BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0027.p (434 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202275.1| translation initiation factor IF-2 [Bradyrhi... 735 0.0 ref|YP_001236266.1| translation initiation factor IF-2 [Bradyrhi... 729 0.0 ref|NP_767423.1| translation initiation factor IF-2 [Bradyrhizob... 722 0.0 ref|YP_530374.1| translation initiation factor IF-2 [Rhodopseudo... 700 0.0 ref|YP_779136.1| translation initiation factor IF-2 [Rhodopseudo... 700 0.0 >ref|YP_001202275.1| translation initiation factor IF-2 [Bradyrhizobium sp. ORS 278] sp|A4YJE9.1|IF2_BRASO RecName: Full=Translation initiation factor IF-2 emb|CAL74025.1| Translation initiation factor IF-2 [Bradyrhizobium sp. ORS 278] Length = 921 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/388 (94%), Positives = 376/388 (96%) Query: 2 RRPGGAVRPVAAPKTTHKPGPQKQRGRLTVVTALNADDVRERSIASFRRRTQRLKGHAAN 61 R PGGA RP PKTTHKPGPQKQRGRLTVVTALNADDVRERSIASFRRRTQRLKGHAAN Sbjct: 269 RGPGGAARPAPPPKTTHKPGPQKQRGRLTVVTALNADDVRERSIASFRRRTQRLKGHAAN 328 Query: 62 EQKEKLIREVVIPEVIAIQELANRMSERAVDVIRMLMKQGAMHKITDVIDADTAQLIAEE 121 EQKEKL+REV IPE I IQELANRMSERAVDVIR+LM+QGAMHKITDVIDADTAQLIAEE Sbjct: 329 EQKEKLVREVTIPEAITIQELANRMSERAVDVIRLLMRQGAMHKITDVIDADTAQLIAEE 388 Query: 122 LGHTVKRVAASDVEEGLFDVVDDSTDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSGE 181 LGHTVKRVAASDVEEGLFDVVDDSTDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSGE Sbjct: 389 LGHTVKRVAASDVEEGLFDVVDDSTDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSGE 448 Query: 182 AGGITQHIGAYQVLSPESGTKITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ 241 AGGITQHIGAYQV +P+SG KITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ Sbjct: 449 AGGITQHIGAYQVTAPDSGKKITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ 508 Query: 242 TIEAINHAKAAKVPMIVAINKIDKPDARPERVRTELLQHEVQVESLGGDVVDVEVSAKNK 301 TIEAINHAKAAKVPMIVAINKIDKPDARPERVRTELLQHEVQVESLGGDVVDVEVSAKNK Sbjct: 509 TIEAINHAKAAKVPMIVAINKIDKPDARPERVRTELLQHEVQVESLGGDVVDVEVSAKNK 568 Query: 302 TNLDRLLEMIALQAEILDLKTNSQRPAEGTVIEAKLDRGRGPVATVLVQRGTLRIGDIIV 361 TNLDRLLEMIALQA+ILDLKTNS RPAEGTVIEAKLDRGRGPVATVLVQRGTLR+GDIIV Sbjct: 569 TNLDRLLEMIALQADILDLKTNSDRPAEGTVIEAKLDRGRGPVATVLVQRGTLRVGDIIV 628 Query: 362 AGAEMGRVRALISDQGENLEEAGPSVPV 389 AGAEMGRVRALISDQGE L+EAGPSVPV Sbjct: 629 AGAEMGRVRALISDQGETLQEAGPSVPV 656 >ref|YP_001236266.1| translation initiation factor IF-2 [Bradyrhizobium sp. BTAi1] sp|A5E866.1|IF2_BRASB RecName: Full=Translation initiation factor IF-2 gb|ABQ32360.1| bacterial translation initiation factor 2 (bIF-2) [Bradyrhizobium sp. BTAi1] Length = 921 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/388 (93%), Positives = 375/388 (96%) Query: 2 RRPGGAVRPVAAPKTTHKPGPQKQRGRLTVVTALNADDVRERSIASFRRRTQRLKGHAAN 61 R PGGA RP PKTTHKPGPQKQRGRLTVVTAL ADDVRERSIASFRRRTQRLKGHAAN Sbjct: 269 RGPGGAARPAPPPKTTHKPGPQKQRGRLTVVTALTADDVRERSIASFRRRTQRLKGHAAN 328 Query: 62 EQKEKLIREVVIPEVIAIQELANRMSERAVDVIRMLMKQGAMHKITDVIDADTAQLIAEE 121 EQKEKL+REV IPE I IQELANRMSERAVDVIR+LM+QGAMHKITDVIDADTAQLIAEE Sbjct: 329 EQKEKLVREVTIPEAITIQELANRMSERAVDVIRLLMRQGAMHKITDVIDADTAQLIAEE 388 Query: 122 LGHTVKRVAASDVEEGLFDVVDDSTDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSGE 181 LGH+VKRVAASDVEEGLFDVVDDSTDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSGE Sbjct: 389 LGHSVKRVAASDVEEGLFDVVDDSTDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSGE 448 Query: 182 AGGITQHIGAYQVLSPESGTKITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ 241 AGGITQHIGAYQV +P+SG KITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ Sbjct: 449 AGGITQHIGAYQVTAPDSGKKITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ 508 Query: 242 TIEAINHAKAAKVPMIVAINKIDKPDARPERVRTELLQHEVQVESLGGDVVDVEVSAKNK 301 TIEAINHAKAAKVPMIVAINKIDKPDARP+RVRTELLQHEVQVESLGG+VVDVEVSAKNK Sbjct: 509 TIEAINHAKAAKVPMIVAINKIDKPDARPDRVRTELLQHEVQVESLGGEVVDVEVSAKNK 568 Query: 302 TNLDRLLEMIALQAEILDLKTNSQRPAEGTVIEAKLDRGRGPVATVLVQRGTLRIGDIIV 361 TNLDRLLEMIALQA+ILDLKTNS RPAEGTVIEAKLDRGRGPVATVLVQRGTLR+GDIIV Sbjct: 569 TNLDRLLEMIALQADILDLKTNSDRPAEGTVIEAKLDRGRGPVATVLVQRGTLRVGDIIV 628 Query: 362 AGAEMGRVRALISDQGENLEEAGPSVPV 389 AGAEMGRVRALISDQGE L+EAGPSVPV Sbjct: 629 AGAEMGRVRALISDQGETLQEAGPSVPV 656 >ref|NP_767423.1| translation initiation factor IF-2 [Bradyrhizobium japonicum USDA 110] sp|Q89WA9.1|IF2_BRAJA RecName: Full=Translation initiation factor IF-2 dbj|BAC46048.1| translation initiation factor IF-2 [Bradyrhizobium japonicum USDA 110] Length = 902 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/388 (92%), Positives = 375/388 (96%) Query: 2 RRPGGAVRPVAAPKTTHKPGPQKQRGRLTVVTALNADDVRERSIASFRRRTQRLKGHAAN 61 R PGGA RP PKTTHKPGPQK+RGRLTVVTALNAD+VRERSIASFRRRTQRLKGHA+N Sbjct: 250 RGPGGAARPAPPPKTTHKPGPQKERGRLTVVTALNADEVRERSIASFRRRTQRLKGHASN 309 Query: 62 EQKEKLIREVVIPEVIAIQELANRMSERAVDVIRMLMKQGAMHKITDVIDADTAQLIAEE 121 E KEKLIREV+IPE I IQELANRM+ERAVDVIRMLMKQGAMHKITDVIDADTAQLIAEE Sbjct: 310 EPKEKLIREVIIPEAITIQELANRMAERAVDVIRMLMKQGAMHKITDVIDADTAQLIAEE 369 Query: 122 LGHTVKRVAASDVEEGLFDVVDDSTDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSGE 181 LGHTVKRVAASDVEEGLFD VDDSTDTE RSPVVTVMGHVDHGKTSLLDALRHANVVSGE Sbjct: 370 LGHTVKRVAASDVEEGLFDQVDDSTDTETRSPVVTVMGHVDHGKTSLLDALRHANVVSGE 429 Query: 182 AGGITQHIGAYQVLSPESGTKITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ 241 AGGITQHIGAYQV+SPESG KITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ Sbjct: 430 AGGITQHIGAYQVVSPESGKKITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ 489 Query: 242 TIEAINHAKAAKVPMIVAINKIDKPDARPERVRTELLQHEVQVESLGGDVVDVEVSAKNK 301 T+EAINHAKAA+VP+IVAINKIDKPDA+PERVRTELLQHEVQVES GGDVVDVEVSAKNK Sbjct: 490 TVEAINHAKAARVPIIVAINKIDKPDAKPERVRTELLQHEVQVESFGGDVVDVEVSAKNK 549 Query: 302 TNLDRLLEMIALQAEILDLKTNSQRPAEGTVIEAKLDRGRGPVATVLVQRGTLRIGDIIV 361 TNLD+LLEMIALQA+ILDLKTNS+RPAEGTVIEAKLDRGRGPVATVLVQRGTLR+GDIIV Sbjct: 550 TNLDKLLEMIALQADILDLKTNSERPAEGTVIEAKLDRGRGPVATVLVQRGTLRVGDIIV 609 Query: 362 AGAEMGRVRALISDQGENLEEAGPSVPV 389 AGAEMGRVRALISDQGE ++EAGPSVPV Sbjct: 610 AGAEMGRVRALISDQGETVQEAGPSVPV 637 >ref|YP_530374.1| translation initiation factor IF-2 [Rhodopseudomonas palustris BisB18] sp|Q21C31.1|IF2_RHOPB RecName: Full=Translation initiation factor IF-2 gb|ABD86055.1| bacterial translation initiation factor 2 (bIF-2) [Rhodopseudomonas palustris BisB18] Length = 880 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/388 (90%), Positives = 368/388 (94%) Query: 2 RRPGGAVRPVAAPKTTHKPGPQKQRGRLTVVTALNADDVRERSIASFRRRTQRLKGHAAN 61 R PGGA RPV APK T KP P KQRGRLT+VTAL+ADDVRERSIASFRRRTQRLKGH +N Sbjct: 228 RGPGGAARPVVAPKPTAKPAPAKQRGRLTLVTALSADDVRERSIASFRRRTQRLKGHQSN 287 Query: 62 EQKEKLIREVVIPEVIAIQELANRMSERAVDVIRMLMKQGAMHKITDVIDADTAQLIAEE 121 E KEKL+REV+IPE I IQELANRM+ERAVDVIRMLMKQG M KITDVIDADTAQLIAEE Sbjct: 288 EPKEKLVREVIIPEAITIQELANRMAERAVDVIRMLMKQGQMVKITDVIDADTAQLIAEE 347 Query: 122 LGHTVKRVAASDVEEGLFDVVDDSTDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSGE 181 LGH+VKRVAASDVEEGLFD+VDD+TDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSGE Sbjct: 348 LGHSVKRVAASDVEEGLFDIVDDATDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSGE 407 Query: 182 AGGITQHIGAYQVLSPESGTKITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ 241 AGGITQHIGAYQV SPESG KITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ Sbjct: 408 AGGITQHIGAYQVTSPESGKKITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQ 467 Query: 242 TIEAINHAKAAKVPMIVAINKIDKPDARPERVRTELLQHEVQVESLGGDVVDVEVSAKNK 301 TIEAINHAKAAKVP+IVAINKIDK DA+PERVRTELLQ+ +QVESLGGDVVDVEVSAKNK Sbjct: 468 TIEAINHAKAAKVPVIVAINKIDKQDAKPERVRTELLQYGIQVESLGGDVVDVEVSAKNK 527 Query: 302 TNLDRLLEMIALQAEILDLKTNSQRPAEGTVIEAKLDRGRGPVATVLVQRGTLRIGDIIV 361 TNLD+LLEMIALQAE+LDLKTN++RPAEGTVIEAKLDRGRGPVATVLVQRGTLR+GDIIV Sbjct: 528 TNLDKLLEMIALQAELLDLKTNTERPAEGTVIEAKLDRGRGPVATVLVQRGTLRVGDIIV 587 Query: 362 AGAEMGRVRALISDQGENLEEAGPSVPV 389 AGAEMGRVRALISDQG L EAGPSVPV Sbjct: 588 AGAEMGRVRALISDQGVTLTEAGPSVPV 615 >ref|YP_779136.1| translation initiation factor IF-2 [Rhodopseudomonas palustris BisA53] sp|Q07V78.1|IF2_RHOP5 RecName: Full=Translation initiation factor IF-2 gb|ABJ04156.1| bacterial translation initiation factor 2 (bIF-2) [Rhodopseudomonas palustris BisA53] Length = 893 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/389 (89%), Positives = 366/389 (94%), Gaps = 1/389 (0%) Query: 2 RRPGGAVRPVAAPKT-THKPGPQKQRGRLTVVTALNADDVRERSIASFRRRTQRLKGHAA 60 R PGGA RPV PK KP P KQRGRLT+VTAL ADDVRERSIASFRRRTQRLKGHA+ Sbjct: 240 RGPGGAARPVIPPKQPAAKPAPSKQRGRLTLVTALTADDVRERSIASFRRRTQRLKGHAS 299 Query: 61 NEQKEKLIREVVIPEVIAIQELANRMSERAVDVIRMLMKQGAMHKITDVIDADTAQLIAE 120 NE KEKL+REV++PE I IQELANRMSERAVDVIRMLMKQGAMHKI DVIDADTAQLIAE Sbjct: 300 NEPKEKLVREVIVPEAITIQELANRMSERAVDVIRMLMKQGAMHKINDVIDADTAQLIAE 359 Query: 121 ELGHTVKRVAASDVEEGLFDVVDDSTDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSG 180 ELGHTVKRVAASDVEEGLFDVVD+STDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSG Sbjct: 360 ELGHTVKRVAASDVEEGLFDVVDNSTDTEPRSPVVTVMGHVDHGKTSLLDALRHANVVSG 419 Query: 181 EAGGITQHIGAYQVLSPESGTKITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMP 240 EAGGITQHIGAYQV SPESG KITFIDTPGHAAFTAMRARGAKVTDIV+LVVAADDGVMP Sbjct: 420 EAGGITQHIGAYQVTSPESGKKITFIDTPGHAAFTAMRARGAKVTDIVILVVAADDGVMP 479 Query: 241 QTIEAINHAKAAKVPMIVAINKIDKPDARPERVRTELLQHEVQVESLGGDVVDVEVSAKN 300 QT+EAINHAKAA VP+IVAINKIDKPDA+PERVRTELLQ+ VQVESLGGD VDVEVSAKN Sbjct: 480 QTVEAINHAKAAGVPIIVAINKIDKPDAKPERVRTELLQYNVQVESLGGDTVDVEVSAKN 539 Query: 301 KTNLDRLLEMIALQAEILDLKTNSQRPAEGTVIEAKLDRGRGPVATVLVQRGTLRIGDII 360 KTNLD+LLEMIALQAE+LDLKTN QRPAEGTVIEAKLDRGRGPVATVLVQRGTL++GDII Sbjct: 540 KTNLDKLLEMIALQAELLDLKTNEQRPAEGTVIEAKLDRGRGPVATVLVQRGTLKVGDII 599 Query: 361 VAGAEMGRVRALISDQGENLEEAGPSVPV 389 VAGAEMGRVRALISDQG+ +E AGPSVPV Sbjct: 600 VAGAEMGRVRALISDQGDTVESAGPSVPV 628