BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0056.0011.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772339.1| hypothetical protein blr5699 [Bradyrhizobium ja... 390 e-107 ref|ZP_07027097.1| putative transcriptional regulator, Crp/Fnr f... 194 1e-47 ref|YP_570725.1| cyclic nucleotide-binding protein [Rhodopseudom... 191 7e-47 ref|YP_002289168.1| cyclic nucleotide-binding protein [Oligotrop... 190 2e-46 ref|ZP_08629841.1| putative cyclic nucleotide-binding domain-con... 188 8e-46 >ref|NP_772339.1| hypothetical protein blr5699 [Bradyrhizobium japonicum USDA 110] dbj|BAC50964.1| blr5699 [Bradyrhizobium japonicum USDA 110] Length = 299 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/252 (76%), Positives = 221/252 (87%) Query: 1 MLDRILDAATDNLRFAKILVQMGLDPNNVTWDAIFSRLLEIFLHNITLANMFALVGAIFF 60 +LDRILDAATDNLR AKILVQMGLDPNNVT+DAIF+R+LEIF+ NITLAN+FA VGA FF Sbjct: 42 ILDRILDAATDNLRIAKILVQMGLDPNNVTYDAIFNRMLEIFVQNITLANLFAAVGAGFF 101 Query: 61 VATLLTQTMVPLRVANMIGCVFFAIFGALTGAVTTFLLYLLMVPINAYRLRQMLALVKKA 120 VATLL +TMVPLRVANM+GC FFA+FGAL+ V+TFLLYLL++PINA RLRQML LVKKA Sbjct: 102 VATLLMRTMVPLRVANMVGCAFFAVFGALSANVSTFLLYLLLLPINALRLRQMLKLVKKA 161 Query: 121 RAATQGDMSMEWLKPFMTQRKYRKGDILMEKGEAASEMLLTVTGKFRVVEINVDVPPGRL 180 R A +GDMS+EWLKPFMT+RKYR+GD L + G+ A EMLLTVTGKF V EINV++ PG L Sbjct: 162 RHAAEGDMSIEWLKPFMTERKYRRGDTLFKLGDPAKEMLLTVTGKFLVKEINVEIGPGAL 221 Query: 181 MGELGFLTPDNRRTATIECIEDGHVLTITYEGLLEIYFQNPQFGYYFLVLTSQRLLENLA 240 MGELGFLTPDNRRT TIEC+EDG VLTITY+ LLEIYFQ+PQFGYYFLVLTSQRLL+N+ Sbjct: 222 MGELGFLTPDNRRTGTIECVEDGQVLTITYDRLLEIYFQDPQFGYYFLVLTSQRLLQNID 281 Query: 241 RAEAIIAQNRIA 252 R + +A R A Sbjct: 282 RLQKQLATERAA 293 >ref|ZP_07027097.1| putative transcriptional regulator, Crp/Fnr family [Afipia sp. 1NLS2] gb|EFI51940.1| putative transcriptional regulator, Crp/Fnr family [Afipia sp. 1NLS2] Length = 221 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 87/195 (44%), Positives = 132/195 (67%) Query: 53 ALVGAIFFVATLLTQTMVPLRVANMIGCVFFAIFGALTGAVTTFLLYLLMVPINAYRLRQ 112 L+ + F VA +TM+PLRV +I V F I+ L+++++P+N YRLR+ Sbjct: 19 GLIASAFVVAGYTMRTMIPLRVVGIITNVVFIIYAMSHRNYPIVALHMILLPLNVYRLRE 78 Query: 113 MLALVKKARAATQGDMSMEWLKPFMTQRKYRKGDILMEKGEAASEMLLTVTGKFRVVEIN 172 ML LV+ + + G++SM WLKPFMT+R + G++L K E A+EM V+G+FR+VE Sbjct: 79 MLVLVRNVKRSVSGNLSMNWLKPFMTERHCQPGEVLFYKHERATEMFYIVSGRFRLVESG 138 Query: 173 VDVPPGRLMGELGFLTPDNRRTATIECIEDGHVLTITYEGLLEIYFQNPQFGYYFLVLTS 232 +++P G ++GE G L+PDN RT T+EC+E G VL++TY+ + E+Y QNP+FG+YFL L S Sbjct: 139 IELPVGSIVGEFGMLSPDNERTQTLECVEKGLVLSVTYQKVEELYVQNPEFGFYFLRLVS 198 Query: 233 QRLLENLARAEAIIA 247 RL +N+ + EA +A Sbjct: 199 ARLFQNVGKLEAQVA 213 >ref|YP_570725.1| cyclic nucleotide-binding protein [Rhodopseudomonas palustris BisB5] gb|ABE40824.1| cyclic nucleotide-binding protein [Rhodopseudomonas palustris BisB5] Length = 224 Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 94/210 (44%), Positives = 133/210 (63%), Gaps = 3/210 (1%) Query: 44 HNITLANMFALVGAIFFVATLLTQTMVPLRVANMIGCVFFAIFGALTGAVTTFLLYLLMV 103 H T ++FA IF VAT +TM+PLRV M+ + T T L+ +++ Sbjct: 9 HAGTAGSLFA---TIFVVATYTMRTMIPLRVFGMLTNLLLIAVSIPTHNYPTLALHAVLL 65 Query: 104 PINAYRLRQMLALVKKARAATQGDMSMEWLKPFMTQRKYRKGDILMEKGEAASEMLLTVT 163 P+NAYRL QML LV+ + + D+SMEWLKPFMT+RK G+ L K E A M V+ Sbjct: 66 PLNAYRLHQMLQLVRDVKKSVNSDLSMEWLKPFMTERKCEAGEELFYKDEKAEHMFYIVS 125 Query: 164 GKFRVVEINVDVPPGRLMGELGFLTPDNRRTATIECIEDGHVLTITYEGLLEIYFQNPQF 223 G+FR+VE +++P G ++GELG L+P N RT T+EC+E G VL+++Y + E+Y QNP+F Sbjct: 126 GRFRLVESGIELPVGAIVGELGMLSPSNTRTQTLECVESGVVLSVSYRQVEELYVQNPEF 185 Query: 224 GYYFLVLTSQRLLENLARAEAIIAQNRIAV 253 G+YFL L S RL +N+ EA +AQ + V Sbjct: 186 GFYFLRLASARLFQNIEVLEARLAQAHVPV 215 >ref|YP_002289168.1| cyclic nucleotide-binding protein [Oligotropha carboxidovorans OM5] ref|YP_004632795.1| cyclic nucleotide-binding domain-containing protein [Oligotropha carboxidovorans OM5] gb|ACI93303.1| cyclic nucleotide-binding protein [Oligotropha carboxidovorans OM5] gb|AEI02978.1| cyclic nucleotide-binding domain protein [Oligotropha carboxidovorans OM4] gb|AEI06554.1| cyclic nucleotide-binding domain protein [Oligotropha carboxidovorans OM5] Length = 221 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 84/195 (43%), Positives = 132/195 (67%) Query: 53 ALVGAIFFVATLLTQTMVPLRVANMIGCVFFAIFGALTGAVTTFLLYLLMVPINAYRLRQ 112 L+ + F VA +TM+PLR+ +I + F F + L+++++P+N YRLR+ Sbjct: 19 GLIASAFVVAGYTMRTMIPLRIVGIITNIVFIFFAMVHHNYPIVALHVILLPLNIYRLRE 78 Query: 113 MLALVKKARAATQGDMSMEWLKPFMTQRKYRKGDILMEKGEAASEMLLTVTGKFRVVEIN 172 ML LV+ + + ++SM WLKPFMT+R+ R G++L K E A+EM V+G++R+VE Sbjct: 79 MLVLVRNVKRSINSNLSMNWLKPFMTERRCRAGEVLFYKHEPATEMFYIVSGRYRLVESG 138 Query: 173 VDVPPGRLMGELGFLTPDNRRTATIECIEDGHVLTITYEGLLEIYFQNPQFGYYFLVLTS 232 +++P G ++GE G L+PDN RT T+EC+EDG VL ++Y+ + E+Y QNP+FG+YFL L S Sbjct: 139 IELPIGAIVGEFGMLSPDNARTQTLECLEDGVVLGVSYQKVEELYVQNPEFGFYFLRLVS 198 Query: 233 QRLLENLARAEAIIA 247 RL +N+ + EA +A Sbjct: 199 ARLFQNVGKLEAQVA 213 >ref|ZP_08629841.1| putative cyclic nucleotide-binding domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07484.1| putative cyclic nucleotide-binding domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] Length = 217 Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 86/197 (43%), Positives = 130/197 (65%) Query: 53 ALVGAIFFVATLLTQTMVPLRVANMIGCVFFAIFGALTGAVTTFLLYLLMVPINAYRLRQ 112 + + F VA +TM+PLR+ +I V F + +L+++++P+N YRLR+ Sbjct: 15 GFIASAFVVAGYTMRTMIPLRIFGIITNVLLIGFSLVHHHYPVMVLHMILLPLNVYRLRE 74 Query: 113 MLALVKKARAATQGDMSMEWLKPFMTQRKYRKGDILMEKGEAASEMLLTVTGKFRVVEIN 172 ML LV + + + D+SM WLKPFMT+RK G++L K E A EM V+G++R+VE Sbjct: 75 MLLLVAEVKRSVNSDLSMAWLKPFMTERKCTTGEVLFYKHEQAEEMYYIVSGRYRLVESG 134 Query: 173 VDVPPGRLMGELGFLTPDNRRTATIECIEDGHVLTITYEGLLEIYFQNPQFGYYFLVLTS 232 +++P G L+GELG L+P N+RT T+EC+E G VL++TY + E+Y QNP+FG+YFL L S Sbjct: 135 IELPAGALVGELGMLSPSNKRTQTLECLEGGLVLSVTYAKVQELYVQNPEFGFYFLRLVS 194 Query: 233 QRLLENLARAEAIIAQN 249 RL +NL R E +A++ Sbjct: 195 ARLFQNLGRLETQLAES 211