WFAWPRPLPVDLATVVKGPIEVTADDDGKTHVRHVYTVSAPIAGKVLRISHPTGEHGPSL 71 WFAWPRP+ DLAT+ KGPIEVTADDDGKT VRHVYTVSAPIAGKVLRISHP GE GPSL Sbjct: 24 WFAWPRPVLADLATIAKGPIEVTADDDGKTRVRHVYTVSAPIAGKVLRISHPLGEQGPSL 83 Query: 72 HVGDEVVANQTVVALMQPTLPGFIDVRSRDQLQAEVLAADAAIQQQEAEVKRIEAALDFS 131 HVGDEV ANQTV ALMQPTLPGFIDVRSRDQL+AEVLAADAAIQQQ+AEV+RIEAALDFS Sbjct: 84 HVGDEVAANQTV-ALMQPTLPGFIDVRSRDQLEAEVLAADAAIQQQQAEVQRIEAALDFS 142 Query: 132 KTEFQRAQTLLRTQSTSAQAFDKAKFEVATSEANLASAKAQVEMRRAVRTSLAVRLMDPA 191 +TEFQRAQTLLRTQSTSAQAFDKAKF+VA +EA LASAKAQV+MRRAVRTSLA RLMDPA Sbjct: 143 RTEFQRAQTLLRTQSTSAQAFDKAKFDVANNEAALASAKAQVDMRRAVRTSLAARLMDPA 202 Query: 192 NATSSAEPTCCIRVLAPASGRVLAIIQDSEATVLPGTRLVDIGNPLDLEIVADLLSTDAV 251 NA SAEP CC+RVLAPASGRVL IIQDSEATVLPGT LVDIGNPLDLEIVADLLSTDAV Sbjct: 203 NAAPSAEPACCVRVLAPASGRVLKIIQDSEATVLPGTPLVDIGNPLDLEIVADLLSTDAV 262 Query: 252 QIKVGAPVRIDGWGGQPIKGKVVRVDPAGFLKVSALGIEEQRVRVTIDFVDPPEVWSKLG 311 QIKVGAPVRIDGWGGQPI+GKVVRVDPAGFLKVSALGIEEQRVRVTIDF DPP+ WS LG Sbjct: 263 QIKVGAPVRIDGWGGQPIRGKVVRVDPAGFLKVSALGIEEQRVRVTIDFADPPDTWSSLG 322 Query: 312 HDYRVIVHVTTWSASEALTIPVSALFRNGDQWAVFANENGRARRIPVEIGHRNNRLAEVV 371 HDYRV+VHVTTWSA EA T+PVSALFR G+QWAVFA+ENGRA+ + V IGHRNN +AEV+ Sbjct: 323 HDYRVVVHVTTWSAPEARTVPVSALFRKGNQWAVFADENGRAQMVTVSIGHRNNGMAEVL 382 Query: 372 SGISAGDRVVLHPSDRIADGSRIVQRE 398 SG++AGDRVVLHPSDRI DG+R+ QR+ Sbjct: 383 SGLAAGDRVVLHPSDRIGDGTRVAQRD 409 >ref|YP_004302760.1| Efflux transporter RND family, MFP subunit [Polymorphum gilvum SL003B-26A1] gb|ADZ69460.1| Efflux transporter, RND family, MFP subunit [Polymorphum gilvum SL003B-26A1] Length = 405 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 173/393 (44%), Positives = 251/393 (63%), Gaps = 10/393 (2%) Query: 7 AAGLIWFAWPRPLPVDLATVVKGPIEVTADDDGKTHVRHVYTVSAPIAGKVLRISHPTGE 66 AAG+ + WPRP+PVDLA V +GP+ VT D++G+T +R +Y VSAP+AG++LRI Sbjct: 19 AAGVAYMMWPRPIPVDLAVVAEGPLRVTVDEEGRTRIRDIYEVSAPVAGRLLRIG----- 73 Query: 67 HGPSLHVGDEVVANQTVVALMQPTLPGFIDVRSRDQLQAEVLAADAAIQQQEAEVKRIEA 126 L GD+V A++T++A +QP PGF D+R+ +L+A V AA A + A V+R A Sbjct: 74 ----LRAGDDVEADRTLIAELQPIDPGFRDLRTEAELRAAVQAAIAGLDLARANVERSYA 129 Query: 127 ALDFSKTEFQRAQTLLRTQSTSAQAFDKAKFEVATSEANLASAKAQVEMRRAVRTSLAVR 186 L F++ + QRA+ L + S + ++A+ V T++A +A A+A EMR+ Sbjct: 130 QLAFAEADLQRAEQLAGRGTVSTRQLEEAQLAVRTAKAEVAQAEATAEMRKHELERSRSL 189 Query: 187 LMDPANATSSAEPTCCIRVLAPASGRVLAIIQDSEATVLPGTRLVDIGNPLDLEIVADLL 246 L+ P +A C+ V +P G+VL ++Q+SE V G LV+IG+P +LEIV DLL Sbjct: 190 LLSPVDAIGRRGDCPCVPVYSPVDGKVLRVLQESEVVVEAGATLVEIGDPRNLEIVIDLL 249 Query: 247 STDAVQIKVGAPVRIDGWGGQP-IKGKVVRVDPAGFLKVSALGIEEQRVRVTIDFVDPPE 305 S DAV+++ G V ++ WGGQ + G V R++P GF KVSALGIEEQRV V + DP E Sbjct: 250 SADAVKVEPGQRVILESWGGQSALNGVVTRIEPFGFTKVSALGIEEQRVNVRVALTDPSE 309 Query: 306 VWSKLGHDYRVIVHVTTWSASEALTIPVSALFRNGDQWAVFANENGRARRIPVEIGHRNN 365 +++L H +RV + W A L +P++ALFR QW VFA +GRAR VEIGH N Sbjct: 310 AYARLAHGFRVEAAIVQWEADRVLKLPLTALFRRDGQWTVFAVVDGRARERRVEIGHGNG 369 Query: 366 RLAEVVSGISAGDRVVLHPSDRIADGSRIVQRE 398 E++SG++AGD V++HPSDR+ DG +V+R+ Sbjct: 370 LEVEILSGLAAGDTVIVHPSDRVVDGIAVVERQ 402 >ref|YP_674837.1| RND family efflux transporter MFP subunit [Mesorhizobium sp. BNC1] gb|ABG63672.1| efflux transporter, RND family, MFP subunit [Chelativorans sp. BNC1] Length = 398 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 172/388 (44%), Positives = 228/388 (58%), Gaps = 14/388 (3%) Query: 12 WFAWPRPLPVDLATVVKGPIEVTADDDGKTHVRHVYTVSAPIAGKVLRISHPTGEHGPSL 71 W +P VD+A V +GP++VT ++G T VR VY VSAPIAG++ R L Sbjct: 24 WSLREQPALVDVAEVKQGPMKVTVREEGVTRVREVYAVSAPIAGQLSRTL---------L 74 Query: 72 HVGDEVVANQTVVALMQPTLPGFIDVRSRDQLQAEVLAADAAIQQQEAEVKRIEAALDFS 131 + GD V A +TVVA + P P ID R+ +L A AA + + E+E++R E AL + Sbjct: 75 NEGDRVKAGETVVAAIHPLAPPLIDRRTEAELLAARDAARSGVGIAESELQRAETALRLA 134 Query: 132 KTEFQRAQTLLRTQSTSAQAFDKAKFEVATSEANLASAKAQVEMRRAVRTSLAVRLMDPA 191 +TE RA L S A +A E +A + +AKA V RRA S RLM P Sbjct: 135 ETELGRALKLAVPGVISESALHRATNEFELQKAAVEAAKATVGFRRAELASAEARLMQPG 194 Query: 192 NATSSAEPTCCIRVLAPASGRVLAIIQDSEATVLPGTRLVDIGNPLDLEIVADLLSTDAV 251 +A A+ CC+ VLAP G VLA+ SE V G R+ DIGN DLEIVADLLS DAV Sbjct: 195 SAALDAK-GCCVDVLAPVDGVVLAVAAKSEQAVAAGARIADIGNTTDLEIVADLLSADAV 253 Query: 252 QIKVGAPVRIDGWGGQ-PIKGKVVRVDPAGFLKVSALGIEEQRVRVTIDFVDPPEVWSKL 310 +I G + WGG+ ++ + RVDPA F KVSALGIEEQRV +D E +L Sbjct: 254 RIGHGTKALVRDWGGERSLEATIRRVDPAAFTKVSALGIEEQRVNTVLDL---DEGDGRL 310 Query: 311 GHDYRVIVHVTTWSASEALTIPVSALFRNGDQWAVFANENGRARRIPVEIGHRNNRLAEV 370 GH YRV V + W ++ L +P+SALFRNG W VF R ++ VEIGH N+ +A++ Sbjct: 311 GHGYRVFVELAIWECADCLQVPISALFRNGSDWNVFLLTGDRVKQTAVEIGHMNDEVAQI 370 Query: 371 VSGISAGDRVVLHPSDRIADGSRIVQRE 398 + G+++GD VVLHP+D +AD SR +RE Sbjct: 371 LGGVTSGDIVVLHPADTLADNSRAERRE 398 >ref|ZP_01015725.1| hypothetical protein 1099457000255_RB2654_07895 [Maritimibacter alkaliphilus HTCC2654] gb|EAQ10608.1| hypothetical protein RB2654_07895 [Rhodobacterales bacterium HTCC2654] Length = 402 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 168/383 (43%), Positives = 233/383 (60%), Gaps = 11/383 (2%) Query: 16 PRPLPVDLATVVKGPIEVTADDDGKTHVRHVYTVSAPIAGKVLRISHPTGEHGPSLHVGD 75 P +PVD+A V GP+EVT + DG T VR V+ V+AP++G V R + VGD Sbjct: 26 PEIVPVDMAEVTAGPMEVTVNADGTTRVRDVFEVAAPVSGTVGR---------SPVKVGD 76 Query: 76 EVVANQTVVALMQPTLPGFIDVRSRDQLQAEVLAADAAIQQQEAEVKRIEAALDFSKTEF 135 V+ +TV+A ++P P F+D R+R Q +A V A+AA+ + ++ EA L+ ++ + Sbjct: 77 TVIKGETVIARIEPGEPAFLDERARKQAEAAVAQAEAALALAKTQITVAEADLNNAQRQL 136 Query: 136 QRAQTLLRTQSTSAQAFDKAKFEVATSEANLASAKAQVEMRRAVRTSLAVRLMDPANATS 195 RA L +TS A + A+ V + A L SA A +MR + + L P T Sbjct: 137 NRAFDLHERGTTSDAALETAETAVDIASAQLDSAHATADMRMSEVAAARAVLTQPGERTL 196 Query: 196 SAEPTCCIRVLAPASGRVLAIIQDSEATVLPGTRLVDIGNPLDLEIVADLLSTDAVQIKV 255 E CC+ + AP SG+VL++ S V GT L+ IG DLEIV +LLSTDAV++ Sbjct: 197 DEEEACCVDIRAPVSGKVLSVTSTSARPVTAGTTLLTIGPTDDLEIVVELLSTDAVRLAA 256 Query: 256 GAPVRIDGWGGQPIKGKVVR-VDPAGFLKVSALGIEEQRVRVTIDFVDPPEVWSKLGHDY 314 GAP I+ WGG VVR ++PA F KVSALGIEEQRVRV +DF D +V LGH++ Sbjct: 257 GAPAHIERWGGDTALDAVVREIEPAAFTKVSALGIEEQRVRVVLDFADGVDV-PPLGHNF 315 Query: 315 RVIVHVTTWSASEALTIPVSALFRNGDQWAVFANENGRARRIPVEIGHRNNRLAEVVSGI 374 RV + WSA +AL +P+SALFR+G WAVF +G AR P++IG RN+ AEV+SG+ Sbjct: 316 RVYARIVEWSAEDALRLPISALFRDGADWAVFVVRDGTARLTPIDIGQRNSDEAEVLSGL 375 Query: 375 SAGDRVVLHPSDRIADGSRIVQR 397 AGD+V+ HPSDR+A G+ + R Sbjct: 376 EAGDKVITHPSDRVAQGTLVEAR 398