BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0014.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08073901.1| hypothetical protein Met49242DRAFT_3289 [Meth...   110   9e-23
ref|YP_001409350.1| hypothetical protein Xaut_4907 [Xanthobacter...   110   9e-23
ref|YP_004534990.1| hypothetical protein PP1Y_AT23655 [Novosphin...   106   2e-21
ref|YP_002553630.1| hypothetical protein Dtpsy_2190 [Acidovorax ...   103   1e-20
ref|YP_001419464.1| hypothetical protein Xaut_4586 [Xanthobacter...   101   4e-20

>ref|ZP_08073901.1| hypothetical protein Met49242DRAFT_3289 [Methylocystis sp. ATCC
           49242]
 gb|EFX98418.1| hypothetical protein Met49242DRAFT_3289 [Methylocystis sp. ATCC
           49242]
          Length = 597

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 55/65 (84%)

Query: 40  DVLAYQQDLWERVILFWHTLRQRADNMITHERAGKPPLLDFDYEVILDARRFDRPVHYAL 99
           D + YQ D WER IL+W TLRQRADNMI HERAGKPPLLDFDYE++LDARRFDRPV YAL
Sbjct: 50  DAVHYQIDFWERSILYWDTLRQRADNMIAHERAGKPPLLDFDYEMLLDARRFDRPVSYAL 109

Query: 100 LRCRR 104
           LR  R
Sbjct: 110 LRITR 114


>ref|YP_001409350.1| hypothetical protein Xaut_4907 [Xanthobacter autotrophicus Py2]
 gb|ABS70114.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 632

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 70/109 (64%), Gaps = 6/109 (5%)

Query: 3   SLVNPRAKSGEL-----VAGAAPTTAIGVWAGGWSSDVLALD-DVLAYQQDLWERVILFW 56
           +L  P A +  L         AP       AG + SD      DVL+Y +D  ER ILFW
Sbjct: 6   TLAEPMAGTAALGQSGPTGTGAPQQTRNAQAGAFFSDPGTFARDVLSYGRDAAERWILFW 65

Query: 57  HTLRQRADNMITHERAGKPPLLDFDYEVILDARRFDRPVHYALLRCRRV 105
            TLRQRADNM+ HERAGKPPLLDFDYEV+LDARRF+RP +YALLR  RV
Sbjct: 66  DTLRQRADNMLAHERAGKPPLLDFDYEVLLDARRFERPANYALLRVTRV 114


>ref|YP_004534990.1| hypothetical protein PP1Y_AT23655 [Novosphingobium sp. PP1Y]
 emb|CCA93172.1| conserved hypothetical protein [Novosphingobium sp. PP1Y]
          Length = 599

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 58/75 (77%)

Query: 34  DVLALDDVLAYQQDLWERVILFWHTLRQRADNMITHERAGKPPLLDFDYEVILDARRFDR 93
           D+  LD+ +AYQ+D  ER ILFW TLRQRA+NM+ HERAG PPLLDF YE +LDARRF+R
Sbjct: 46  DLPTLDEFVAYQRDFMERTILFWDTLRQRANNMLEHERAGLPPLLDFQYETLLDARRFER 105

Query: 94  PVHYALLRCRRVRTD 108
           P +YALLR   +  D
Sbjct: 106 PTNYALLRITEIGGD 120


>ref|YP_002553630.1| hypothetical protein Dtpsy_2190 [Acidovorax ebreus TPSY]
 gb|ACM33630.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
          Length = 635

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 65/95 (68%), Gaps = 3/95 (3%)

Query: 11  SGELVAGAAPTTAIGVWAGGWSSDVLALDDVLAYQQDLWERVILFWHTLRQRADNMITHE 70
           S EL   AA  T+ G+     ++D L+  D   YQ+D +ER I FW TLRQRA+NM+ HE
Sbjct: 43  SEELTKPAAQETSSGMKG---ATDALSAQDFFDYQRDFFERSIAFWDTLRQRANNMLEHE 99

Query: 71  RAGKPPLLDFDYEVILDARRFDRPVHYALLRCRRV 105
           RAG PPLLDF YE +LDAR F+RPV+YALLR   +
Sbjct: 100 RAGLPPLLDFKYETLLDARIFERPVNYALLRITEI 134


>ref|YP_001419464.1| hypothetical protein Xaut_4586 [Xanthobacter autotrophicus Py2]
 gb|ABS69807.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 632

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 55/66 (83%)

Query: 40  DVLAYQQDLWERVILFWHTLRQRADNMITHERAGKPPLLDFDYEVILDARRFDRPVHYAL 99
           D L+Y +D+ ER ILFW TLRQRADNM+ HERAGKP LLDFDYEV+LDARR +RP +YAL
Sbjct: 49  DFLSYGRDVAERWILFWDTLRQRADNMLAHERAGKPALLDFDYEVLLDARRLERPANYAL 108

Query: 100 LRCRRV 105
           LR  RV
Sbjct: 109 LRVTRV 114