BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0013.p         (227 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774633.1| hypothetical protein bll7993 [Bradyrhizobium ja...   173   2e-41
ref|YP_001239424.1| hypothetical protein BBta_3424 [Bradyrhizobi...   150   2e-34
ref|YP_003067032.1| hypothetical protein METDI1438 [Methylobacte...   104   9e-21
ref|YP_002962967.1| hypothetical protein MexAM1_META1p1849 [meth...    95   6e-18
ref|YP_001409332.1| hypothetical protein Xaut_4888 [Xanthobacter...    92   4e-17

>ref|NP_774633.1| hypothetical protein bll7993 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53258.1| bll7993 [Bradyrhizobium japonicum USDA 110]
          Length = 241

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/188 (60%), Positives = 126/188 (67%), Gaps = 16/188 (8%)

Query: 15  VSTSSRAQSSADHEAHHPDQKSPPAATQPQSP-------PGQPGMMGQGMMGGRGMMDGN 67
           +S  S AQS A+H+ HHPDQK  PAA  P +P       P Q    G  M    G M  +
Sbjct: 38  LSNPSFAQSPAEHQGHHPDQKEAPAAKAPAAPEPPRGTGPSQGMTSGGMMNMMGGNMPMS 97

Query: 68  MANMMRMMGRQGAEAGCPGMSGMATIDRVEGRIAFLRTELKITDAQTGAWNSFADALRAN 127
               M  M RQ  +       GM TIDRVEGRIAFLRTELKITDAQ  AWN+FADALRAN
Sbjct: 98  DMMRMMGMMRQSGD-------GMETIDRVEGRIAFLRTELKITDAQAPAWNAFADALRAN 150

Query: 128 AKSLAEVRASMMPLQGTAPQGLVDRLTLQEKWLAARLEGTRAIRSALTNLAGTLSDEQKK 187
           AK+L E+R SMM   GT P  LVDRLT QEKWL+ARLE TRA++SALTNL G+ SDEQKK
Sbjct: 151 AKALGELRTSMMSQAGTEP--LVDRLTWQEKWLSARLEATRAMKSALTNLVGSFSDEQKK 208

Query: 188 TADELLAP 195
           TADELLAP
Sbjct: 209 TADELLAP 216


>ref|YP_001239424.1| hypothetical protein BBta_3424 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35518.1| hypothetical protein BBta_3424 [Bradyrhizobium sp. BTAi1]
          Length = 138

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 97/134 (72%), Gaps = 4/134 (2%)

Query: 86  GMSGMATIDRVEGRIAFLRTELKITDAQTGAWNSFADALRANAKSLAEVRASMMPLQGTA 145
           GM G+  +D VEGRIAFLR ELKITDAQT AW+ FADALRA AK L E+R++MM    T 
Sbjct: 8   GMDGLEMLDHVEGRIAFLRAELKITDAQTSAWSGFADALRARAKMLGELRSTMMG--NTG 65

Query: 146 PQGLVDRLTLQEKWLAARLEGTRAIRSALTNLAGTLSDEQKKTADELLAPHMGMMSMMAG 205
            + L+DRLT QEKWL+ARL+ TR++R+ L NL  T SDEQK  ADELLAP++G+M M   
Sbjct: 66  SETLLDRLTAQEKWLSARLDATRSLRTTLGNLVATFSDEQKTAADELLAPNLGIMPM--A 123

Query: 206 MQPGQMGPGQMQPG 219
            Q  +M   +MQ G
Sbjct: 124 KQGSRMSSMRMQRG 137


>ref|YP_003067032.1| hypothetical protein METDI1438 [Methylobacterium extorquens DM4]
 emb|CAX23044.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 203

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 78/134 (58%), Gaps = 10/134 (7%)

Query: 70  NMMRMMGRQGAEAGCPGMS--GMATIDRVEGRIAFLRTELKITDAQTGAWNSFADALRAN 127
           NM RM   Q      PGMS  G+   DR++GRIAFL+ EL+I+DAQ+ AWN FADALR++
Sbjct: 77  NMRRMQQNQA----MPGMSANGVDMTDRIDGRIAFLKAELRISDAQSAAWNRFADALRSS 132

Query: 128 AKSLAEVRASMM-PLQGTAPQGLVDRLTLQEKWLAARLEGTRAIRSALTNLAGTLSDEQK 186
            + L E R  +  P    AP   +DR    E+ L  RLE  R+ RS+ T L G L + QK
Sbjct: 133 RQHLLEARQQLASPGNSGAPGERLDRY---ERHLTERLEAIRSARSSFTQLYGALDEHQK 189

Query: 187 KTADELLAPHMGMM 200
             ADEL+ P +   
Sbjct: 190 HVADELVVPFLATF 203


>ref|YP_002962967.1| hypothetical protein MexAM1_META1p1849 [methylobacterium extorquens
           AM1]
 gb|ACS39690.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 245

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 6/130 (4%)

Query: 68  MANMMRMMGRQGAEAGCPGMSGMATIDRVEGRIAFLRTELKITDAQTGAWNSFADALRAN 127
           M+  MRM G     A  PGM  M   DR+EGR+AFLR EL+ITDAQ   W +FADA+R++
Sbjct: 119 MSEGMRMRGGMPGMAMGPGMVDMT--DRIEGRLAFLRAELRITDAQNSGWTTFADAVRSS 176

Query: 128 AKSLAEVRASMMPLQGTAPQGLVDRLTLQEKWLAARLEGTRAIRSALTNLAGTLSDEQKK 187
            + L   R     L         +RL   E+ L  RLE  +  R+A   L  TL D QK+
Sbjct: 177 RQHLIAARQ----LLNQQYSSSAERLDQYERHLTERLEALKNARAAFGRLYATLDDTQKR 232

Query: 188 TADELLAPHM 197
           TADEL+ P +
Sbjct: 233 TADELVVPFI 242


>ref|YP_001409332.1| hypothetical protein Xaut_4888 [Xanthobacter autotrophicus Py2]
 gb|ABS70096.1| protein of unknown function DUF1520 [Xanthobacter autotrophicus
           Py2]
          Length = 106

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 96  VEGRIAFLRTELKITDAQTGAWNSFADALRANAKSLAEVRASMMPLQGTAPQGLVDRLTL 155
           +EGR+AFL+TELKITD Q   WN FADA+RANAK++  +R  MM  +G A   L  RL  
Sbjct: 5   IEGRLAFLKTELKITDVQESKWNVFADAVRANAKAMRGMREGMMQARGGA---LPVRLER 61

Query: 156 QEKWLAARLEGTRAIRSALTNLAGTLSDEQKKTADELLAPHMGMM 200
            EK +A   E  R I++A+  L  + SDEQK+ AD+L+   MG+ 
Sbjct: 62  IEKAMALCQESLRTIKAAVEPLYASFSDEQKRAADQLMVSPMGLF 106