BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0009.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202289.1| LysR family transcriptional regulator [Brady... 445 e-123 ref|YP_530346.1| LysR family transcriptional regulator [Rhodopse... 426 e-117 ref|YP_001686235.1| LysR family transcriptional regulator [Caulo... 317 1e-84 ref|YP_003694946.1| LysR family transcriptional regulator [Stark... 307 2e-81 ref|ZP_08870853.1| LysR family transcriptional regulator [Azospi... 299 5e-79 >ref|YP_001202289.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL74039.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS 278] Length = 314 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/299 (70%), Positives = 251/299 (83%) Query: 9 MQDFDLRDLDAFVAVARTRNFRRAALEQRVSVSSLSQRLRDMEERLGVRLMNRTTRSVAL 68 M D DLRDL AFVAVART NFRRAA EQ V+VSSLSQRL+++E+RLG+RL+NRTTRS+ L Sbjct: 1 MSDPDLRDLQAFVAVARTGNFRRAAREQGVAVSSLSQRLKELEQRLGLRLLNRTTRSLGL 60 Query: 69 TEAGELLLARVAPAMVNVADAITEVRGLRAEPSGRLRINAPPPAVELVLAPMIAPFLARY 128 T+AGE LLAR+ PA++ + AI +VRG + +GRLRINAPPPAV+LVLAPM+APFLA Y Sbjct: 61 TQAGEALLARLEPALLEIEAAIDQVRGQQQVAAGRLRINAPPPAVDLVLAPMVAPFLAAY 120 Query: 129 PRVDLDVVAESAFVDVVAQGFDAGVRYGEHLAQDMVAVPLGAPQRYAIVASSAYVAKHGR 188 PRV+L++ AES FVD+V GFDAGVRYGEHLAQDM+AVPLG PQRYAIVAS +V +HGR Sbjct: 121 PRVELEIAAESGFVDIVQAGFDAGVRYGEHLAQDMIAVPLGEPQRYAIVASPEHVERHGR 180 Query: 189 PMHPKDLLAHPCIRSRFSNGVMFDWEFEKNGRVVKISPPAKLTATHLGLALRAVHDGVGY 248 P HP+DLL H CIR+R S+G M DWEFEK+G+V++I+PP KL A LGLA RA DGVGY Sbjct: 181 PSHPRDLLQHACIRARLSSGAMLDWEFEKDGQVIRIAPPPKLIAVQLGLAFRAACDGVGY 240 Query: 249 WATFEGYVRYGVKSGALVSVLDDWCPPFDGPFLYYPSRRQPPPALAAFVSFVADWRKQA 307 W FEG+VR + G LVSVLDDWCPPF GP+LYYPSRRQPPPALAAFV+FV +WR++A Sbjct: 241 WMAFEGHVRQALADGRLVSVLDDWCPPFRGPYLYYPSRRQPPPALAAFVAFVGEWRRRA 299 >ref|YP_530346.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD86027.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 304 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/301 (68%), Positives = 248/301 (82%) Query: 9 MQDFDLRDLDAFVAVARTRNFRRAALEQRVSVSSLSQRLRDMEERLGVRLMNRTTRSVAL 68 M D DLRDL AFVAVAR++NFRRAALE VSVSSLSQRLRD+EERLGVRL++RTTRSVAL Sbjct: 1 MTDLDLRDLAAFVAVARSKNFRRAALESAVSVSSLSQRLRDIEERLGVRLLHRTTRSVAL 60 Query: 69 TEAGELLLARVAPAMVNVADAITEVRGLRAEPSGRLRINAPPPAVELVLAPMIAPFLARY 128 TEAGE LLARV PA+ +V A+ +VRGLR P+GRLRINAP PAV+LVLAPM+ PFL Y Sbjct: 61 TEAGEALLARVGPALRDVDAALDQVRGLRGVPAGRLRINAPAPAVDLVLAPMVTPFLQAY 120 Query: 129 PRVDLDVVAESAFVDVVAQGFDAGVRYGEHLAQDMVAVPLGAPQRYAIVASSAYVAKHGR 188 P++DL++VA+++ +D+VA GFDAGVRYGEHLAQDM+A+ LG P+R+ +VAS YVA+HG Sbjct: 121 PQIDLEIVAQTSLIDIVAAGFDAGVRYGEHLAQDMIAISLGPPERFVVVASPHYVAQHGA 180 Query: 189 PMHPKDLLAHPCIRSRFSNGVMFDWEFEKNGRVVKISPPAKLTATHLGLALRAVHDGVGY 248 P P+DLLAH CIR RF +G M DWEFE+ GRVV+++P L A + LA+RA DG+G+ Sbjct: 181 PKQPQDLLAHRCIRIRFESGAMPDWEFEQAGRVVRVTPRGPLVAGYSQLAIRAALDGLGF 240 Query: 249 WATFEGYVRYGVKSGALVSVLDDWCPPFDGPFLYYPSRRQPPPALAAFVSFVADWRKQAR 308 +A FEGYVR + +G LVSVLDDWC PF GPFLYYPSRRQPPPALAA + FV +WRK+ R Sbjct: 241 FAAFEGYVRADIAAGRLVSVLDDWCEPFPGPFLYYPSRRQPPPALAALIGFVMEWRKKER 300 Query: 309 R 309 R Sbjct: 301 R 301 >ref|YP_001686235.1| LysR family transcriptional regulator [Caulobacter sp. K31] gb|ABZ73737.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 299 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 159/296 (53%), Positives = 201/296 (67%) Query: 9 MQDFDLRDLDAFVAVARTRNFRRAALEQRVSVSSLSQRLRDMEERLGVRLMNRTTRSVAL 68 M DL DL AF AVAR R+FR AA ++ VS SSLS+ LR +E LGVRL+NRTTRSV Sbjct: 1 MAQPDLADLSAFTAVARARSFRGAAAQRGVSASSLSEALRRLEADLGVRLLNRTTRSVTP 60 Query: 69 TEAGELLLARVAPAMVNVADAITEVRGLRAEPSGRLRINAPPPAVELVLAPMIAPFLARY 128 TEAGE LLAR+ PA+ +V A+ EV R P+G L++N P +V +I FLA + Sbjct: 61 TEAGERLLARLTPALADVTLALDEVNAFRDSPTGVLKLNVPGAVARIVFPDLIPRFLAAH 120 Query: 129 PRVDLDVVAESAFVDVVAQGFDAGVRYGEHLAQDMVAVPLGAPQRYAIVASSAYVAKHGR 188 P + L++ AE +FVDV+A GFDAG RY E L +DM+AVPL PQR+ +V S AY A+HGR Sbjct: 121 PGIRLEITAEDSFVDVLAAGFDAGARYDERLEKDMIAVPLAGPQRFVVVGSPAYFAEHGR 180 Query: 189 PMHPKDLLAHPCIRSRFSNGVMFDWEFEKNGRVVKISPPAKLTATHLGLALRAVHDGVGY 248 P HP+++L HPCIR RF +G + WEFEK+G V+++SP L T L L A GVG Sbjct: 181 PTHPREVLNHPCIRHRFPSGTSYAWEFEKDGEVIRVSPEGPLITTSGELELAAAEAGVGL 240 Query: 249 WATFEGYVRYGVKSGALVSVLDDWCPPFDGPFLYYPSRRQPPPALAAFVSFVADWR 304 ATFEG+ +G+++G L +VLDDW PF GP+LYYPSRR P L AFV FV R Sbjct: 241 LATFEGFAIHGIRAGKLETVLDDWLAPFSGPYLYYPSRRHMPAPLRAFVDFVKAER 296 >ref|YP_003694946.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH90327.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 301 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 157/292 (53%), Positives = 198/292 (67%) Query: 9 MQDFDLRDLDAFVAVARTRNFRRAALEQRVSVSSLSQRLRDMEERLGVRLMNRTTRSVAL 68 M DL LDAFVAVAR R+FR++A E+ VS S+LS+ +R +EE+LGVRLMNRTTRSV L Sbjct: 1 MAKPDLSLLDAFVAVARQRSFRQSAKERGVSASTLSEAMRRLEEQLGVRLMNRTTRSVTL 60 Query: 69 TEAGELLLARVAPAMVNVADAITEVRGLRAEPSGRLRINAPPPAVELVLAPMIAPFLARY 128 TEAG L R+ PA+ +V +A+ EV R P G LR+N P P LAP++ FLA Y Sbjct: 61 TEAGRRLFDRLVPALSDVGEALDEVNHFRDTPIGTLRLNVPTPVARGALAPLLPDFLAAY 120 Query: 129 PRVDLDVVAESAFVDVVAQGFDAGVRYGEHLAQDMVAVPLGAPQRYAIVASSAYVAKHGR 188 P + ++V + FVDVV GFDAG RYGE LAQDM+AVPLG PQRY + AS Y+A+ G Sbjct: 121 PELTVEVHIDERFVDVVEGGFDAGARYGESLAQDMIAVPLGPPQRYGVYASPVYLARRGT 180 Query: 189 PMHPKDLLAHPCIRSRFSNGVMFDWEFEKNGRVVKISPPAKLTATHLGLALRAVHDGVGY 248 P P+DLL H CI RF++G + WEFEK+GR ++I P L + + + +RA DG+G Sbjct: 181 PCVPEDLLEHRCICHRFASGAVLPWEFEKDGRTLRIEPRGPLISNSVDVEMRAAIDGIGV 240 Query: 249 WATFEGYVRYGVKSGALVSVLDDWCPPFDGPFLYYPSRRQPPPALAAFVSFV 300 F + V G LVS+L+DW PPF+GPFLYYPSRR P AL AFV FV Sbjct: 241 AMNFTDFAAPMVADGRLVSLLEDWLPPFEGPFLYYPSRRHMPAALRAFVDFV 292 >ref|ZP_08870853.1| LysR family transcriptional regulator [Azospirillum amazonense Y2] gb|EGX99553.1| LysR family transcriptional regulator [Azospirillum amazonense Y2] Length = 303 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 147/288 (51%), Positives = 200/288 (69%) Query: 13 DLRDLDAFVAVARTRNFRRAALEQRVSVSSLSQRLRDMEERLGVRLMNRTTRSVALTEAG 72 +L DLD F+AVAR R+FRRAA E+ V+ S+LS L+ +EE LGVRL+NRTTRSV TEAG Sbjct: 5 NLADLDLFLAVARHRSFRRAAKERGVAPSTLSLALKRLEEDLGVRLLNRTTRSVTPTEAG 64 Query: 73 ELLLARVAPAMVNVADAITEVRGLRAEPSGRLRINAPPPAVELVLAPMIAPFLARYPRVD 132 + L+AR+AP VA+++ EV R P+G LR+N P L+LAP++ FLA YP + Sbjct: 65 QRLVARLAPVFSEVAESLDEVNSFRDTPTGLLRLNVPIVVSWLILAPLVPRFLAAYPGIT 124 Query: 133 LDVVAESAFVDVVAQGFDAGVRYGEHLAQDMVAVPLGAPQRYAIVASSAYVAKHGRPMHP 192 L+++ +AFVDV AQGFDAG+RYGE LAQD+VAVP+ PQRY + AS +A+ G P HP Sbjct: 125 LEIIENNAFVDVFAQGFDAGIRYGEALAQDVVAVPISPPQRYMLAASPELIAREGMPGHP 184 Query: 193 KDLLAHPCIRSRFSNGVMFDWEFEKNGRVVKISPPAKLTATHLGLALRAVHDGVGYWATF 252 +DL+ PC+R RF++ + WEFE+ VV+I P +L + +A+ A G+G++ TF Sbjct: 185 RDLIGRPCLRHRFADSAVQPWEFERGDEVVRIQPDGRLIGNSVQIAVSAAEAGLGWFCTF 244 Query: 253 EGYVRYGVKSGALVSVLDDWCPPFDGPFLYYPSRRQPPPALAAFVSFV 300 EG++ + +G LV L DW PPF GP+LYYPSRR P L AF+ F+ Sbjct: 245 EGFLAPSLAAGRLVPALQDWLPPFPGPYLYYPSRRHVPAPLRAFIDFM 292