BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0054.0012.p         (176 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767407.1| hypothetical protein blr0767 [Bradyrhizobium ja...   292   1e-77
ref|YP_001202287.1| putative signal peptide [Bradyrhizobium sp. ...   279   1e-73
ref|YP_779184.1| hypothetical protein RPE_0245 [Rhodopseudomonas...   272   1e-71
ref|YP_316656.1| hypothetical protein Nwi_0036 [Nitrobacter wino...   272   1e-71
ref|YP_530247.1| hypothetical protein RPC_0353 [Rhodopseudomonas...   271   2e-71

>ref|NP_767407.1| hypothetical protein blr0767 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46032.1| blr0767 [Bradyrhizobium japonicum USDA 110]
          Length = 176

 Score =  292 bits (748), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/176 (80%), Positives = 160/176 (90%), Gaps = 1/176 (0%)

Query: 2   VAFWRFSSLVALVGSMLSASVMPGHSAKDLSP-TTSGLPIPRYVSLKSDHVNVRAGPTKD 60
           +A  RF S++ALV + LSASV P HSAKD +P + SGLP+PRYVSLKSDHVNVRAGPTKD
Sbjct: 1   MALGRFCSVMALVCTWLSASVSPSHSAKDNTPQSASGLPVPRYVSLKSDHVNVRAGPTKD 60

Query: 61  NDVAWVYTRSGLPVEITAEFENWRRVRDSEGAEGWVYHSLLSGRRTAVVTMKNKDDLASL 120
           NDVAWVYTR+GLPVEITAEFENWRRVRDSEGAEGWVYHSLLSGRRTAVVTMK+KD+LA +
Sbjct: 61  NDVAWVYTRAGLPVEITAEFENWRRVRDSEGAEGWVYHSLLSGRRTAVVTMKHKDELAPI 120

Query: 121 YDRPDATSAVAARLQAGVVAQVKKCANNWCRVTGSGFDGWIEQQRLWGVYADEKVD 176
           YDR D  SAVAA+LQAGVV QVKKC+ NWCRVTG+GFDGWI+Q+RLWGVY+DE+V+
Sbjct: 121 YDRADPDSAVAAKLQAGVVTQVKKCSANWCRVTGNGFDGWIQQERLWGVYSDEQVN 176


>ref|YP_001202287.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL74037.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 173

 Score =  279 bits (713), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/175 (77%), Positives = 152/175 (86%), Gaps = 2/175 (1%)

Query: 2   VAFWRFSSLVALVGSMLSASVMPGHSAKDLSPTTSGLPIPRYVSLKSDHVNVRAGPTKDN 61
           +A  RF ++  LV  +L   ++   +AKD   TTSGLP+PRYVSLKSDHVNVRAGPTKDN
Sbjct: 1   MALGRFGAVAVLVVCLLD--MIGSAAAKDSVLTTSGLPVPRYVSLKSDHVNVRAGPTKDN 58

Query: 62  DVAWVYTRSGLPVEITAEFENWRRVRDSEGAEGWVYHSLLSGRRTAVVTMKNKDDLASLY 121
           DVAWVYTRSGLPVEITAE+ENWRRVRDSEG+EGWVYHSLLSGRRTAVVTMKNKDDLA +Y
Sbjct: 59  DVAWVYTRSGLPVEITAEYENWRRVRDSEGSEGWVYHSLLSGRRTAVVTMKNKDDLAPIY 118

Query: 122 DRPDATSAVAARLQAGVVAQVKKCANNWCRVTGSGFDGWIEQQRLWGVYADEKVD 176
           +  DATSAV ARLQAGVVAQVKKC N WCRV G+GF+GWI+QQRLWGVYADE+V+
Sbjct: 119 ESADATSAVTARLQAGVVAQVKKCGNGWCRVLGNGFEGWIQQQRLWGVYADEQVN 173


>ref|YP_779184.1| hypothetical protein RPE_0245 [Rhodopseudomonas palustris BisA53]
 gb|ABJ04204.1| protein of unknown function DUF1058 [Rhodopseudomonas palustris
           BisA53]
          Length = 175

 Score =  272 bits (696), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 149/175 (85%)

Query: 2   VAFWRFSSLVALVGSMLSASVMPGHSAKDLSPTTSGLPIPRYVSLKSDHVNVRAGPTKDN 61
           +A  R+ +L  +V      SV    +AKD   TTSGLPIPRYVSLKSDHVNVRAGPTKDN
Sbjct: 1   MALGRWVALAGVVSLSWGLSVTASQAAKDSPATTSGLPIPRYVSLKSDHVNVRAGPTKDN 60

Query: 62  DVAWVYTRSGLPVEITAEFENWRRVRDSEGAEGWVYHSLLSGRRTAVVTMKNKDDLASLY 121
           DVAWVYTRSGLPVEITAE+ENWRRVRDSEGAEGWVYHSLLSGRRTAV+TMKNKDDLA +Y
Sbjct: 61  DVAWVYTRSGLPVEITAEYENWRRVRDSEGAEGWVYHSLLSGRRTAVITMKNKDDLAPVY 120

Query: 122 DRPDATSAVAARLQAGVVAQVKKCANNWCRVTGSGFDGWIEQQRLWGVYADEKVD 176
           D  +  S+VAA+LQ GVVAQ+K+CA+ WCRV G+GF+GWI+Q+RLWGVYADEKV+
Sbjct: 121 DEANPASSVAAKLQVGVVAQIKRCASGWCRVLGNGFEGWIQQERLWGVYADEKVE 175


>ref|YP_316656.1| hypothetical protein Nwi_0036 [Nitrobacter winogradskyi Nb-255]
 gb|ABA03304.1| Protein of unknown function DUF1058 [Nitrobacter winogradskyi
           Nb-255]
          Length = 176

 Score =  272 bits (696), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 144/176 (81%)

Query: 1   MVAFWRFSSLVALVGSMLSASVMPGHSAKDLSPTTSGLPIPRYVSLKSDHVNVRAGPTKD 60
           M   WR  S+V    ++ + ++     AKD + +TSGLP+PRYVSLKSDHVNVRAGPTKD
Sbjct: 1   MTVRWRVLSMVFAAATLGAVAIETTADAKDSALSTSGLPVPRYVSLKSDHVNVRAGPTKD 60

Query: 61  NDVAWVYTRSGLPVEITAEFENWRRVRDSEGAEGWVYHSLLSGRRTAVVTMKNKDDLASL 120
           NDVAWVYT++GLPVEITAEFENWRR+RDSEGAEGWVYHSLLSGRRTAVVTMK KDD   L
Sbjct: 61  NDVAWVYTKAGLPVEITAEFENWRRIRDSEGAEGWVYHSLLSGRRTAVVTMKAKDDFTPL 120

Query: 121 YDRPDATSAVAARLQAGVVAQVKKCANNWCRVTGSGFDGWIEQQRLWGVYADEKVD 176
           YDR D    VAARLQAGVV QVK+CA  WC VTG GFDGWIEQQRLWGVYADEK++
Sbjct: 121 YDRADVQGNVAARLQAGVVTQVKRCAAGWCHVTGDGFDGWIEQQRLWGVYADEKIN 176


>ref|YP_530247.1| hypothetical protein RPC_0353 [Rhodopseudomonas palustris BisB18]
 gb|ABD85928.1| protein of unknown function DUF1058 [Rhodopseudomonas palustris
           BisB18]
          Length = 175

 Score =  271 bits (694), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/175 (76%), Positives = 149/175 (85%)

Query: 2   VAFWRFSSLVALVGSMLSASVMPGHSAKDLSPTTSGLPIPRYVSLKSDHVNVRAGPTKDN 61
           +A  RF   + +  ++L A+   GH+AKD   + SGLPIPRYVSLKSDHVNVRAGPTKDN
Sbjct: 1   MAVKRFVVSLVVASAVLGAAATVGHAAKDGPISASGLPIPRYVSLKSDHVNVRAGPTKDN 60

Query: 62  DVAWVYTRSGLPVEITAEFENWRRVRDSEGAEGWVYHSLLSGRRTAVVTMKNKDDLASLY 121
           DVAWVYTRSGLPVEITAE+ENWRRVRDSEGAEGWVYHSLLSGRRTAVVTMK+KD+LA LY
Sbjct: 61  DVAWVYTRSGLPVEITAEYENWRRVRDSEGAEGWVYHSLLSGRRTAVVTMKSKDELAPLY 120

Query: 122 DRPDATSAVAARLQAGVVAQVKKCANNWCRVTGSGFDGWIEQQRLWGVYADEKVD 176
           D    TS VAARLQAGV+ QVK+CA  WCRV G+GFDGWI+Q+RLWGVYADEKVD
Sbjct: 121 DSASVTSPVAARLQAGVLTQVKRCAQGWCRVIGNGFDGWIQQERLWGVYADEKVD 175