BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0018.p         (85 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774632.1| hypothetical protein bsl7992 [Bradyrhizobium ja...    89   2e-16
ref|YP_001220432.1| hypothetical protein BBta_p0073 [Bradyrhizob...    87   1e-15
ref|YP_158230.1| hypothetical protein ebB64 [Aromatoleum aromati...    77   8e-13
ref|ZP_06844038.1| conserved hypothetical protein [Burkholderia ...    70   1e-10
ref|YP_001109938.1| hypothetical protein Bcep1808_7279 [Burkhold...    68   4e-10

>ref|NP_774632.1| hypothetical protein bsl7992 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53257.1| bsl7992 [Bradyrhizobium japonicum USDA 110]
          Length = 86

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 72/84 (85%)

Query: 1  MSAQDHLGHQAQARQGMSVKSRAGLVLVGFLIIAGALLFTEHRAHVLGLLIWLPLLACPL 60
          MS QDH G++ + R+G+SVK++AGLVLVGFL+IAGALLFTEHRAHVLGLLIWLPLLACPL
Sbjct: 3  MSLQDHSGYRERPREGLSVKAKAGLVLVGFLVIAGALLFTEHRAHVLGLLIWLPLLACPL 62

Query: 61 MHMFMHGGHGHHGSHDQRNDHRGT 84
          MH+FMHGGHGHH    + ND R  
Sbjct: 63 MHLFMHGGHGHHHGGGRPNDPRSA 86


>ref|YP_001220432.1| hypothetical protein BBta_p0073 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39760.1| putative membrane protein of unknown function [Bradyrhizobium sp.
          BTAi1]
          Length = 85

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 58/65 (89%)

Query: 1  MSAQDHLGHQAQARQGMSVKSRAGLVLVGFLIIAGALLFTEHRAHVLGLLIWLPLLACPL 60
          MS QDH  H  + +QGMS KS+AGLVL+GFLIIAGALLFTEHRAHVLGLLIWLPLLACPL
Sbjct: 1  MSVQDHPAHLERPQQGMSTKSKAGLVLIGFLIIAGALLFTEHRAHVLGLLIWLPLLACPL 60

Query: 61 MHMFM 65
          MH+FM
Sbjct: 61 MHLFM 65


>ref|YP_158230.1| hypothetical protein ebB64 [Aromatoleum aromaticum EbN1]
 emb|CAI07329.1| hypothetical protein ebB64 [Aromatoleum aromaticum EbN1]
          Length = 81

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 43/59 (72%), Gaps = 4/59 (6%)

Query: 13 ARQGMSVKSRAGLVLVGFLIIAGALLFTEHRAHVLGLLIWLPLLACPLMHMFMHGGHGH 71
          AR G    SRA  V  GFL +A  LLFTEHRAHVLG L WL LLACPLMH+FMHGGH H
Sbjct: 15 ARSG----SRAKWVFAGFLALAVFLLFTEHRAHVLGFLPWLILLACPLMHLFMHGGHDH 69


>ref|ZP_06844038.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gb|EFG68379.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 89

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 44/69 (63%)

Query: 12 QARQGMSVKSRAGLVLVGFLIIAGALLFTEHRAHVLGLLIWLPLLACPLMHMFMHGGHGH 71
          + + G    SRA LVL+ FL I G  L TEHRAH+ G   +L +LACPLMH+FMH GHG 
Sbjct: 7  ERKPGGFFVSRANLVLIAFLAIGGFYLVTEHRAHLFGWWPFLFVLACPLMHLFMHHGHGG 66

Query: 72 HGSHDQRND 80
          H   D  +D
Sbjct: 67 HDDSDNASD 75


>ref|YP_001109938.1| hypothetical protein Bcep1808_7279 [Burkholderia vietnamiensis
          G4]
 gb|ABO60157.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
          Length = 89

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 44/67 (65%)

Query: 14 RQGMSVKSRAGLVLVGFLIIAGALLFTEHRAHVLGLLIWLPLLACPLMHMFMHGGHGHHG 73
          + G    SRA LVL+GFL I G  L TEHRAH+ G   +L +LACPLMH+FMH GHG H 
Sbjct: 9  KPGGFFVSRANLVLIGFLAIGGFYLVTEHRAHLYGWWPFLFILACPLMHLFMHHGHGGHD 68

Query: 74 SHDQRND 80
            +  +D
Sbjct: 69 DSEHGSD 75