BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0055.0003.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_578594.1| hypothetical protein Nham_3404 [Nitrobacter ham... 660 0.0 ref|YP_317553.1| hypothetical protein Nwi_0939 [Nitrobacter wino... 654 0.0 ref|YP_004109393.1| hypothetical protein Rpdx1_3079 [Rhodopseudo... 609 e-172 ref|YP_001991692.1| hypothetical protein Rpal_2708 [Rhodopseudom... 608 e-172 ref|NP_947772.1| hypothetical protein RPA2430 [Rhodopseudomonas ... 606 e-171 >ref|YP_578594.1| hypothetical protein Nham_3404 [Nitrobacter hamburgensis X14] gb|ABE64134.1| sodium/proton antiporter, NhaD family [Nitrobacter hamburgensis X14] Length = 406 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/404 (83%), Positives = 370/404 (91%), Gaps = 1/404 (0%) Query: 4 PILVYGIPLDFILFALTLLGVAIFHHHTLAVALTGLAAIVAYKLLFAGFAKFGAGLPGLA 63 PIL+ GIPLDFILF L G+A+FH HTLA+AL GLA I++YK+ F GF KFG G+ GL Sbjct: 4 PILILGIPLDFILFGFILFGIALFHRHTLAIALIGLAVIISYKIGFTGF-KFGMGVAGLG 62 Query: 64 HHMEHEWVTLANLFLLLMGFALLSRHFEESRIPDEMPALLPDDWKGGLILLVIVFVLSGF 123 HHMEHEWVTLANLFLLLMGFALLSRHFEESRIPDE+PALLPDDWKGG +LLVIVFVLS F Sbjct: 63 HHMEHEWVTLANLFLLLMGFALLSRHFEESRIPDEVPALLPDDWKGGAVLLVIVFVLSSF 122 Query: 124 LDNIAAALIGGTVARHVFRGRVHIGYLAAIVAASNAGGAGSVVGDTTTTMMWIDGISPLT 183 LDNIA ALIGGTVARHVFRG+VHIGYLAAIVAASNAGGAGSVVGDTTTTMMWIDGISPL+ Sbjct: 123 LDNIAGALIGGTVARHVFRGKVHIGYLAAIVAASNAGGAGSVVGDTTTTMMWIDGISPLS 182 Query: 184 VVEAYVAAIVAMLVFAVPASLQQHRFSPIVKDAPSGLRIDWARVAIVAVILLAALTANVT 243 V+EAYVAAIVA+++FAVPA+++QHR SP+VK+A SGLR+D ARV IVA IL+AAL ANVT Sbjct: 183 VLEAYVAAIVALVIFAVPAAMRQHRLSPVVKNATSGLRVDGARVFIVAAILIAALVANVT 242 Query: 244 ANLKFPALLDTLPVLGLAVWAAILVTSVLRRPDWSVMPETLKGTVFLLALVTAASMMPVE 303 ANLKFPALLDTLPVLGLAVWAAIL+T+ LR PDW VMPET KGT+FLLALVTAASMMPVE Sbjct: 243 ANLKFPALLDTLPVLGLAVWAAILLTAFLRAPDWKVMPETFKGTIFLLALVTAASMMPVE 302 Query: 304 KLPAASWQTALGLGFVSAVFDNIPLTALALKQGGYDWGFLAYAVGFGGSMVWFGSSAGVA 363 KLPAASW TALGLGFVS+VFDNIPLTALALKQGGYDWGFLAYAVGFGGSMVWFGSSAGVA Sbjct: 303 KLPAASWPTALGLGFVSSVFDNIPLTALALKQGGYDWGFLAYAVGFGGSMVWFGSSAGVA 362 Query: 364 VSNMYPEAKSVVRWITQGWPIMAAYVVGFFVMLALLGWHPDAPH 407 +SNMYPEAKSV W+ GWPI AYVVGFFVMLA++GWHPDAPH Sbjct: 363 LSNMYPEAKSVGSWVRNGWPIAVAYVVGFFVMLAVVGWHPDAPH 406 >ref|YP_317553.1| hypothetical protein Nwi_0939 [Nitrobacter winogradskyi Nb-255] gb|ABA04201.1| sodium/proton antiporter, NhaD family [Nitrobacter winogradskyi Nb-255] Length = 406 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/404 (83%), Positives = 366/404 (90%), Gaps = 1/404 (0%) Query: 4 PILVYGIPLDFILFALTLLGVAIFHHHTLAVALTGLAAIVAYKLLFAGFAKFGAGLPGLA 63 PIL+ G+PLDFI FA LLG+A+FH HTL +ALTGLA I+AYK F GF K GAGL G A Sbjct: 4 PILIVGVPLDFIFFAFILLGIALFHRHTLPIALTGLAVIIAYKTGFTGF-KSGAGLNGFA 62 Query: 64 HHMEHEWVTLANLFLLLMGFALLSRHFEESRIPDEMPALLPDDWKGGLILLVIVFVLSGF 123 HHM HEWVTLANLFLLLMGFALLSRHFEESRIPD MPALLPDDWKGG++LLVIVF+LS F Sbjct: 63 HHMAHEWVTLANLFLLLMGFALLSRHFEESRIPDAMPALLPDDWKGGVVLLVIVFILSSF 122 Query: 124 LDNIAAALIGGTVARHVFRGRVHIGYLAAIVAASNAGGAGSVVGDTTTTMMWIDGISPLT 183 LDNIA ALIGGTVARHVFRG+VHIGYLAAIVAASNAGGAGSVVGDTTTTMMWIDG+SPL+ Sbjct: 123 LDNIAGALIGGTVARHVFRGKVHIGYLAAIVAASNAGGAGSVVGDTTTTMMWIDGVSPLS 182 Query: 184 VVEAYVAAIVAMLVFAVPASLQQHRFSPIVKDAPSGLRIDWARVAIVAVILLAALTANVT 243 V+EAY+AAIVA+ +FAVPA+++QHRFSPIVKD G+R+D ARV +VAVIL+AAL ANVT Sbjct: 183 VLEAYIAAIVALAIFAVPAAMRQHRFSPIVKDPRRGVRVDGARVFVVAVILIAALAANVT 242 Query: 244 ANLKFPALLDTLPVLGLAVWAAILVTSVLRRPDWSVMPETLKGTVFLLALVTAASMMPVE 303 ANLKFPALLDTLPVLGLAVWAAIL+T+ LRRPDW VMPET KGTVFLLALVTAASMMPVE Sbjct: 243 ANLKFPALLDTLPVLGLAVWAAILLTAFLRRPDWKVMPETFKGTVFLLALVTAASMMPVE 302 Query: 304 KLPAASWQTALGLGFVSAVFDNIPLTALALKQGGYDWGFLAYAVGFGGSMVWFGSSAGVA 363 LPAASWQT LGLGFVS+VFDNIPLT LALKQGGYDWGFLAYAVGFGGSM+WFGSSAGVA Sbjct: 303 TLPAASWQTTLGLGFVSSVFDNIPLTELALKQGGYDWGFLAYAVGFGGSMIWFGSSAGVA 362 Query: 364 VSNMYPEAKSVVRWITQGWPIMAAYVVGFFVMLALLGWHPDAPH 407 +SNMYPEAKSV W+ GW I AYVVGFFVMLA+LGWHPDAPH Sbjct: 363 LSNMYPEAKSVGLWVRNGWTIAVAYVVGFFVMLAILGWHPDAPH 406 >ref|YP_004109393.1| hypothetical protein Rpdx1_3079 [Rhodopseudomonas palustris DX-1] gb|ADU44660.1| hypothetical protein Rpdx1_3079 [Rhodopseudomonas palustris DX-1] Length = 405 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 313/406 (77%), Positives = 352/406 (86%), Gaps = 1/406 (0%) Query: 2 LTPILVYGIPLDFILFALTLLGVAIFHHHTLAVALTGLAAIVAYKLLFAGFAKFGAGLPG 61 +TPIL++GIPLDF+LFA TL+GVAIFH HTL +AL GL +V YKL FAGF K G GL G Sbjct: 1 MTPILIFGIPLDFVLFAATLVGVAIFHRHTLLIALAGLTTVVGYKLAFAGF-KTGVGLSG 59 Query: 62 LAHHMEHEWVTLANLFLLLMGFALLSRHFEESRIPDEMPALLPDDWKGGLILLVIVFVLS 121 LA HM+HEWVTLANLFLLLMGFALLS HFE+S IPDEMPALLPDDWKG ++LL +VFVLS Sbjct: 60 LALHMQHEWVTLANLFLLLMGFALLSAHFEKSGIPDEMPALLPDDWKGPVVLLGLVFVLS 119 Query: 122 GFLDNIAAALIGGTVARHVFRGRVHIGYLAAIVAASNAGGAGSVVGDTTTTMMWIDGISP 181 FLDNIAAALIGG VARHVFRGRVHIGYLAAIVAASNAGG+GSVVGDTTTTMMWI GISP Sbjct: 120 SFLDNIAAALIGGMVARHVFRGRVHIGYLAAIVAASNAGGSGSVVGDTTTTMMWIAGISP 179 Query: 182 LTVVEAYVAAIVAMLVFAVPASLQQHRFSPIVKDAPSGLRIDWARVAIVAVILLAALTAN 241 L V++AYVAA +A+ +FAVPAS+QQ R+SPIVK+AP GL+I+W RV IVA IL+AALTAN Sbjct: 180 LEVLDAYVAAGIALALFAVPASIQQQRYSPIVKNAPKGLQIEWVRVGIVATILIAALTAN 239 Query: 242 VTANLKFPALLDTLPVLGLAVWAAILVTSVLRRPDWSVMPETLKGTVFLLALVTAASMMP 301 +TAN+KFPALLD PVLGL VWA IL+ + LRRPDW +MP T KGT+FLLALVT AS+MP Sbjct: 240 ITANIKFPALLDHAPVLGLTVWAVILLAAPLRRPDWELMPATFKGTIFLLALVTTASLMP 299 Query: 302 VEKLPAASWQTALGLGFVSAVFDNIPLTALALKQGGYDWGFLAYAVGFGGSMVWFGSSAG 361 VE+LP ASWQTALGLGFVSA FDNIPLTALALKQGGYDWGFLAYAVGFGGSM+WFGSSAG Sbjct: 300 VEELPGASWQTALGLGFVSAGFDNIPLTALALKQGGYDWGFLAYAVGFGGSMMWFGSSAG 359 Query: 362 VAVSNMYPEAKSVVRWITQGWPIMAAYVVGFFVMLALLGWHPDAPH 407 VA++NM+PE KSV W+ GW + AY V FF ML L+GW PD PH Sbjct: 360 VAITNMFPEGKSVALWLRHGWHVGIAYFVAFFAMLWLIGWSPDLPH 405 >ref|YP_001991692.1| hypothetical protein Rpal_2708 [Rhodopseudomonas palustris TIE-1] gb|ACF01217.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 405 Score = 608 bits (1568), Expect = e-172, Method: Compositional matrix adjust. Identities = 317/406 (78%), Positives = 357/406 (87%), Gaps = 1/406 (0%) Query: 2 LTPILVYGIPLDFILFALTLLGVAIFHHHTLAVALTGLAAIVAYKLLFAGFAKFGAGLPG 61 +TPIL++GIPLDFILFA TL+GVAIFH HTL +AL GL +V YKL FAGF K G GL G Sbjct: 1 MTPILIFGIPLDFILFAATLVGVAIFHRHTLLIALAGLVTVVGYKLAFAGF-KTGVGLSG 59 Query: 62 LAHHMEHEWVTLANLFLLLMGFALLSRHFEESRIPDEMPALLPDDWKGGLILLVIVFVLS 121 LA HM+HEWVTLANLFLLLMGFALLS HFE+S IPDEMPALLPDDWKG ++LL +VFVLS Sbjct: 60 LALHMQHEWVTLANLFLLLMGFALLSAHFEKSGIPDEMPALLPDDWKGPVVLLGLVFVLS 119 Query: 122 GFLDNIAAALIGGTVARHVFRGRVHIGYLAAIVAASNAGGAGSVVGDTTTTMMWIDGISP 181 FLDNIAAALIGG VARHVFRGRVHIGYLAAIVAASNAGG+GSVVGDTTTTMMWI G+SP Sbjct: 120 SFLDNIAAALIGGMVARHVFRGRVHIGYLAAIVAASNAGGSGSVVGDTTTTMMWIAGVSP 179 Query: 182 LTVVEAYVAAIVAMLVFAVPASLQQHRFSPIVKDAPSGLRIDWARVAIVAVILLAALTAN 241 L+V+EAYVAA++A+ +FAVPAS+QQ +FSPIVK+AP GL+I+W RV IVA IL+AAL AN Sbjct: 180 LSVLEAYVAAVIALALFAVPASIQQQKFSPIVKNAPKGLQIEWVRVGIVAAILIAALAAN 239 Query: 242 VTANLKFPALLDTLPVLGLAVWAAILVTSVLRRPDWSVMPETLKGTVFLLALVTAASMMP 301 VTAN+KFPALLD PVLGL VWA IL+T+ LRRPDW +MP T KGT+FLLALVTAAS+MP Sbjct: 240 VTANMKFPALLDHAPVLGLTVWAVILITAPLRRPDWELMPATFKGTIFLLALVTAASLMP 299 Query: 302 VEKLPAASWQTALGLGFVSAVFDNIPLTALALKQGGYDWGFLAYAVGFGGSMVWFGSSAG 361 VE+LPAASWQTALGLGFVSA FDNIPLTALALKQGGYDWGFLAYAVGFGGSM+WFGSSAG Sbjct: 300 VEELPAASWQTALGLGFVSAGFDNIPLTALALKQGGYDWGFLAYAVGFGGSMMWFGSSAG 359 Query: 362 VAVSNMYPEAKSVVRWITQGWPIMAAYVVGFFVMLALLGWHPDAPH 407 VA++NM+PE KSVV W+ GW + AY + FF ML L+GWHPD P Sbjct: 360 VAITNMFPEGKSVVMWLRHGWHVGVAYFIAFFAMLLLVGWHPDLPR 405 >ref|NP_947772.1| hypothetical protein RPA2430 [Rhodopseudomonas palustris CGA009] emb|CAE27871.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 475 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 317/406 (78%), Positives = 356/406 (87%), Gaps = 1/406 (0%) Query: 2 LTPILVYGIPLDFILFALTLLGVAIFHHHTLAVALTGLAAIVAYKLLFAGFAKFGAGLPG 61 +TPIL+ GIPLDFILFA TL+GVAIFH HTL +AL GL +V YKL FAGF K G GL G Sbjct: 71 VTPILILGIPLDFILFAATLVGVAIFHRHTLLIALAGLVTVVGYKLAFAGF-KTGVGLSG 129 Query: 62 LAHHMEHEWVTLANLFLLLMGFALLSRHFEESRIPDEMPALLPDDWKGGLILLVIVFVLS 121 LA HM+HEWVTLANLFLLLMGFALLS HFE+S IPDEMPALLPDDWKG ++LL +VFVLS Sbjct: 130 LALHMQHEWVTLANLFLLLMGFALLSAHFEKSGIPDEMPALLPDDWKGPVVLLGLVFVLS 189 Query: 122 GFLDNIAAALIGGTVARHVFRGRVHIGYLAAIVAASNAGGAGSVVGDTTTTMMWIDGISP 181 FLDNIAAALIGG VARHVFRGRVHIGYLAAIVAASNAGG+GSVVGDTTTTMMWI G+SP Sbjct: 190 SFLDNIAAALIGGMVARHVFRGRVHIGYLAAIVAASNAGGSGSVVGDTTTTMMWIAGVSP 249 Query: 182 LTVVEAYVAAIVAMLVFAVPASLQQHRFSPIVKDAPSGLRIDWARVAIVAVILLAALTAN 241 L+V+EAYVAA++A+ +FAVPAS+QQ +FSPIVK+AP GL+I+W RV IVA IL+AAL AN Sbjct: 250 LSVLEAYVAAVIALALFAVPASIQQQKFSPIVKNAPKGLQIEWVRVGIVAAILIAALAAN 309 Query: 242 VTANLKFPALLDTLPVLGLAVWAAILVTSVLRRPDWSVMPETLKGTVFLLALVTAASMMP 301 VTAN+KFPALLD PVLGL VWA IL+T+ LRRPDW +MP T KGT+FLLALVTAAS+MP Sbjct: 310 VTANMKFPALLDHAPVLGLTVWAVILITAPLRRPDWELMPATFKGTIFLLALVTAASLMP 369 Query: 302 VEKLPAASWQTALGLGFVSAVFDNIPLTALALKQGGYDWGFLAYAVGFGGSMVWFGSSAG 361 VE+LPAASWQTALGLGFVSA FDNIPLTALALKQGGYDWGFLAYAVGFGGSM+WFGSSAG Sbjct: 370 VEELPAASWQTALGLGFVSAGFDNIPLTALALKQGGYDWGFLAYAVGFGGSMMWFGSSAG 429 Query: 362 VAVSNMYPEAKSVVRWITQGWPIMAAYVVGFFVMLALLGWHPDAPH 407 VA++NM+PE KSVV W+ GW + AY + FF ML L+GWHPD P Sbjct: 430 VAITNMFPEGKSVVMWLRHGWHVGVAYFIAFFAMLLLVGWHPDLPR 475