BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0056.0003.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08627056.1| hypothetical protein CSIRO_0113 [Bradyrhizobi... 303 7e-81 ref|YP_001243081.1| putative ParB-like nuclease [Bradyrhizobium ... 253 1e-65 ref|YP_319461.1| ParB-like nuclease [Nitrobacter winogradskyi Nb... 236 2e-60 ref|YP_002289441.1| ParB domain protein nuclease [Oligotropha ca... 235 3e-60 ref|YP_001685432.1| nuclease [Caulobacter sp. K31] >gi|167350199... 231 6e-59 >ref|ZP_08627056.1| hypothetical protein CSIRO_0113 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10336.1| hypothetical protein CSIRO_0113 [Bradyrhizobiaceae bacterium SG-6C] Length = 671 Score = 303 bits (777), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 158/204 (77%), Positives = 176/204 (86%) Query: 1 VAITHALAAQIFYVGAAAHVAGIQPVKTDLAAHADGIEDTRAGKAWSDRHANWARQMPKD 60 VA+THALAAQIFY+GA AHV GIQPVK DLA HADGIEDT AGKAW+DRHANWARQ+P+D Sbjct: 468 VAVTHALAAQIFYLGADAHVVGIQPVKADLAGHADGIEDTAAGKAWADRHANWARQIPRD 527 Query: 61 VAALWEFVAELDHDSRMALLAHCVSLTVNAVKLPFDRRPRALAAARRLAEAVALDMTSYW 120 VA LW FVAELDHDSRMAL AHCV+LTVNAVKLP++RRPRALA A RLAEAV+LDMT YW Sbjct: 528 VANLWAFVAELDHDSRMALFAHCVALTVNAVKLPWERRPRALATADRLAEAVSLDMTGYW 587 Query: 121 RPTVRSYLGRVTKANILAAVREGLSEEAAERMSAMKKADMAQAAEQLLAATDWLPSLLRT 180 RPT RSYLGR+TKA IL AV +G+S EAAERM MKK DMA+AAEQLLAATDWLPSLLRT Sbjct: 588 RPTARSYLGRITKARILEAVCDGVSGEAAERMGDMKKVDMAEAAEQLLAATDWLPSLLRT 647 Query: 181 AALQGPTDLQSEAQGSEPHAEAAE 204 A Q TD ++ QG + ++EAAE Sbjct: 648 AKPQEGTDAPTDVQGGDAYSEAAE 671 >ref|YP_001243081.1| putative ParB-like nuclease [Bradyrhizobium sp. BTAi1] gb|ABQ39175.1| putative ParB-like nuclease [Bradyrhizobium sp. BTAi1] Length = 528 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 124/180 (68%), Positives = 146/180 (81%) Query: 1 VAITHALAAQIFYVGAAAHVAGIQPVKTDLAAHADGIEDTRAGKAWSDRHANWARQMPKD 60 VA+THAL+AQIFY GA AH I+P T LA+HADGIEDT+AGKAW+D HA WA QMP+D Sbjct: 320 VAVTHALSAQIFYRGADAHALDIRPASTMLASHADGIEDTKAGKAWADHHARWAAQMPRD 379 Query: 61 VAALWEFVAELDHDSRMALLAHCVSLTVNAVKLPFDRRPRALAAARRLAEAVALDMTSYW 120 V LW F+ ELD DSRMAL AHC +LTVNAVKLP +RR RA+A A RLAEAV+LDMT++W Sbjct: 380 VCGLWTFIVELDPDSRMALFAHCAALTVNAVKLPTERRRRAMATADRLAEAVSLDMTAHW 439 Query: 121 RPTVRSYLGRVTKANILAAVREGLSEEAAERMSAMKKADMAQAAEQLLAATDWLPSLLRT 180 PT R+Y GRVTK +ILAAVRE + EAA+RM+ MKK DMA+AAEQL+ AT WLP L+RT Sbjct: 440 IPTARTYFGRVTKPHILAAVREAVGIEAADRMADMKKQDMAEAAEQLVIATGWLPVLMRT 499 >ref|YP_319461.1| ParB-like nuclease [Nitrobacter winogradskyi Nb-255] gb|ABA06109.1| ParB-like nuclease [Nitrobacter winogradskyi Nb-255] Length = 726 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 125/208 (60%), Positives = 153/208 (73%), Gaps = 4/208 (1%) Query: 1 VAITHALAAQIFYVGAAAHVAGIQPVKTDLAAHADGIEDTRAGKAWSDRHANWARQMPKD 60 +A+THALAAQ FY AH I+P LA+HADGIEDT A KA +DRHA WA MP+D Sbjct: 519 IAVTHALAAQTFYHAVDAHCLDIRPNSAHLASHADGIEDTAAAKALADRHAGWAADMPRD 578 Query: 61 VAALWEFVAELDHDSRMALLAHCVSLTVNAVKLPFDRRPRALAAARRLAEAVALDMTSYW 120 VA LW F+A LDH S MAL AHC S T+NAVKLP++R+PRA A A +LA A+ALDMT+ W Sbjct: 579 VADLWGFIAGLDHASVMALFAHCASQTINAVKLPWERKPRAHATADKLATALALDMTANW 638 Query: 121 RPTVRSYLGRVTKANILAAVREGLSEEAAERMSAMKKADMAQAAEQLLAATDWLPSLLRT 180 PTVR+YLGRVTKA IL AVRE +S+EAA+R++++KK MA+AAEQLLA T WLP L+RT Sbjct: 639 TPTVRTYLGRVTKALILDAVREAVSDEAADRLASVKKQPMAEAAEQLLAGTGWLPPLMRT 698 Query: 181 A----ALQGPTDLQSEAQGSEPHAEAAE 204 A GP + + +G+E EAAE Sbjct: 699 TPVAEAESGPVEDIAAPEGNEGFPEAAE 726 >ref|YP_002289441.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5] ref|YP_004632543.1| hypothetical protein OCA5_c15880 [Oligotropha carboxidovorans OM5] gb|ACI93576.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5] gb|AEI02726.1| uncharacterized protein YubM [Oligotropha carboxidovorans OM4] gb|AEI06302.1| uncharacterized protein YubM [Oligotropha carboxidovorans OM5] Length = 733 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 116/180 (64%), Positives = 142/180 (78%) Query: 1 VAITHALAAQIFYVGAAAHVAGIQPVKTDLAAHADGIEDTRAGKAWSDRHANWARQMPKD 60 +A+THALAAQ FY GA AH I+P T L HADGIEDT A KA +DRHA WA MP++ Sbjct: 514 IAVTHALAAQTFYRGAEAHCLEIRPSSTYLGGHADGIEDTAAAKALADRHAGWAADMPRN 573 Query: 61 VAALWEFVAELDHDSRMALLAHCVSLTVNAVKLPFDRRPRALAAARRLAEAVALDMTSYW 120 VA LW+F+A LDH S MAL AHC S TVNAVKLP +++PRA A RLA A+ALDMT++W Sbjct: 574 VADLWDFIAGLDHASVMALFAHCASQTVNAVKLPAEKKPRAHETADRLATALALDMTAHW 633 Query: 121 RPTVRSYLGRVTKANILAAVREGLSEEAAERMSAMKKADMAQAAEQLLAATDWLPSLLRT 180 PTVR+YLGR+TKA+ILAAVRE +S+EAA+R++++KK MA+AAEQLL T WLP L+RT Sbjct: 634 TPTVRTYLGRITKAHILAAVREAVSDEAADRIASLKKQPMAEAAEQLLVGTGWLPPLMRT 693 >ref|YP_001685432.1| nuclease [Caulobacter sp. K31] gb|ABZ72934.1| ParB domain protein nuclease [Caulobacter sp. K31] Length = 694 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 120/194 (61%), Positives = 143/194 (73%) Query: 1 VAITHALAAQIFYVGAAAHVAGIQPVKTDLAAHADGIEDTRAGKAWSDRHANWARQMPKD 60 +A+THALAAQ FY G AH I+P L HADGIEDT A K +DRH WA MP+D Sbjct: 479 IAVTHALAAQTFYRGVEAHCLDIRPSSAHLGGHADGIEDTAAAKLLADRHDGWAGDMPRD 538 Query: 61 VAALWEFVAELDHDSRMALLAHCVSLTVNAVKLPFDRRPRALAAARRLAEAVALDMTSYW 120 VA LW+FVA LDH S MAL AHC SLTVNAVK P++R+ RA AA +LA AV+LDMT++W Sbjct: 539 VADLWDFVAGLDHASVMALFAHCASLTVNAVKQPWERKARAHEAADKLATAVSLDMTAHW 598 Query: 121 RPTVRSYLGRVTKANILAAVREGLSEEAAERMSAMKKADMAQAAEQLLAATDWLPSLLRT 180 TVR+YLGRVTKA+ LAAVRE +S+EAAER+S +KK MA+AAEQLLA T WLP+L+RT Sbjct: 599 TSTVRTYLGRVTKAHNLAAVREAVSDEAAERLSGLKKQPMAEAAEQLLAGTGWLPTLMRT 658 Query: 181 AALQGPTDLQSEAQ 194 A P Q + Q Sbjct: 659 AEPAWPAIEQPDVQ 672