BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0055.0008.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770919.1| NADH dehydrogenase [Bradyrhizobium japonicum US...   202   2e-50
ref|YP_001205488.1| NADH dehydrogenase [Bradyrhizobium sp. ORS 2...   196   1e-48
ref|YP_001240193.1| NADH dehydrogenase [Bradyrhizobium sp. BTAi1...   192   1e-47
ref|YP_577083.1| NADH dehydrogenase [Nitrobacter hamburgensis X1...   192   1e-47
ref|ZP_01047149.1| NADH-ubiquinone oxidoreductase [Nitrobacter s...   191   2e-47

>ref|NP_770919.1| NADH dehydrogenase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49544.1| blr4279 [Bradyrhizobium japonicum USDA 110]
          Length = 135

 Score =  202 bits (513), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/116 (79%), Positives = 100/116 (86%)

Query: 1   MKQFLLKFFTWWNGQTFGTQLWTSRFGELVGEDEQGNRYYRTKGGEVDPTLHFERRWVVY 60
           MKQF LKFFTWW+GQTFGTQLWT R+GELVG+DEQGN YYRT+GG +DPTL FERRWV+Y
Sbjct: 1   MKQFFLKFFTWWSGQTFGTQLWTKRYGELVGQDEQGNLYYRTRGGAIDPTLGFERRWVIY 60

Query: 61  NGYAEASRIPAGWHGWLHHTVDVPPTEQNYQAREWEKPHLPNLTGTAQAYRXCART 116
           NGYAEASRIP  WHGW+HH VDVPPT+ NYQ REWEKPH PNLTGTA AYR    T
Sbjct: 61  NGYAEASRIPPSWHGWIHHVVDVPPTQDNYQPREWEKPHQPNLTGTANAYRPSGST 116


>ref|YP_001205488.1| NADH dehydrogenase [Bradyrhizobium sp. ORS 278]
 emb|CAL77262.1| putative NADH-ubiquinone oxidoreductase subunit B17.2 (Complex
           I-B17.2) (CI-B17.2) [Bradyrhizobium sp. ORS 278]
          Length = 136

 Score =  196 bits (498), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 97/116 (83%)

Query: 1   MKQFLLKFFTWWNGQTFGTQLWTSRFGELVGEDEQGNRYYRTKGGEVDPTLHFERRWVVY 60
           MKQF LK FTWWNGQTFGTQLWT RFGELVG+D QGNRYYRT GG++DP LHFERRWVVY
Sbjct: 1   MKQFFLKLFTWWNGQTFGTQLWTWRFGELVGQDAQGNRYYRTAGGKIDPVLHFERRWVVY 60

Query: 61  NGYAEASRIPAGWHGWLHHTVDVPPTEQNYQAREWEKPHLPNLTGTAQAYRXCART 116
           NG AEASRIP  WHGW+HHTVDVPPT+  Y+ REWEKPH PNLTGT  AYR    T
Sbjct: 61  NGLAEASRIPPEWHGWIHHTVDVPPTQDGYKVREWEKPHQPNLTGTPLAYRPAGST 116


>ref|YP_001240193.1| NADH dehydrogenase [Bradyrhizobium sp. BTAi1]
 gb|ABQ36287.1| putative NADH-ubiquinone oxidoreductase subunit B17.2 (Complex
           I-B17.2) (CI-B17.2) [Bradyrhizobium sp. BTAi1]
          Length = 136

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 95/116 (81%)

Query: 1   MKQFLLKFFTWWNGQTFGTQLWTSRFGELVGEDEQGNRYYRTKGGEVDPTLHFERRWVVY 60
           MKQF LK FTWWNGQTFGTQLWT RFGELVG+D QGNRYYRT GG++DP LHFERRWV+Y
Sbjct: 1   MKQFFLKLFTWWNGQTFGTQLWTWRFGELVGQDGQGNRYYRTAGGKIDPVLHFERRWVIY 60

Query: 61  NGYAEASRIPAGWHGWLHHTVDVPPTEQNYQAREWEKPHLPNLTGTAQAYRXCART 116
           NG AEASRIP  WH W+HH VDVPPTE  Y+ REWEKPH PNLTGT  AYR    T
Sbjct: 61  NGLAEASRIPPEWHAWMHHMVDVPPTEDGYKPREWEKPHQPNLTGTPLAYRPAGST 116


>ref|YP_577083.1| NADH dehydrogenase [Nitrobacter hamburgensis X14]
 gb|ABE62623.1| NADH--ubiquinone oxidoreductase 17.2 kD subunit [Nitrobacter
           hamburgensis X14]
          Length = 145

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 98/116 (84%)

Query: 1   MKQFLLKFFTWWNGQTFGTQLWTSRFGELVGEDEQGNRYYRTKGGEVDPTLHFERRWVVY 60
           MKQF LK FTWWN QTFGTQLWT RFGELVG+D QGN YYRT+GG++DPTL FERRWV+Y
Sbjct: 10  MKQFFLKLFTWWNSQTFGTQLWTWRFGELVGKDNQGNCYYRTRGGKIDPTLGFERRWVIY 69

Query: 61  NGYAEASRIPAGWHGWLHHTVDVPPTEQNYQAREWEKPHLPNLTGTAQAYRXCART 116
           NGY EASRIP  WHGW+HH VDVPPT++NYQ REW+KPH+PN+TGT  AYR    T
Sbjct: 70  NGYTEASRIPPEWHGWMHHVVDVPPTKENYQPREWQKPHVPNMTGTPAAYRPPGST 125


>ref|ZP_01047149.1| NADH-ubiquinone oxidoreductase [Nitrobacter sp. Nb-311A]
 gb|EAQ34890.1| NADH-ubiquinone oxidoreductase [Nitrobacter sp. Nb-311A]
          Length = 136

 Score =  191 bits (486), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 98/116 (84%)

Query: 1   MKQFLLKFFTWWNGQTFGTQLWTSRFGELVGEDEQGNRYYRTKGGEVDPTLHFERRWVVY 60
           MKQF LK FTWWN QTFGTQLWT RFGELVG+D +GN YYRT+GG++DPTL FERRWVVY
Sbjct: 1   MKQFFLKLFTWWNSQTFGTQLWTWRFGELVGKDGEGNSYYRTRGGKIDPTLGFERRWVVY 60

Query: 61  NGYAEASRIPAGWHGWLHHTVDVPPTEQNYQAREWEKPHLPNLTGTAQAYRXCART 116
           NGY EASRIP  WHGW+HH VDVPPT++NYQ REW+KPH+PN+TGT  AYR    T
Sbjct: 61  NGYTEASRIPPEWHGWIHHVVDVPPTKENYQPREWQKPHVPNMTGTPVAYRPAGST 116