BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0001.p         (175 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08627056.1| hypothetical protein CSIRO_0113 [Bradyrhizobi...   211   3e-53
ref|YP_002287035.1| ParB domain protein nuclease [Oligotropha ca...   180   8e-44
ref|YP_001685432.1| nuclease [Caulobacter sp. K31] >gi|167350199...   174   6e-42
ref|YP_319461.1| ParB-like nuclease [Nitrobacter winogradskyi Nb...   172   2e-41
ref|ZP_01048654.1| ParB-like nuclease [Nitrobacter sp. Nb-311A] ...   169   1e-40

>ref|ZP_08627056.1| hypothetical protein CSIRO_0113 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP10336.1| hypothetical protein CSIRO_0113 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 671

 Score =  211 bits (538), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 102/117 (87%), Positives = 111/117 (94%)

Query: 1   MHPADQFEAFRKLADESGLGAEEIAARFGVTAHVVRQRLRLGAVSPKLVQLYREGDLTLE 60
           MHPADQFEAF+KLA+E G GAEEIAARFGVT HVVRQRLRLGAVSPKL+Q+YREGDL LE
Sbjct: 123 MHPADQFEAFKKLAEERGFGAEEIAARFGVTPHVVRQRLRLGAVSPKLMQVYREGDLALE 182

Query: 61  QLMAFAITDDHARQEAVYERLPFDPDASTIRRLLTETHVAATDRRARFVGLEAYTEA 117
           QLMAFAITDDHARQE+VYERL ++ DASTIRR+LTETHVAATDRRARFVG+EAYTEA
Sbjct: 183 QLMAFAITDDHARQESVYERLSYNRDASTIRRMLTETHVAATDRRARFVGIEAYTEA 239


>ref|YP_002287035.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5]
 ref|YP_004631453.1| ParB-like domain-containing protein [Oligotropha carboxidovorans
           OM5]
 gb|ACI91170.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5]
 gb|AEI01637.1| ParB-like domain protein [Oligotropha carboxidovorans OM4]
 gb|AEI05212.1| ParB-like domain protein [Oligotropha carboxidovorans OM5]
          Length = 697

 Score =  180 bits (456), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 88/117 (75%), Positives = 104/117 (88%)

Query: 1   MHPADQFEAFRKLADESGLGAEEIAARFGVTAHVVRQRLRLGAVSPKLVQLYREGDLTLE 60
           +HPAD+FE FR+LA+  G GAEEIAARFGVTAHVV+QRLRLGAVSPKL+Q+YR+G+LTL+
Sbjct: 124 LHPADEFERFRELAENRGWGAEEIAARFGVTAHVVKQRLRLGAVSPKLMQVYRDGELTLD 183

Query: 61  QLMAFAITDDHARQEAVYERLPFDPDASTIRRLLTETHVAATDRRARFVGLEAYTEA 117
           QLMAFAIT+DHARQE VY  L ++ DASTIRR LT+ +VAATDRRA FVG +AYTEA
Sbjct: 184 QLMAFAITEDHARQEQVYANLSWNRDASTIRRDLTKANVAATDRRAIFVGAQAYTEA 240


>ref|YP_001685432.1| nuclease [Caulobacter sp. K31]
 gb|ABZ72934.1| ParB domain protein nuclease [Caulobacter sp. K31]
          Length = 694

 Score =  174 bits (440), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/117 (73%), Positives = 98/117 (83%)

Query: 1   MHPADQFEAFRKLADESGLGAEEIAARFGVTAHVVRQRLRLGAVSPKLVQLYREGDLTLE 60
           +HPADQFE FR+LA+  G GAEEIAARFGVT HVVRQRLRLGAVSPKL+Q+YR+  LTL+
Sbjct: 131 LHPADQFERFRELAENKGWGAEEIAARFGVTPHVVRQRLRLGAVSPKLMQVYRDEGLTLD 190

Query: 61  QLMAFAITDDHARQEAVYERLPFDPDASTIRRLLTETHVAATDRRARFVGLEAYTEA 117
           QLMAFAI +DHARQE VYE L ++ D S IRR LT +H+AA DRRA FVG EAYTEA
Sbjct: 191 QLMAFAIVEDHARQEQVYENLSYNRDPSIIRRDLTRSHIAAADRRAIFVGPEAYTEA 247


>ref|YP_319461.1| ParB-like nuclease [Nitrobacter winogradskyi Nb-255]
 gb|ABA06109.1| ParB-like nuclease [Nitrobacter winogradskyi Nb-255]
          Length = 726

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 101/117 (86%)

Query: 1   MHPADQFEAFRKLADESGLGAEEIAARFGVTAHVVRQRLRLGAVSPKLVQLYREGDLTLE 60
           MHPADQFEAFR+LA+  G GAEEIAARFGVTAHVV+QRLRLGAVSPKL+Q+YR+G LTL+
Sbjct: 168 MHPADQFEAFRELAETRGWGAEEIAARFGVTAHVVKQRLRLGAVSPKLMQVYRDGGLTLD 227

Query: 61  QLMAFAITDDHARQEAVYERLPFDPDASTIRRLLTETHVAATDRRARFVGLEAYTEA 117
           QLMAFAIT+DH+RQE VYE L ++ D S IRR L + +V A+DRRA F+G E+Y+EA
Sbjct: 228 QLMAFAITEDHSRQEQVYESLSYNRDPSFIRRELMQANVPASDRRAIFIGPESYSEA 284


>ref|ZP_01048654.1| ParB-like nuclease [Nitrobacter sp. Nb-311A]
 gb|EAQ33395.1| ParB-like nuclease [Nitrobacter sp. Nb-311A]
          Length = 645

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 98/117 (83%)

Query: 1   MHPADQFEAFRKLADESGLGAEEIAARFGVTAHVVRQRLRLGAVSPKLVQLYREGDLTLE 60
           +HPADQF AFR+LA+  G GAEEIAARFGVTAHVV+QRLRLGAVSPKL+Q+YR+G LTL+
Sbjct: 72  LHPADQFGAFRELAEHRGWGAEEIAARFGVTAHVVKQRLRLGAVSPKLMQVYRDGGLTLD 131

Query: 61  QLMAFAITDDHARQEAVYERLPFDPDASTIRRLLTETHVAATDRRARFVGLEAYTEA 117
           QLMAFAIT+DHARQE V+  L ++ D S IRR L + H+ ATDRRA FVG EAY EA
Sbjct: 132 QLMAFAITEDHARQEQVHANLSYNRDPSFIRRDLMKMHIPATDRRAIFVGAEAYMEA 188