BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0005.p (439 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767404.1| hypothetical protein bll0764 [Bradyrhizobium ja... 649 0.0 ref|YP_001236282.1| peptidoglycan binding domain-containing prot... 609 e-172 ref|YP_001202292.1| hypothetical protein BRADO0070 [Bradyrhizobi... 605 e-171 ref|YP_779181.1| peptidoglycan binding domain-containing protein... 568 e-159 ref|YP_530259.1| peptidoglycan binding domain-containing protein... 565 e-159 >ref|NP_767404.1| hypothetical protein bll0764 [Bradyrhizobium japonicum USDA 110] dbj|BAC46029.1| bll0764 [Bradyrhizobium japonicum USDA 110] Length = 468 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/437 (73%), Positives = 375/437 (85%), Gaps = 1/437 (0%) Query: 4 AQAQMTPPSTAGAKPKTVATVPIRP-ALQKPEDTAGAMAQAERLALQSDLAWVGEYNGAI 62 A AQMT P G KPKTV TVPIRP ALQ P +TA AMAQAERL+LQSDLAWVG+YNGAI Sbjct: 32 ANAQMTTPQIPGTKPKTVQTVPIRPPALQTPSETADAMAQAERLSLQSDLAWVGQYNGAI 91 Query: 63 TGDVSERMVNAIKEFQKKRGGKPTGVLNPQERGVLADTARRKQEGVGWRIVTEPATGARL 122 TG+VSERMVNAIKE+QK +GGKPTGVLNPQER LA+TARRKQ+ VGW+IVTE +GARL Sbjct: 92 TGEVSERMVNAIKEYQKNKGGKPTGVLNPQERAALAETARRKQDSVGWKIVTEMTSGARL 151 Query: 123 GIPTKLVPQLTSDAAGAKWTSPTGTVQVLLARRKEASPTTAKLAEQEKKEPAGRTIDYTV 182 GIP+KLVPQ +DA G+KWTSPTGTVQVLL+RRKEA+PTTAKLA+ EKKEPAGR +DYTV Sbjct: 152 GIPSKLVPQQATDANGSKWTSPTGTVQVLLSRRKEANPTTAKLADAEKKEPAGRKVDYTV 211 Query: 183 VKPDFFVLSGMQGLKKFYLRGTLKGDEVRILTILYDQAMQTTIEPVVIAMSSAFNAFPSA 242 VKPDFFVLSG+QGLKKFY+RGT KGDEVRI+TILYDQA + T+EPVVIAMSSAFNAFP+ Sbjct: 212 VKPDFFVLSGLQGLKKFYVRGTFKGDEVRIMTILYDQATENTVEPVVIAMSSAFNAFPAG 271 Query: 243 VQAGPPPRKTVEYATGVVVSDDGAIVTDRVATDDCIALTIPGYGNADRVAEDRDHDLALL 302 QAGPPPRKTVEY TG+VVSDDGAI+TDR+ TD C+A+TI GYG+ADR+AED++HDLALL Sbjct: 272 PQAGPPPRKTVEYGTGIVVSDDGAILTDRLVTDSCLAITIAGYGSADRLAEDKEHDLALL 331 Query: 303 RIYGARGLKPLNIAGQATQTALDITGIADPQNQGGGAAASSVKASVAQIGGGDQALSPAP 362 IYGARGLKPL +AG +T +D+ GIADPQ+QGG A SSVK ++A++ D ALSP P Sbjct: 332 HIYGARGLKPLGLAGGGAKTNVDVVGIADPQSQGGAAGVSSVKGALARVTSSDSALSPPP 391 Query: 363 ALGFSGAAATDSGGRFAGIATLKPVIVAGPANAAPPAQAALVPADAVRSFLKAHGVTVSG 422 A+GFSG+ A D+ +FAGIA LKP +VAGPA + P +QA +V A+ VR FLKA+GVT +G Sbjct: 392 AVGFSGSPAIDADSKFAGIALLKPAMVAGPATSVPASQAVMVSAETVRDFLKANGVTANG 451 Query: 423 ESADAKAAVVRVICVRK 439 SADAKAAVVRVICVRK Sbjct: 452 SSADAKAAVVRVICVRK 468 >ref|YP_001236282.1| peptidoglycan binding domain-containing protein [Bradyrhizobium sp. BTAi1] gb|ABQ32376.1| putative exported protein of unknown function with peptidoglycan binding domain [Bradyrhizobium sp. BTAi1] Length = 459 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 304/425 (71%), Positives = 359/425 (84%), Gaps = 2/425 (0%) Query: 15 GAKPKTVATVPIRPALQKPEDTAGAMAQAERLALQSDLAWVGEYNGAITGDVSERMVNAI 74 GAKPK VAT P+RP +Q P DTA AM QAERLALQSDLAWVG+YNGAITGDVSERMVNAI Sbjct: 37 GAKPKPVATQPVRPGVQAPADTANAMGQAERLALQSDLAWVGQYNGAITGDVSERMVNAI 96 Query: 75 KEFQKKRGGKPTGVLNPQERGVLADTARRKQEGVGWRIVTEPATGARLGIPTKLVPQLTS 134 KE+QK +GGKPTGVLNPQER VLADTARRKQE VGW++VTEP +GARLGIPT+LVPQ +S Sbjct: 97 KEYQKLKGGKPTGVLNPQERAVLADTARRKQESVGWKLVTEPVSGARLGIPTRLVPQQSS 156 Query: 135 DAAGAKWTSPTGTVQVLLARRKEASPTTAKLAEQEKKEPAGRTIDYTVVKPDFFVLSGMQ 194 D G+KW+SPTGTVQV+L+RRKEASPT+A LA++EKKEP GRT+DY+VVKPDFFVLSG+Q Sbjct: 157 DGTGSKWSSPTGTVQVVLSRRKEASPTSAALADREKKEP-GRTVDYSVVKPDFFVLSGLQ 215 Query: 195 GLKKFYLRGTLKGDEVRILTILYDQAMQTTIEPVVIAMSSAFNAFPSAVQAGPPPRKTVE 254 LKKFY+RGT KGDEVRILTILYDQA + T+EPVVIAMSSAF FP+ A P PR++V+ Sbjct: 216 NLKKFYIRGTFKGDEVRILTILYDQATENTVEPVVIAMSSAFTPFPATQAAAPAPRRSVD 275 Query: 255 YATGVVVSDDGAIVTDRVATDDCIALTIPGYGNADRVAEDRDHDLALLRIYGARGLKPLN 314 Y TG++ + DGAI+TDR +D C+ALTIPG+G+A+RVAED++ LALLRIYGARGLKPL Sbjct: 276 YGTGIIATQDGAIITDREVSDGCVALTIPGFGHAERVAEDKERGLALLRIYGARGLKPLA 335 Query: 315 IAGQATQTALDITGIADPQNQGGGAAASSVKASVAQIGGGDQALSPAPALGFSGAAATDS 374 ++G + ++++DI GIADPQ+QGGGAA S+VKA +A +G GD AL+PAP LGFSG AA D Sbjct: 336 LSGGSARSSIDIVGIADPQSQGGGAAISTVKAQLAGVGSGDAALAPAPGLGFSGGAALDG 395 Query: 375 GGRFAGIATLKPVIVAGPANAAPPAQAALVPADAVRSFLKAHGVTVSGESADAKAAVVRV 434 GRFAGI LKP ++AG A P QA +V A+A R+FLKAHGVT G S DAKAA VRV Sbjct: 396 DGRFAGITLLKPGLLAGTA-MIPATQAVMVSAEATRAFLKAHGVTPDGTSLDAKAATVRV 454 Query: 435 ICVRK 439 ICVRK Sbjct: 455 ICVRK 459 >ref|YP_001202292.1| hypothetical protein BRADO0070 [Bradyrhizobium sp. ORS 278] emb|CAL74042.1| conserved hypothetical protein; Putative signal peptide; putative Peptidoglycan binding domain protein [Bradyrhizobium sp. ORS 278] Length = 455 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 302/442 (68%), Positives = 359/442 (81%), Gaps = 6/442 (1%) Query: 2 SVAQAQMTPPSTA---GAKPKTVATVPIRPALQKPEDTAGAMAQAERLALQSDLAWVGEY 58 SV TPP+ GAKPK V T P+RP +Q P DTA M+Q ERLALQSDLAWVG+Y Sbjct: 16 SVPSHAQTPPTQGVLPGAKPKPVTTQPVRPGVQAPADTANEMSQTERLALQSDLAWVGQY 75 Query: 59 NGAITGDVSERMVNAIKEFQKKRGGKPTGVLNPQERGVLADTARRKQEGVGWRIVTEPAT 118 NGAITGDVSERMVNAIKE+QK +GGKPTGVLNPQER VLADTARRKQEGVGW++VTEP + Sbjct: 76 NGAITGDVSERMVNAIKEYQKLKGGKPTGVLNPQERAVLADTARRKQEGVGWKLVTEPTS 135 Query: 119 GARLGIPTKLVPQLTSDAAGAKWTSPTGTVQVLLARRKEASPTTAKLAEQEKKEPAGRTI 178 GARLGIPTKL+PQ T+DA G+KWTSPTGTVQV+L+RRKEA+PTTA LA++EKKEP GRT+ Sbjct: 136 GARLGIPTKLMPQQTTDANGSKWTSPTGTVQVVLSRRKEANPTTAALADREKKEP-GRTV 194 Query: 179 DYTVVKPDFFVLSGMQGLKKFYLRGTLKGDEVRILTILYDQAMQTTIEPVVIAMSSAFNA 238 DY+VVKPDFFVLSG+Q LKKFY+RGT KGDEVRILTILYDQA + T+EPVVIAMSSAF A Sbjct: 195 DYSVVKPDFFVLSGLQNLKKFYIRGTFKGDEVRILTILYDQATENTVEPVVIAMSSAFTA 254 Query: 239 FPSA-VQAGPPPRKTVEYATGVVVSDDGAIVTDRVATDDCIALTIPGYGNADRVAEDRDH 297 FP+A + A P PR++V+Y TG++VS DGAIV DR T+ C+A+TIPG+G A+R+A+D++ Sbjct: 255 FPAATLAAQPAPRRSVDYGTGIIVSADGAIVADREVTEACVAITIPGFGPAERIADDKER 314 Query: 298 DLALLRIYGARGLKPLNIAGQATQTALDITGIADPQNQGGGAAASSVKASVAQIGGGDQA 357 LALLRIYG RGLKPL ++G ++++DI GIADPQ+QGGGAA S VKA +A G GD + Sbjct: 315 GLALLRIYGGRGLKPLALSGGTARSSVDIVGIADPQSQGGGAAISMVKAQLAGNGSGDMS 374 Query: 358 LSPAPALGFSGAAATDSGGRFAGIATLKPVIVAGPANAAPPAQAALVPADAVRSFLKAHG 417 L+PAP LGFSGAA D GRF G+ LKP ++AG A P +Q +V AD R+FL A+G Sbjct: 375 LAPAPGLGFSGAATLDGDGRFVGVTLLKPGVLAGSA-FVPSSQVVMVSADTTRAFLAANG 433 Query: 418 VTVSGESADAKAAVVRVICVRK 439 V G S DAKAA VRVICVRK Sbjct: 434 VKPDGTSTDAKAATVRVICVRK 455 >ref|YP_779181.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisA53] gb|ABJ04201.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris BisA53] Length = 456 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 288/439 (65%), Positives = 353/439 (80%), Gaps = 3/439 (0%) Query: 4 AQAQMTPPSTAGAKPKTVATVPIRPALQKPEDTAGAMAQAERLALQSDLAWVGEYNGAIT 63 AQAQMT AG KPK VAT P+RPALQ P DTA AMAQAER A+QSDLAW G +NGAI+ Sbjct: 18 AQAQMTNAPIAGVKPKPVATTPVRPALQTPADTANAMAQAERQAIQSDLAWTGHFNGAIS 77 Query: 64 GDVSERMVNAIKEFQKKRGGKPTGVLNPQERGVLADTARRKQEGVGWRIVTEPATGARLG 123 G+VSERM+ AIK FQ GG+PTGVLNPQERG+LA +AR+ Q+ VGW+++ +P +GARLG Sbjct: 78 GEVSERMLGAIKAFQNDNGGRPTGVLNPQERGLLAASARKAQDNVGWKLIADPVSGARLG 137 Query: 124 IPTKLVPQLTSDAAGAKWTSPTGTVQVLLARRKEASPTTAKLAEQEKKEPAGRTIDYTVV 183 +P KLVP ++DA GA+W+S TGT+Q+ L+RRKEA+ +TAKLAEQEKKEPAGR + Y+VV Sbjct: 138 LPQKLVPTQSADANGARWSSSTGTIQIQLSRRKEAAVSTAKLAEQEKKEPAGRKVAYSVV 197 Query: 184 KPDFFVLSGMQGLKKFYLRGTLKGDEVRILTILYDQAMQTTIEPVVIAMSSAFNAFPS-A 242 KPDFFVLSGMQGLKKFY+RG K EVRILTILYDQA + T++PVVIAMSSAFN FP+ A Sbjct: 198 KPDFFVLSGMQGLKKFYVRGQFKDAEVRILTILYDQATEGTMDPVVIAMSSAFNPFPAGA 257 Query: 243 VQAGPPPRKTVEYATGVVVSDDGAIVTDRVATDDCIALTIPGYGNADRVAEDRDHDLALL 302 + GPPPRK VEYA+G+VV +GAIVTDR A D C+++ + GYG+AD +D+DHDLALL Sbjct: 258 LAVGPPPRKKVEYASGIVVDGNGAIVTDRQAVDSCLSVVVAGYGHADIDEQDKDHDLALL 317 Query: 303 RIYGARGLKPLNIAGQATQTALDITGIADPQNQGGGAAASSVKASVAQIG-GGDQALSPA 361 R+YGA GLKP+ + G + A+++ GIADPQ+QGGGAAASSV+++ IG GD AL PA Sbjct: 318 RVYGAHGLKPMALDGGTAKPAVELIGIADPQSQGGGAAASSVRSAATPIGSNGDLALVPA 377 Query: 362 PALGFSGAAATDSGGRFAGIATLKPVIVAGPANAAPPAQAALVPADAVRSFLKAHGVT-V 420 P GFSGAAA D+ G+FAG+A KPV+ AGPAN A PAQA LVPAD VR FL+A+ + + Sbjct: 378 PGPGFSGAAAVDADGKFAGLAQSKPVLFAGPANGALPAQAGLVPADVVRGFLEANEIVPL 437 Query: 421 SGESADAKAAVVRVICVRK 439 G +DAKA+VVRVICVRK Sbjct: 438 RGAVSDAKASVVRVICVRK 456 >ref|YP_530259.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisB18] gb|ABD85940.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris BisB18] Length = 456 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 299/439 (68%), Positives = 357/439 (81%), Gaps = 3/439 (0%) Query: 4 AQAQMTPPSTAGAKPKTVATVPIRPALQKPEDTAGAMAQAERLALQSDLAWVGEYNGAIT 63 A AQM+PP+TAG KPK VATV IRPALQ P +TA AMAQAER A+QSDLAW G YNGAI Sbjct: 18 ATAQMSPPATAGGKPKPVATVAIRPALQTPANTANAMAQAERTAIQSDLAWAGHYNGAIN 77 Query: 64 GDVSERMVNAIKEFQKKRGGKPTGVLNPQERGVLADTARRKQEGVGWRIVTEPATGARLG 123 G+ SERMV AIK FQ RGGKPTGVLNPQERG LA+ A++ ++ VGW++V++ TGARLG Sbjct: 78 GEGSERMVAAIKAFQTDRGGKPTGVLNPQERGTLAEVAKKAKDNVGWKLVSDSVTGARLG 137 Query: 124 IPTKLVPQLTSDAAGAKWTSPTGTVQVLLARRKEASPTTAKLAEQEKKEPAGRTIDYTVV 183 +P KLVPQ TSDA GAKW+S TGT+QVLL+RRKEA P+TAKLA QEK EPAGR ++Y+ V Sbjct: 138 LPLKLVPQQTSDANGAKWSSSTGTIQVLLSRRKEAEPSTAKLAAQEKTEPAGRKVEYSAV 197 Query: 184 KPDFFVLSGMQGLKKFYLRGTLKGDEVRILTILYDQAMQTTIEPVVIAMSSAFNAFPSAV 243 KPDFFVLSG+QGLKKFY+RG K EVRILTILYDQA + T+EPVVIAMSSAF FP+ V Sbjct: 198 KPDFFVLSGLQGLKKFYVRGAFKDAEVRILTILYDQATEGTMEPVVIAMSSAFTPFPAGV 257 Query: 244 Q-AGPPPRKTVEYATGVVVSDDGAIVTDRVATDDCIALTIPGYGNADRVAEDRDHDLALL 302 Q AGPPPRK+VEY+TGVVVS DGAI+ DR A D C A+ + G G A++VAED+ HDLALL Sbjct: 258 QAAGPPPRKSVEYSTGVVVSADGAILADRQAVDGCQAIVVAGLGRAEKVAEDKAHDLALL 317 Query: 303 RIYGARGLKPLNIAGQATQTALDITGIADPQNQGGGAAASSVKASVAQIGGG-DQALSPA 361 R+YGA+GL PL + G A + ++++ GIADPQ+QGGG+AASSV+A +A + G D AL+PA Sbjct: 318 RVYGAQGLAPLGLGGGAAKPSVELIGIADPQSQGGGSAASSVRAQIAPVAAGRDLALTPA 377 Query: 362 PALGFSGAAATDSGGRFAGIATLKPVIVAGPANAAPPAQAALVPADAVRSFLKAHGVTVS 421 P LGFSGAAA D+ GRFAG+A LKPV+ AGPAN A PAQA LVPA+ VR FLK + V + Sbjct: 378 PGLGFSGAAAVDAEGRFAGLALLKPVLFAGPANGAAPAQAMLVPAETVRGFLKDNAVATT 437 Query: 422 GESA-DAKAAVVRVICVRK 439 SA DAKA+V+R+ICVRK Sbjct: 438 AASAGDAKASVLRLICVRK 456