BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0056.0012.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001220477.1| hypothetical protein BBta_p0130 [Bradyrhizob... 389 e-106 ref|YP_003262857.1| hypothetical protein Hneap_0972 [Halothiobac... 339 3e-91 ref|YP_412105.1| hypothetical protein Nmul_A1410 [Nitrosospira m... 335 5e-90 ref|YP_001413138.1| hypothetical protein Plav_1864 [Parvibaculum... 333 1e-89 ref|ZP_08485182.1| protein of unknown function DUF344 [Methylomi... 332 4e-89 >ref|YP_001220477.1| hypothetical protein BBta_p0130 [Bradyrhizobium sp. BTAi1] gb|ABQ39805.1| hypothetical protein BBta_p0130 [Bradyrhizobium sp. BTAi1] Length = 263 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/264 (71%), Positives = 213/264 (80%), Gaps = 1/264 (0%) Query: 1 MPKSSRTRTAHHESGKAYRAALHDLQVELVKVQRHIIEHGHRVLIIFEGRDAAGKDGTIK 60 M KS +TR + Y +AL DLQ+ELVKVQ+H+I+H H+VL+IFEGRDAAGKDGTIK Sbjct: 1 MAKSIKTRRKQ-DGHTRYESALRDLQIELVKVQKHVIKHDHKVLVIFEGRDAAGKDGTIK 59 Query: 61 RIVQHLSPRETRVVALGKPSDHDRASWYFQRYVPYLPAAQEMILFNRSWYNRAGVEHVMG 120 RIV+HLSPRETRVVALGKPSD D SWYFQRY +LPAAQE+ILFNRSWYNRAGVE VM Sbjct: 60 RIVEHLSPRETRVVALGKPSDRDTTSWYFQRYATHLPAAQELILFNRSWYNRAGVERVMK 119 Query: 121 FCTDQEYENFLGAVLQFEHMLIASGIQIMKYYLDISKGEQKARLLDRKTDPLKQWKTSPI 180 FCTD+EYE F+ VL FEHMLI SGIQIMKYYLDI+K EQK RL DR+ DPLKQWKTS I Sbjct: 120 FCTDREYERFMEDVLPFEHMLIGSGIQIMKYYLDITKKEQKRRLKDRRHDPLKQWKTSAI 179 Query: 181 DAVALKHWKDYTGARDRMLAATSSRESPWIVVRADDKRATRLNVIRDLISRLACPETDKH 240 D VA+KHW DYT ARD MLA TSS SPWIVVRADDK LNVIRD+++RL CP+TDKH Sbjct: 180 DEVAVKHWDDYTEARDEMLARTSSPLSPWIVVRADDKHLAHLNVIRDMLTRLECPQTDKH 239 Query: 241 LASPDRSIVFPHDAAHAGRQQLAQ 264 LA PD +VFP+D HA LA+ Sbjct: 240 LAVPDLGVVFPYDETHAQAGLLAK 263 >ref|YP_003262857.1| hypothetical protein Hneap_0972 [Halothiobacillus neapolitanus c2] gb|ACX95810.1| protein of unknown function DUF344 [Halothiobacillus neapolitanus c2] Length = 265 Score = 339 bits (869), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 161/250 (64%), Positives = 189/250 (75%) Query: 14 SGKAYRAALHDLQVELVKVQRHIIEHGHRVLIIFEGRDAAGKDGTIKRIVQHLSPRETRV 73 + KAY LH LQVELVK+Q+H I G R+L++ EGRD+ GKDGTIKRI+QHLSPRETRV Sbjct: 15 TKKAYEHELHGLQVELVKLQKHFIAQGERILVLLEGRDSGGKDGTIKRIIQHLSPRETRV 74 Query: 74 VALGKPSDHDRASWYFQRYVPYLPAAQEMILFNRSWYNRAGVEHVMGFCTDQEYENFLGA 133 VALGKPS+ DR SWYFQRYVP+LP+A+EM+LFNRSWYNRAGVE VMGFCTD EYE F+ Sbjct: 75 VALGKPSERDRTSWYFQRYVPHLPSAEEMVLFNRSWYNRAGVERVMGFCTDAEYEEFMET 134 Query: 134 VLQFEHMLIASGIQIMKYYLDISKGEQKARLLDRKTDPLKQWKTSPIDAVALKHWKDYTG 193 V FE MLI SGI + KYYLDISK EQK RL R+TDPLK WK SPIDAVA KHW DY+ Sbjct: 135 VPAFEQMLIRSGISLFKYYLDISKDEQKKRLAARRTDPLKLWKMSPIDAVAQKHWDDYSA 194 Query: 194 ARDRMLAATSSRESPWIVVRADDKRATRLNVIRDLISRLACPETDKHLASPDRSIVFPHD 253 AR+ M A T S +PW VVRA+DK+ RLNVI+DL+ RL + D L P+ IVF + Sbjct: 195 ARNEMFARTHSALTPWTVVRANDKKHARLNVIKDLLERLDYADKDHALICPNPDIVFTYA 254 Query: 254 AAHAGRQQLA 263 A+ +A Sbjct: 255 EAYLDNGMIA 264 >ref|YP_412105.1| hypothetical protein Nmul_A1410 [Nitrosospira multiformis ATCC 25196] gb|ABB74713.1| Protein of unknown function DUF344 [Nitrosospira multiformis ATCC 25196] Length = 268 Score = 335 bits (859), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 160/254 (62%), Positives = 195/254 (76%) Query: 10 AHHESGKAYRAALHDLQVELVKVQRHIIEHGHRVLIIFEGRDAAGKDGTIKRIVQHLSPR 69 A S + Y L+ LQVELVK+QRH+IE G ++LII EGRDA+GKDGTIKRI +HLSPR Sbjct: 14 ASEISKEDYEDTLYKLQVELVKLQRHLIECGDKILIIMEGRDASGKDGTIKRITEHLSPR 73 Query: 70 ETRVVALGKPSDHDRASWYFQRYVPYLPAAQEMILFNRSWYNRAGVEHVMGFCTDQEYEN 129 ETRVVALGKPSD DR +WYFQRYV YLPAAQE++LFNRSWYNRAGVE VMGFCTD EYE Sbjct: 74 ETRVVALGKPSDRDRNTWYFQRYVQYLPAAQELVLFNRSWYNRAGVEKVMGFCTDTEYEE 133 Query: 130 FLGAVLQFEHMLIASGIQIMKYYLDISKGEQKARLLDRKTDPLKQWKTSPIDAVALKHWK 189 F+G+V++FE MLI SGI+++KYYLDISK EQ+ RL R+ DPL QWK S +D AL+ W Sbjct: 134 FMGSVVEFELMLIRSGIKLLKYYLDISKPEQEKRLSQRRKDPLAQWKISALDGYALEKWD 193 Query: 190 DYTGARDRMLAATSSRESPWIVVRADDKRATRLNVIRDLISRLACPETDKHLASPDRSIV 249 +YT ARD+ML T + +PWI+V AD+K+ TRLNVI+D++SRL + D+HL PD IV Sbjct: 194 EYTLARDKMLTHTHNLITPWIIVHADNKQLTRLNVIKDILSRLDYKDKDEHLILPDPQIV 253 Query: 250 FPHDAAHAGRQQLA 263 A+ LA Sbjct: 254 SIFTASFIEEGLLA 267 >ref|YP_001413138.1| hypothetical protein Plav_1864 [Parvibaculum lavamentivorans DS-1] gb|ABS63481.1| protein of unknown function DUF344 [Parvibaculum lavamentivorans DS-1] Length = 263 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 159/251 (63%), Positives = 192/251 (76%) Query: 5 SRTRTAHHESGKAYRAALHDLQVELVKVQRHIIEHGHRVLIIFEGRDAAGKDGTIKRIVQ 64 S+ ++ SGK YR L++LQVELVK+QR II +G +VL++FEGRD AGKDG IKRI Sbjct: 4 SKPKSRESISGKRYREELYELQVELVKLQREIIANGLKVLVLFEGRDGAGKDGVIKRITA 63 Query: 65 HLSPRETRVVALGKPSDHDRASWYFQRYVPYLPAAQEMILFNRSWYNRAGVEHVMGFCTD 124 HLSPRETR+VALGKPSD + WYFQRY +LPAAQE++LFNRSWYNRAGVE VMGFCTD Sbjct: 64 HLSPRETRIVALGKPSDRQQTEWYFQRYTEHLPAAQELVLFNRSWYNRAGVERVMGFCTD 123 Query: 125 QEYENFLGAVLQFEHMLIASGIQIMKYYLDISKGEQKARLLDRKTDPLKQWKTSPIDAVA 184 EYE F+ +V +E MLI SGI ++KYYLDISK EQKARL R DPLKQWK SPID VA Sbjct: 124 DEYERFMHSVPMYEDMLIGSGIVLVKYYLDISKPEQKARLAARARDPLKQWKVSPIDHVA 183 Query: 185 LKHWKDYTGARDRMLAATSSRESPWIVVRADDKRATRLNVIRDLISRLACPETDKHLASP 244 LKHW+DY+ ARD MLA T S +PW +V A DK+ RLNVIRDL++R+ P + +P Sbjct: 184 LKHWRDYSRARDEMLARTHSLRAPWNIVCAGDKKIARLNVIRDLLTRIDYPGKRVEIVAP 243 Query: 245 DRSIVFPHDAA 255 DR+IV P + + Sbjct: 244 DRAIVTPFEPS 254 >ref|ZP_08485182.1| protein of unknown function DUF344 [Methylomicrobium album BG8] gb|EGL03732.1| protein of unknown function DUF344 [Methylomicrobium album BG8] Length = 261 Score = 332 bits (850), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 157/247 (63%), Positives = 193/247 (78%) Query: 18 YRAALHDLQVELVKVQRHIIEHGHRVLIIFEGRDAAGKDGTIKRIVQHLSPRETRVVALG 77 Y+AAL LQ+ELVK+Q+HII+HG +VLI+FEGRDA GKDG+IKRI QHLSPRETRVVALG Sbjct: 15 YQAALIRLQIELVKLQKHIIKHGEKVLILFEGRDAGGKDGSIKRITQHLSPRETRVVALG 74 Query: 78 KPSDHDRASWYFQRYVPYLPAAQEMILFNRSWYNRAGVEHVMGFCTDQEYENFLGAVLQF 137 KPSD D++SWYFQRYVP+LPAAQEM LFNRSWYNRAGVE VMGFC+D EY FL V F Sbjct: 75 KPSDRDQSSWYFQRYVPHLPAAQEMALFNRSWYNRAGVERVMGFCSDGEYHEFLETVPDF 134 Query: 138 EHMLIASGIQIMKYYLDISKGEQKARLLDRKTDPLKQWKTSPIDAVALKHWKDYTGARDR 197 E ML+ SGI+++KYYLDIS+ EQK RL DR+ DPLKQWK SPID A+KHW DY+ AR+ Sbjct: 135 ELMLVRSGIKLLKYYLDISREEQKRRLEDRERDPLKQWKISPIDVEAVKHWDDYSLARNI 194 Query: 198 MLAATSSRESPWIVVRADDKRATRLNVIRDLISRLACPETDKHLASPDRSIVFPHDAAHA 257 M A T ++PW VVRADDK++ RLN+I+D++ RL + + PD IVF + ++ Sbjct: 195 MFARTHHLDAPWTVVRADDKKSARLNIIKDMLFRLDYKDKNDAEVLPDTDIVFNYAESYL 254 Query: 258 GRQQLAQ 264 +A+ Sbjct: 255 KNGMIAE 261