BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0054.0025.p         (136 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001236267.1| ribosome-binding factor A [Bradyrhizobium sp...   238   2e-61
ref|YP_001202276.1| ribosome-binding factor A [Bradyrhizobium sp...   234   3e-60
ref|NP_767422.1| ribosome-binding factor A [Bradyrhizobium japon...   231   3e-59
ref|YP_575394.1| ribosome-binding factor A [Nitrobacter hamburge...   226   6e-58
ref|ZP_08628059.1| Ribosome-binding factor A [Bradyrhizobiaceae ...   225   2e-57

>ref|YP_001236267.1| ribosome-binding factor A [Bradyrhizobium sp. BTAi1]
 sp|A5E867.1|RBFA_BRASB RecName: Full=Ribosome-binding factor A
 gb|ABQ32361.1| ribosome-binding factor A [Bradyrhizobium sp. BTAi1]
          Length = 138

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 126/137 (91%), Gaps = 2/137 (1%)

Query: 1   MPR--QKKSSSPGGSQRQLRVGETVRHAVADILSQGDVHDPDLEGHIITVPEVRMSPDLK 58
           MPR  Q+ S++ GGSQRQLRV ETVRHAVADILSQG  HDPDLEGHIITVPEVRMSPDLK
Sbjct: 1   MPRHHQRGSTASGGSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLK 60

Query: 59  LATIYVMPLGGRDTDTVISALERNKKFLRGEIAHRVNLKFAPDIRFRVDERFDEAERIEK 118
           LATIY+MPLGGRDT+ V++ALERNKKFLRGEIAHRVNLKFAPDIRFR DERFDEAERIEK
Sbjct: 61  LATIYIMPLGGRDTEIVLAALERNKKFLRGEIAHRVNLKFAPDIRFRADERFDEAERIEK 120

Query: 119 LLRTPAVQRDLAPDSDD 135
           LLRTPAVQRDL  DS++
Sbjct: 121 LLRTPAVQRDLNSDSEE 137


>ref|YP_001202276.1| ribosome-binding factor A [Bradyrhizobium sp. ORS 278]
 sp|A4YJF0.1|RBFA_BRASO RecName: Full=Ribosome-binding factor A
 emb|CAL74026.1| Ribosome-binding factor A [Bradyrhizobium sp. ORS 278]
          Length = 138

 Score =  234 bits (597), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/134 (86%), Positives = 123/134 (91%), Gaps = 2/134 (1%)

Query: 1   MPR--QKKSSSPGGSQRQLRVGETVRHAVADILSQGDVHDPDLEGHIITVPEVRMSPDLK 58
           MPR  Q+ S++ GGSQRQLRV ETVRHAVADILSQG  HDPDLEGHIITVPEVRMSPDLK
Sbjct: 1   MPRHHQRGSAASGGSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLK 60

Query: 59  LATIYVMPLGGRDTDTVISALERNKKFLRGEIAHRVNLKFAPDIRFRVDERFDEAERIEK 118
           LATIY+MPLGGRDTD V++ALERNKKFLRGE+A RVNLKFAPDIRFRVDERFDEAERIEK
Sbjct: 61  LATIYIMPLGGRDTDVVLAALERNKKFLRGEVARRVNLKFAPDIRFRVDERFDEAERIEK 120

Query: 119 LLRTPAVQRDLAPD 132
           LLRTPAVQRDL  D
Sbjct: 121 LLRTPAVQRDLNSD 134


>ref|NP_767422.1| ribosome-binding factor A [Bradyrhizobium japonicum USDA 110]
 sp|Q89WB0.1|RBFA_BRAJA RecName: Full=Ribosome-binding factor A
 dbj|BAC46047.1| ribosome-binding factor A [Bradyrhizobium japonicum USDA 110]
          Length = 144

 Score =  231 bits (589), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 119/141 (84%), Positives = 129/141 (91%), Gaps = 5/141 (3%)

Query: 1   MPR--QKKSS-SPGGSQRQLRVGETVRHAVADILSQGDVHDPDLEGHIITVPEVRMSPDL 57
           MPR  QKKSS S GGSQRQLRVGE VRHA+A+IL+QG+VHD DLEGHI+TVPEVRMSPDL
Sbjct: 1   MPRHHQKKSSASGGGSQRQLRVGEQVRHAMAEILAQGNVHDADLEGHIVTVPEVRMSPDL 60

Query: 58  KLATIYVMPLGGRDTDTVISALERNKKFLRGEIAHRVNLKFAPDIRFRVDERFDEAERIE 117
           KLATIYVMPLGGRDT+ VI+ALERNKKFLRGE+A RVNLKFAPD+RFRVDERFDEAERIE
Sbjct: 61  KLATIYVMPLGGRDTEIVIAALERNKKFLRGEVARRVNLKFAPDVRFRVDERFDEAERIE 120

Query: 118 KLLRTPAVQRDLA--PDSDDE 136
           KLLRTPAVQ+DL   PDSD E
Sbjct: 121 KLLRTPAVQKDLEQDPDSDRE 141


>ref|YP_575394.1| ribosome-binding factor A [Nitrobacter hamburgensis X14]
 sp|Q1QS63.1|RBFA_NITHX RecName: Full=Ribosome-binding factor A
 gb|ABE60934.1| ribosome-binding factor A [Nitrobacter hamburgensis X14]
          Length = 137

 Score =  226 bits (577), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 114/136 (83%), Positives = 121/136 (88%), Gaps = 1/136 (0%)

Query: 1   MPRQ-KKSSSPGGSQRQLRVGETVRHAVADILSQGDVHDPDLEGHIITVPEVRMSPDLKL 59
           MPR  KK S+ G SQRQLRV ETVRHA+ADIL+QG VHDP LEGH+ITVPEVRMS DLKL
Sbjct: 1   MPRHNKKDSTSGASQRQLRVAETVRHAIADILAQGHVHDPVLEGHLITVPEVRMSADLKL 60

Query: 60  ATIYVMPLGGRDTDTVISALERNKKFLRGEIAHRVNLKFAPDIRFRVDERFDEAERIEKL 119
           ATIYVMPLGGRDT  VI AL+ N+KFLRGEIA RVNLKFAPDIRFR DERFDEAERIEKL
Sbjct: 61  ATIYVMPLGGRDTTDVIDALDHNRKFLRGEIARRVNLKFAPDIRFRADERFDEAERIEKL 120

Query: 120 LRTPAVQRDLAPDSDD 135
           LRTPAVQRDLAPDSD+
Sbjct: 121 LRTPAVQRDLAPDSDE 136


>ref|ZP_08628059.1| Ribosome-binding factor A [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP08968.1| Ribosome-binding factor A [Bradyrhizobiaceae bacterium SG-6C]
          Length = 140

 Score =  225 bits (574), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/140 (78%), Positives = 124/140 (88%), Gaps = 4/140 (2%)

Query: 1   MPRQKKS----SSPGGSQRQLRVGETVRHAVADILSQGDVHDPDLEGHIITVPEVRMSPD 56
           MPRQ++     S+ G SQRQLRVGE VRHA++D+LSQG VHDP LEGHIITVPEVRMSPD
Sbjct: 1   MPRQQRGKSQGSASGASQRQLRVGELVRHAISDLLSQGSVHDPALEGHIITVPEVRMSPD 60

Query: 57  LKLATIYVMPLGGRDTDTVISALERNKKFLRGEIAHRVNLKFAPDIRFRVDERFDEAERI 116
           LKLAT+YVMPLGGR  + VI+AL+RNKKFLRGE+AHRVNLKFAPD+RFRVDERFDEAERI
Sbjct: 61  LKLATVYVMPLGGRGIEDVIAALDRNKKFLRGEVAHRVNLKFAPDLRFRVDERFDEAERI 120

Query: 117 EKLLRTPAVQRDLAPDSDDE 136
           EKLLRTPAVQ+DL  DSD +
Sbjct: 121 EKLLRTPAVQKDLKTDSDQD 140