BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0024.p (366 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945787.1| tRNA pseudouridine synthase B [Rhodopseudomonas... 589 e-166 ref|YP_001989474.1| tRNA pseudouridine synthase B [Rhodopseudomo... 587 e-165 ref|YP_004106563.1| tRNA pseudouridine synthase B [Rhodopseudomo... 585 e-165 ref|YP_001202277.1| tRNA pseudouridine synthase B [Bradyrhizobiu... 585 e-165 ref|YP_779134.1| tRNA pseudouridine synthase B [Rhodopseudomonas... 585 e-165 >ref|NP_945787.1| tRNA pseudouridine synthase B [Rhodopseudomonas palustris CGA009] sp|P60345.1|TRUB_RHOPA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase emb|CAE25878.1| putative tRNA pseudouridine 55 synthase [Rhodopseudomonas palustris CGA009] Length = 366 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 290/335 (86%), Positives = 308/335 (91%), Gaps = 1/335 (0%) Query: 32 RTNNDPRQ-KQGRQNQQPRRDKRDVHGWVVLDKPIGMTSTQAVAVLKRLFQAKRAGHAGT 90 R NNDPR +G N +PRRDKRDVHGWVVLDKPIGMTSTQAVAVLKRLF AKRAGHAGT Sbjct: 31 RDNNDPRNANRGGGNGKPRRDKRDVHGWVVLDKPIGMTSTQAVAVLKRLFSAKRAGHAGT 90 Query: 91 LDPLASGGLPIALGEATKTVPFVMDGRKRYRFTVCWGEERDTDDTEGRPVRTSESRPTAD 150 LDPLASGGLPIA+GEATKTVPFVMDGRKRYRFTV WGEERDTDDTEGR V TS RPTA+ Sbjct: 91 LDPLASGGLPIAMGEATKTVPFVMDGRKRYRFTVAWGEERDTDDTEGRAVATSPDRPTAE 150 Query: 151 SIRELLPRFTGVIEQIPPQYSAIKVQGERAYDLARDGETVELKPRPVEIHELTLAEHGDN 210 +IR LLPRFTGVIEQ+PPQYSA+K+QGERAYDLARDGE V L PRPVEIHELTL EHGD+ Sbjct: 151 AIRALLPRFTGVIEQVPPQYSAVKIQGERAYDLARDGEVVPLVPRPVEIHELTLVEHGDD 210 Query: 211 GQSVFEAECGKGTYVRALARDMGRILGCFGHICALRRTLVGPFTERDMIPLEQLEALCNR 270 G+SVFEAECGKGTYVRALARDMGR+LGC+GHICALRRT+VGPF E DMIPLE+L+ALC+R Sbjct: 211 GRSVFEAECGKGTYVRALARDMGRLLGCYGHICALRRTVVGPFDESDMIPLEELQALCDR 270 Query: 271 AASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPNTSGTVYVTVA 330 AASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAP+ SGTVYVTVA Sbjct: 271 AASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPHCSGTVYVTVA 330 Query: 331 GRLLALAEIGNGELIPKRVFNLNGLTAGPARNHES 365 GRLLALAE+GNGELIPKRVFNL GLTA A ES Sbjct: 331 GRLLALAEVGNGELIPKRVFNLTGLTASSAVRKES 365 >ref|YP_001989474.1| tRNA pseudouridine synthase B [Rhodopseudomonas palustris TIE-1] gb|ACE98998.1| tRNA pseudouridine synthase B [Rhodopseudomonas palustris TIE-1] Length = 366 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 289/335 (86%), Positives = 307/335 (91%), Gaps = 1/335 (0%) Query: 32 RTNNDPRQ-KQGRQNQQPRRDKRDVHGWVVLDKPIGMTSTQAVAVLKRLFQAKRAGHAGT 90 R N DPR +G N +PRRDKRDVHGWVVLDKPIGMTSTQAVAVLKRLF AKRAGHAGT Sbjct: 31 RDNKDPRNANRGGGNGKPRRDKRDVHGWVVLDKPIGMTSTQAVAVLKRLFSAKRAGHAGT 90 Query: 91 LDPLASGGLPIALGEATKTVPFVMDGRKRYRFTVCWGEERDTDDTEGRPVRTSESRPTAD 150 LDPLASGGLPIA+GEATKTVPFVMDGRKRYRFTV WGEERDTDDTEGR V TS RPTA+ Sbjct: 91 LDPLASGGLPIAMGEATKTVPFVMDGRKRYRFTVAWGEERDTDDTEGRAVATSPDRPTAE 150 Query: 151 SIRELLPRFTGVIEQIPPQYSAIKVQGERAYDLARDGETVELKPRPVEIHELTLAEHGDN 210 +IR LLPRFTGVIEQ+PPQYSA+K+QGERAYDLARDGE V L PRPVEIHELTL EHGD+ Sbjct: 151 AIRALLPRFTGVIEQVPPQYSAVKIQGERAYDLARDGEVVPLVPRPVEIHELTLVEHGDD 210 Query: 211 GQSVFEAECGKGTYVRALARDMGRILGCFGHICALRRTLVGPFTERDMIPLEQLEALCNR 270 G+SVFEAECGKGTYVRALARDMGR+LGC+GHICALRRT+VGPF E DMIPLE+L+ALC+R Sbjct: 211 GRSVFEAECGKGTYVRALARDMGRLLGCYGHICALRRTVVGPFDESDMIPLEELQALCDR 270 Query: 271 AASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPNTSGTVYVTVA 330 AASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAP+ SGTVYVTVA Sbjct: 271 AASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPHCSGTVYVTVA 330 Query: 331 GRLLALAEIGNGELIPKRVFNLNGLTAGPARNHES 365 GRLLALAE+GNGELIPKRVFNL GLTA A ES Sbjct: 331 GRLLALAEVGNGELIPKRVFNLTGLTASSAVRKES 365 >ref|YP_004106563.1| tRNA pseudouridine synthase B [Rhodopseudomonas palustris DX-1] gb|ADU41830.1| tRNA pseudouridine synthase B [Rhodopseudomonas palustris DX-1] Length = 365 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 291/347 (83%), Positives = 310/347 (89%), Gaps = 2/347 (0%) Query: 16 DAERDAFAGQRS--DDARRTNNDPRQKQGRQNQQPRRDKRDVHGWVVLDKPIGMTSTQAV 73 DA++DA A + D R NNDPR +QPRRDKRDVHGWVV+DKPIGMTSTQAV Sbjct: 14 DAQQDAAATPTAMPDRKPRDNNDPRNGGRGGGKQPRRDKRDVHGWVVMDKPIGMTSTQAV 73 Query: 74 AVLKRLFQAKRAGHAGTLDPLASGGLPIALGEATKTVPFVMDGRKRYRFTVCWGEERDTD 133 AV+KRLF AKRAGHAGTLDPLASGGLPIA+GEATKTVPFVMDGRKRYRFTV WGEERDTD Sbjct: 74 AVVKRLFSAKRAGHAGTLDPLASGGLPIAMGEATKTVPFVMDGRKRYRFTVAWGEERDTD 133 Query: 134 DTEGRPVRTSESRPTADSIRELLPRFTGVIEQIPPQYSAIKVQGERAYDLARDGETVELK 193 DTEGR V TS RPTA++I LLPRFTGVIEQIPPQYSA+K+QGERAYDLARDGE V L Sbjct: 134 DTEGRAVATSAERPTAEAIMALLPRFTGVIEQIPPQYSAVKIQGERAYDLARDGEVVPLV 193 Query: 194 PRPVEIHELTLAEHGDNGQSVFEAECGKGTYVRALARDMGRILGCFGHICALRRTLVGPF 253 RPVEIHELTL EH D GQSVFEAECGKGTYVRALARDMGR+LGC+GHICALRRTLVGPF Sbjct: 194 ARPVEIHELTLVEHHDTGQSVFEAECGKGTYVRALARDMGRLLGCYGHICALRRTLVGPF 253 Query: 254 TERDMIPLEQLEALCNRAASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLL 313 E DMIPLE+L+ALC+RAASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLL Sbjct: 254 DEADMIPLEELQALCDRAASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLL 313 Query: 314 RGRDAPNTSGTVYVTVAGRLLALAEIGNGELIPKRVFNLNGLTAGPA 360 RGRDAP+ SGTVYVTVAGRLLALAE+GNGELIPKRVFNL GLTA P+ Sbjct: 314 RGRDAPHCSGTVYVTVAGRLLALAEVGNGELIPKRVFNLTGLTASPS 360 >ref|YP_001202277.1| tRNA pseudouridine synthase B [Bradyrhizobium sp. ORS 278] emb|CAL74027.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) [Bradyrhizobium sp. ORS 278] Length = 365 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 294/341 (86%), Positives = 306/341 (89%), Gaps = 3/341 (0%) Query: 25 QRSDDAR--RTNNDPRQKQGRQNQQPRRDKRDVHGWVVLDKPIGMTSTQAVAVLKRLFQA 82 + S DAR R NNDPR KQ R NQ PRRD+RDVHGWVVLDKPIGMTSTQAVAV KRLFQA Sbjct: 24 KNSSDARPPRDNNDPRNKQQRGNQ-PRRDRRDVHGWVVLDKPIGMTSTQAVAVAKRLFQA 82 Query: 83 KRAGHAGTLDPLASGGLPIALGEATKTVPFVMDGRKRYRFTVCWGEERDTDDTEGRPVRT 142 KRAGHAGTLDPLASGGLPIALGEATKTVPFVMDGRKRYRFTV WG ERDTDDTEGR V T Sbjct: 83 KRAGHAGTLDPLASGGLPIALGEATKTVPFVMDGRKRYRFTVTWGAERDTDDTEGRVVET 142 Query: 143 SESRPTADSIRELLPRFTGVIEQIPPQYSAIKVQGERAYDLARDGETVELKPRPVEIHEL 202 SE+RP +IR LLP+FTG IEQ PP+YSAIK+QGERAYDLARDGE VEL+PRPVEIHEL Sbjct: 143 SENRPDVAAIRALLPQFTGRIEQTPPRYSAIKIQGERAYDLARDGEVVELQPRPVEIHEL 202 Query: 203 TLAEHGDNGQSVFEAECGKGTYVRALARDMGRILGCFGHICALRRTLVGPFTERDMIPLE 262 TL + D SVFEAECGKGTYVRALARDMGR+LGC+GHI ALRRTLVGPFTE DMIPLE Sbjct: 203 TLVDQPDADHSVFEAECGKGTYVRALARDMGRLLGCYGHISALRRTLVGPFTENDMIPLE 262 Query: 263 QLEALCNRAASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPNTS 322 QLEALCNRAASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAP +S Sbjct: 263 QLEALCNRAASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPQSS 322 Query: 323 GTVYVTVAGRLLALAEIGNGELIPKRVFNLNGLTAGPARNH 363 GTVYVTVAGRLLALAEIGNGELIPKRVFNL GLTA RN Sbjct: 323 GTVYVTVAGRLLALAEIGNGELIPKRVFNLTGLTASSGRNE 363 >ref|YP_779134.1| tRNA pseudouridine synthase B [Rhodopseudomonas palustris BisA53] gb|ABJ04154.1| tRNA pseudouridine synthase B [Rhodopseudomonas palustris BisA53] Length = 370 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 289/343 (84%), Positives = 310/343 (90%), Gaps = 5/343 (1%) Query: 28 DDARRTNNDPRQKQG----RQNQQPRRDKRDVHGWVVLDKPIGMTSTQAVAVLKRLFQAK 83 + A R +NDPRQKQG N QPRRDKRDVHGWVVLDKPIGMTST AVAV+KRLF AK Sbjct: 29 EQAPRGHNDPRQKQGGKGKHNNGQPRRDKRDVHGWVVLDKPIGMTSTHAVAVVKRLFSAK 88 Query: 84 RAGHAGTLDPLASGGLPIALGEATKTVPFVMDGRKRYRFTVCWGEERDTDDTEGRPVRTS 143 RAGHAGTLDPLASGGLPIA+GEATKTVPFVMDGRKRY+FTV WGEERDTDDTEGR + S Sbjct: 89 RAGHAGTLDPLASGGLPIAMGEATKTVPFVMDGRKRYQFTVAWGEERDTDDTEGRVTQAS 148 Query: 144 ESRPTADSIRELLPRFTGVIEQIPPQYSAIKVQGERAYDLARDGETVELKPRPVEIHELT 203 + RPTA++IR LLP FTGVI+Q+PPQYSAIK+ GERAYDLARDGE V L+PRPVEIHELT Sbjct: 149 DQRPTAEAIRALLPGFTGVIQQLPPQYSAIKINGERAYDLARDGEVVPLQPRPVEIHELT 208 Query: 204 LAEHGDNGQSVFEAECGKGTYVRALARDMGRILGCFGHICALRRTLVGPFTERDMIPLEQ 263 L EHG NGQSVFEAECGKGTYVR+LARDMGR+LGC+GHICALRRTLVGPF E DMIPLEQ Sbjct: 209 LVEHGANGQSVFEAECGKGTYVRSLARDMGRLLGCYGHICALRRTLVGPFDEADMIPLEQ 268 Query: 264 LEALCNRAASGEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPNTSG 323 LEALCNRAA+GEG+LADALLPVETALDDIPALAVTRADAARLHRGQAV+LRGRDAP SG Sbjct: 269 LEALCNRAAAGEGNLADALLPVETALDDIPALAVTRADAARLHRGQAVVLRGRDAPICSG 328 Query: 324 TVYVTVAGRLLALAEIGNGELIPKRVFNLNGLTAGPARNHESN 366 TVYVTVAGRLLALAE+GNGELIPKRVFNL+GLTA A ESN Sbjct: 329 TVYVTVAGRLLALAELGNGELIPKRVFNLSGLTASSA-ARESN 370