BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0055.0006.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240191.1| transcriptional regulator [Bradyrhizobium sp... 498 e-139 ref|YP_001205490.1| bifunctional transcriptional regulator/gluta... 485 e-135 ref|NP_770921.1| transcriptional regulator [Bradyrhizobium japon... 477 e-132 ref|YP_532753.1| AraC family transcriptional regulator [Rhodopse... 462 e-128 ref|YP_001991685.1| AraC family transcriptional regulator [Rhodo... 456 e-126 >ref|YP_001240191.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ36285.1| transcriptional regulator, AraC family with amidase-like domain [Bradyrhizobium sp. BTAi1] Length = 312 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/312 (75%), Positives = 277/312 (88%) Query: 1 MIGILIFPDFQLLDAAGPIAAFEIAARFANNAPAIRTLAVKAGPVRSSSGVEMLARGLKP 60 MIG+LIFP+FQLLDAAGPI+ FEIAAR+A PA+R +A + GPVRSSSG EMLAR P Sbjct: 1 MIGVLIFPNFQLLDAAGPISVFEIAARYARVVPALRVMAAEPGPVRSSSGAEMLARKFGP 60 Query: 61 ATAITTLIIAGGNGVRTPATCPATLSFVRRMAGRGIRVASVCSGAYVLAEAGLLDGRRAT 120 A+A++TL+IAGG+GV + T++FVR++A RG R+ASVCSGA+VLAEAGLLDGRRAT Sbjct: 61 ASALSTLLIAGGDGVEAASRSSCTINFVRKVAQRGTRIASVCSGAFVLAEAGLLDGRRAT 120 Query: 121 THWQRTPHFVKTYPKIKLEPDQIFVRDGNIWSSAGITAGIDLALAMITEDYGDEVAQNTA 180 THWQRT F+++YP ++LEPD I+VRDG +WSSAGITAGIDLALAM+ ED+G+E+AQ TA Sbjct: 121 THWQRTRQFLRSYPNVRLEPDSIYVRDGQVWSSAGITAGIDLALAMVAEDHGEEIAQKTA 180 Query: 181 RQLVLYHRRSGGQSQFSSLLELKTPNGRFGPLLAWAREHLDAPLTVEDLADKAGMSSRHF 240 RQLVLYHRRSGGQSQFSSLLELK P+GRF LL WAREHLDAPLTV+DLA++AGMS+RHF Sbjct: 181 RQLVLYHRRSGGQSQFSSLLELKAPSGRFADLLTWAREHLDAPLTVDDLAERAGMSTRHF 240 Query: 241 TRAFIAETGTTPSKAVERLRIEVARQRVQSSGEAIERVAEITGFRDPERMRRAFIRAFGQ 300 TRAF+AETGTTPSKA+ERLR+EVAR RVQ+S + IERVAE TGFRDPERMRRAFIRAFGQ Sbjct: 241 TRAFVAETGTTPSKAIERLRLEVARDRVQASHQPIERVAEATGFRDPERMRRAFIRAFGQ 300 Query: 301 PPQSLRRAARAG 312 PPQ+LRRAARAG Sbjct: 301 PPQALRRAARAG 312 >ref|YP_001205490.1| bifunctional transcriptional regulator/glutamine amidotransferase-like domain-containing protein [Bradyrhizobium sp. ORS 278] emb|CAL77264.1| putative bifunctional protein with a transcriptional regulator AraC/XylS family, and a Class I glutamine amidotransferase-like domain [Bradyrhizobium sp. ORS 278] Length = 315 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 233/311 (74%), Positives = 270/311 (86%) Query: 1 MIGILIFPDFQLLDAAGPIAAFEIAARFANNAPAIRTLAVKAGPVRSSSGVEMLARGLKP 60 MIG+LIFPDFQLLDAAGPI+ FEIAAR+A AP IR +A GPVRSSSG EMLAR Sbjct: 1 MIGVLIFPDFQLLDAAGPISVFEIAARYAGAAPTIRVVAAAPGPVRSSSGAEMLARKFGS 60 Query: 61 ATAITTLIIAGGNGVRTPATCPATLSFVRRMAGRGIRVASVCSGAYVLAEAGLLDGRRAT 120 +A++TL+IAGG+GV + TL+FVR++A RG RVASVCSGA+VLAEAGLLDG+RAT Sbjct: 61 VSALSTLLIAGGDGVEAASRNACTLNFVRKVARRGTRVASVCSGAFVLAEAGLLDGKRAT 120 Query: 121 THWQRTPHFVKTYPKIKLEPDQIFVRDGNIWSSAGITAGIDLALAMITEDYGDEVAQNTA 180 THWQRT F++ YP +KLEPD I+VRDG IW+SAGITAGIDLALAM+ ED+G+++AQ TA Sbjct: 121 THWQRTRQFLRAYPDVKLEPDSIYVRDGQIWTSAGITAGIDLALAMVAEDHGEQIAQKTA 180 Query: 181 RQLVLYHRRSGGQSQFSSLLELKTPNGRFGPLLAWAREHLDAPLTVEDLADKAGMSSRHF 240 RQLVLYHRRSGGQSQFSSLLELK P+GRF LL WAREHLDAPL+V+DLA++AGMS+RHF Sbjct: 181 RQLVLYHRRSGGQSQFSSLLELKAPSGRFADLLTWAREHLDAPLSVDDLAERAGMSTRHF 240 Query: 241 TRAFIAETGTTPSKAVERLRIEVARQRVQSSGEAIERVAEITGFRDPERMRRAFIRAFGQ 300 TRAF+AETGTTPSKA+ERLR+EVAR RVQ+S + IE VAE GFRDPERMRRAFIRAFGQ Sbjct: 241 TRAFVAETGTTPSKAIERLRLEVARDRVQASHQPIELVAEAAGFRDPERMRRAFIRAFGQ 300 Query: 301 PPQSLRRAARA 311 PPQ+LRRAARA Sbjct: 301 PPQALRRAARA 311 >ref|NP_770921.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49546.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 312 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 250/312 (80%), Positives = 275/312 (88%) Query: 1 MIGILIFPDFQLLDAAGPIAAFEIAARFANNAPAIRTLAVKAGPVRSSSGVEMLARGLKP 60 MIGILIFPDFQLLDAAGPI+ FE+AAR A A+R LA+ AGPVRSSSGVEM+AR K Sbjct: 1 MIGILIFPDFQLLDAAGPISVFEVAARCAGKPLALRVLAMNAGPVRSSSGVEMMARDFKS 60 Query: 61 ATAITTLIIAGGNGVRTPATCPATLSFVRRMAGRGIRVASVCSGAYVLAEAGLLDGRRAT 120 A AITTL+IAGG GV A C T +FV+R+A RG+RVASVCSGAYVLAEAGLLDGRRAT Sbjct: 61 ANAITTLVIAGGAGVADAARCEVTRAFVQRLARRGVRVASVCSGAYVLAEAGLLDGRRAT 120 Query: 121 THWQRTPHFVKTYPKIKLEPDQIFVRDGNIWSSAGITAGIDLALAMITEDYGDEVAQNTA 180 THW RT FV YPK+K EPDQIF RDGN+W+SAGITAGIDLALAM+TED+G+E+AQ A Sbjct: 121 THWGRTRDFVARYPKVKFEPDQIFTRDGNVWTSAGITAGIDLALAMVTEDHGEEIAQAAA 180 Query: 181 RQLVLYHRRSGGQSQFSSLLELKTPNGRFGPLLAWAREHLDAPLTVEDLADKAGMSSRHF 240 RQLVLYHRRSGGQSQFSSLLELK PNGRFG LL+WARE+LDAPLTVE+LAD+AGMS+RHF Sbjct: 181 RQLVLYHRRSGGQSQFSSLLELKAPNGRFGALLSWARENLDAPLTVEELADRAGMSARHF 240 Query: 241 TRAFIAETGTTPSKAVERLRIEVARQRVQSSGEAIERVAEITGFRDPERMRRAFIRAFGQ 300 RAF AETGTTPSKA+ERLRIEVAR+RVQSS EAIE VAE TGFRDPERMRRAFIRAFGQ Sbjct: 241 ARAFAAETGTTPSKAIERLRIEVARERVQSSREAIELVAEATGFRDPERMRRAFIRAFGQ 300 Query: 301 PPQSLRRAARAG 312 PPQ+LRRAARAG Sbjct: 301 PPQALRRAARAG 312 >ref|YP_532753.1| AraC family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD88434.1| transcriptional regulator, AraC family with amidase-like domain [Rhodopseudomonas palustris BisB18] Length = 322 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 229/310 (73%), Positives = 262/310 (84%) Query: 1 MIGILIFPDFQLLDAAGPIAAFEIAARFANNAPAIRTLAVKAGPVRSSSGVEMLARGLKP 60 MIGILI+P FQLLDAAGPIAAFEIA R A I+ LA + GPVRSSSGVEMLARGL+ Sbjct: 1 MIGILIYPRFQLLDAAGPIAAFEIAGRLAQAPARIKLLATEPGPVRSSSGVEMLARGLRA 60 Query: 61 ATAITTLIIAGGNGVRTPATCPATLSFVRRMAGRGIRVASVCSGAYVLAEAGLLDGRRAT 120 A+A+ TLIIAGG GV A CP T +FVR A RG R+ASVCS +Y+LAEAGLLDGRRAT Sbjct: 61 ASAMRTLIIAGGEGVGVAALCPRTQAFVRAAARRGCRIASVCSASYLLAEAGLLDGRRAT 120 Query: 121 THWQRTPHFVKTYPKIKLEPDQIFVRDGNIWSSAGITAGIDLALAMITEDYGDEVAQNTA 180 THW RT F++ YPK++L+PD+IFVRDG IWSSAGI+AGIDLALA+I E +GD+VAQ+TA Sbjct: 121 THWGRTQDFLRRYPKVRLQPDRIFVRDGEIWSSAGISAGIDLALAIIAEQFGDKVAQDTA 180 Query: 181 RQLVLYHRRSGGQSQFSSLLELKTPNGRFGPLLAWAREHLDAPLTVEDLADKAGMSSRHF 240 RQLV+YHRR+GGQSQFSSLLEL+ P+GRF LL W REHLD LTVE LA +AGMS+RHF Sbjct: 181 RQLVVYHRRAGGQSQFSSLLELQAPDGRFAALLGWVREHLDQTLTVELLAQRAGMSARHF 240 Query: 241 TRAFIAETGTTPSKAVERLRIEVARQRVQSSGEAIERVAEITGFRDPERMRRAFIRAFGQ 300 +RAFIA TG+TP+KAVERLRIEVAR RVQ S EAIE+VA TGF DPERMRRAF+RAFGQ Sbjct: 241 SRAFIAATGSTPAKAVERLRIEVARSRVQESHEAIEQVARGTGFGDPERMRRAFVRAFGQ 300 Query: 301 PPQSLRRAAR 310 PPQ+LRRAAR Sbjct: 301 PPQALRRAAR 310 >ref|YP_001991685.1| AraC family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gb|ACF01210.1| transcriptional regulator, AraC family [Rhodopseudomonas palustris TIE-1] Length = 312 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/311 (71%), Positives = 262/311 (84%) Query: 1 MIGILIFPDFQLLDAAGPIAAFEIAARFANNAPAIRTLAVKAGPVRSSSGVEMLARGLKP 60 MIG+LI+PDFQLLDAAGPIAAFEIAAR+A APAI+ +A +AG VRSSSG E+LARGL+ Sbjct: 1 MIGVLIYPDFQLLDAAGPIAAFEIAARYAKVAPAIKVMAAEAGTVRSSSGAELLARGLRH 60 Query: 61 ATAITTLIIAGGNGVRTPATCPATLSFVRRMAGRGIRVASVCSGAYVLAEAGLLDGRRAT 120 A+ TLI+AGG GVR A C T +F++ A RG R+ASVCSGAYVLAEAGLLDGRRAT Sbjct: 61 DRAMRTLIVAGGEGVRAAAQCARTQAFLKAAAKRGCRIASVCSGAYVLAEAGLLDGRRAT 120 Query: 121 THWQRTPHFVKTYPKIKLEPDQIFVRDGNIWSSAGITAGIDLALAMITEDYGDEVAQNTA 180 THW R+ F YP+++LEPD+IFVRDG +W+SAGI+AGIDLALA+I EDY D +A++ A Sbjct: 121 THWGRSRDFRMRYPQVRLEPDRIFVRDGEVWTSAGISAGIDLALAIIAEDYSDAIARDVA 180 Query: 181 RQLVLYHRRSGGQSQFSSLLELKTPNGRFGPLLAWAREHLDAPLTVEDLADKAGMSSRHF 240 RQLV+ RR+GGQSQFSSL+EL+ P+GRF LL+W REHL PLTVE LA++AGMS+RHF Sbjct: 181 RQLVVAQRRAGGQSQFSSLVELQAPSGRFAALLSWMREHLGTPLTVEQLAEQAGMSTRHF 240 Query: 241 TRAFIAETGTTPSKAVERLRIEVARQRVQSSGEAIERVAEITGFRDPERMRRAFIRAFGQ 300 RAF ETGTTPSKAVERLR+EVAR RVQ+SGEAIE VA+ TGF DPERMRRAFIRAFG Sbjct: 241 ARAFRDETGTTPSKAVERLRLEVARSRVQASGEAIELVAQATGFGDPERMRRAFIRAFGH 300 Query: 301 PPQSLRRAARA 311 PPQ+LRRAA+A Sbjct: 301 PPQALRRAAKA 311