BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0020.p         (161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774630.1| hypothetical protein bll7990 [Bradyrhizobium ja...   283   7e-75
ref|YP_004534965.1| hypothetical protein PP1Y_AT23279 [Novosphin...   127   6e-28
ref|YP_002514580.1| hypothetical protein Tgr7_2516 [Thioalkalivi...   114   7e-24
ref|YP_315081.1| hypothetical protein Tbd_1323 [Thiobacillus den...   109   2e-22
ref|YP_676404.1| hypothetical protein Meso_3872 [Mesorhizobium s...   108   2e-22

>ref|NP_774630.1| hypothetical protein bll7990 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53255.1| bll7990 [Bradyrhizobium japonicum USDA 110]
          Length = 157

 Score =  283 bits (723), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 139/157 (88%), Positives = 146/157 (92%)

Query: 5   MVSRRAIAALVGSLWLASNLTQVATAAETGLSKTAGGVTVYLGIVPAEIVKGLPSGSTTE 64
           MVSRRA+ AL+G LWLA  L  +ATAA+T LSKTAGGVTVYLGIVPAEIVKGLPSGSTTE
Sbjct: 1   MVSRRAVGALLGGLWLAGCLIGIATAADTDLSKTAGGVTVYLGIVPAEIVKGLPSGSTTE 60

Query: 65  RPMHGGAPKGPHEYHVVAAVFDAASGARVSDAVVTAEVSGFGLSGAKKKLEPMQISGTTT 124
           RPMHG  PKGPHEYHVVAAVFDAASGAR+SDAVVTAEVSG GLSGAKKKLEPMQISGTTT
Sbjct: 61  RPMHGRTPKGPHEYHVVAAVFDAASGARISDAVVTAEVSGLGLSGAKKKLEPMQISGTTT 120

Query: 125 YGGFFDLPGFDLYTVNLTVERSGASPAALQFRYDHRR 161
           YGGFFDLPGFDLYTV LTVER+GASPAALQF+YDHRR
Sbjct: 121 YGGFFDLPGFDLYTVKLTVERTGASPAALQFKYDHRR 157


>ref|YP_004534965.1| hypothetical protein PP1Y_AT23279 [Novosphingobium sp. PP1Y]
 emb|CCA93147.1| conserved hypothetical protein [Novosphingobium sp. PP1Y]
          Length = 152

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/132 (48%), Positives = 88/132 (66%), Gaps = 1/132 (0%)

Query: 30  AAETGLSKTAGGVTVYLGIVPAEIVKGLPSGSTTERPMHGGAPKGPHEYHVVAAVFDAAS 89
           AA  G +KT G V +YLGI+PAEIV+GL S   TER MHGG PKG  EYHV  A+FDA +
Sbjct: 21  AANAGYTKTVGNVLIYLGIIPAEIVRGLHSSGHTERTMHGGTPKGSDEYHVTIALFDAKT 80

Query: 90  GARVSDAVVTAEVSGFGLSGAKKKLEPMQISGTTTYGGFFDLPGFDLYTVNLTVERSGAS 149
           G R+S A V A V+  G+ G +K+L+PM+I+GT T+G +F + G   + + +T+   G S
Sbjct: 81  GERISRADVRARVAEIGMYGEEKELQPMEIAGTETFGNYFPMQGDGPFRIYVTIRLPGRS 140

Query: 150 PA-ALQFRYDHR 160
            A + +F + HR
Sbjct: 141 EAISTRFEHWHR 152


>ref|YP_002514580.1| hypothetical protein Tgr7_2516 [Thioalkalivibrio sulfidophilus
           HL-EbGr7]
 gb|ACL73593.1| conserved hypothetical protein [Thioalkalivibrio sulfidophilus
           HL-EbGr7]
          Length = 158

 Score =  114 bits (284), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 4/157 (2%)

Query: 5   MVSRRAIAALVG-SLWLASNLTQVATAAETGLSKTAGGVTVYLGIVPAEIVKGLPSGSTT 63
           M  R   ++++  SLW+A      ATA + G  + A G  VYLG++PA +V+G       
Sbjct: 1   MNIRHIFSSMIAVSLWVALLGFHTATA-DPGYRQVANGTVVYLGVLPAAMVRGH-HEDHP 58

Query: 64  ERPMHGGAPKGPHEYHVVAAVFDAASGARVSDAVVTAEVSGFGLSGAKKKLEPMQISGTT 123
           E  MH G P+G H +HV+AAVFDA SG ++ DA V A V+  GL+G  + LE M+I  T 
Sbjct: 59  EAVMHNGIPRGRHVFHVMAAVFDAESGDQIKDAQVEARVAALGLAGVSRPLESMRIDDTI 118

Query: 124 TYGGFFDLPGFDLYTVNLTVERSGA-SPAALQFRYDH 159
           TYG +F L G   Y + +T+ R GA +PA ++F Y H
Sbjct: 119 TYGNYFTLRGEGPYDIQITIARPGADTPAIVRFTYVH 155


>ref|YP_315081.1| hypothetical protein Tbd_1323 [Thiobacillus denitrificans ATCC
           25259]
 gb|AAZ97276.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 160

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 83/145 (57%), Gaps = 5/145 (3%)

Query: 19  WLASNLT--QVATAAETGLS-KTAGGVTVYLGIVPAEIVKGLPSGSTTERPMHGGAPKGP 75
           W A  L    V+ AAE     +   GV +YLG+VPA+I++G P     ER MHGG P   
Sbjct: 14  WAAIGLLSLNVSFAAEAPRDFQIVDGVAIYLGVVPAQIIQGHPK-EHEERRMHGGVPASR 72

Query: 76  HEYHVVAAVFDAASGARVSDAVVTAEVSGFGLSGAKKKLEPMQISGTTTYGGFFDLPGFD 135
           + +H++ A FDAASG R+ DA VTA V+  GL+  +K LEPM+I  T +YG +FD+    
Sbjct: 73  YRHHLMVAPFDAASGRRIEDAQVTAAVTELGLASKRKTLEPMRIDDTVSYGNYFDIRSNG 132

Query: 136 LYTVNLTVERSG-ASPAALQFRYDH 159
            Y + + + R G A P    F + H
Sbjct: 133 TYRIEVEIRRPGHAGPIKATFNHRH 157


>ref|YP_676404.1| hypothetical protein Meso_3872 [Mesorhizobium sp. BNC1]
 gb|ABG65239.1| conserved hypothetical protein [Chelativorans sp. BNC1]
          Length = 162

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 92/154 (59%), Gaps = 8/154 (5%)

Query: 9   RAIAALVGSLWLASNLTQVATAAETGLSKTAGGVTVYLGIVPAEIVKGLPSGSTTERPMH 68
           R ++A +G+L +++ L     +A+ G  ++A G++VYLGI+PA +V+G PS    E  MH
Sbjct: 15  RTLSATLGALLVSAGLA----SADDGY-QSADGLSVYLGIMPASVVRGHPS-DHAEGAMH 68

Query: 69  GGAPKGPHEYHVVAAVFDAASGARVSDAVVTAEVSGFG-LSGAKKKLEPMQISGTTTYGG 127
           GGAP G H  H+V AVFD  +  R+ +A + A VS  G +S  +  LEPM I+GT TYGG
Sbjct: 69  GGAPSGRHPQHIVVAVFDTRTSDRIENAEIVATVSSLGHVSHERIDLEPMSIAGTITYGG 128

Query: 128 FFDLPGFDLYTVNLTVERSGAS-PAALQFRYDHR 160
           F + PG   Y + L++       P  L F  DH+
Sbjct: 129 FVNFPGRSRYEIELSISIPDRDRPTHLTFSSDHQ 162