BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0003.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767402.1| formamidopyrimidine-DNA glycosylase [Bradyrhizo... 512 e-143 ref|YP_575409.1| formamidopyrimidine-DNA glycosylase [Nitrobacte... 506 e-141 ref|YP_001202295.1| formamidopyrimidine-DNA glycosylase [Bradyrh... 506 e-141 ref|YP_001236287.1| formamidopyrimidine-DNA glycosylase [Bradyrh... 504 e-141 ref|ZP_08628043.1| formamidopyrimidine-DNA glycosylase [Bradyrhi... 491 e-137 >ref|NP_767402.1| formamidopyrimidine-DNA glycosylase [Bradyrhizobium japonicum USDA 110] sp|Q89WC9.3|FPG_BRAJA RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase mutM; Short=AP lyase mutM dbj|BAC46027.1| formamidopyrimidine-DNA glycosylase [Bradyrhizobium japonicum USDA 110] Length = 293 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 239/293 (81%), Positives = 264/293 (90%) Query: 1 MPELPEVETVRRGLQPAMEGSRILKAEARRKDLRFPFQKDFIARLEGRTITGLGRRAKYL 60 MPELPEVETVRRGLQP MEG++I+ AEARR DLRFPFQ DF+ARL+G+ +TGLGRRAKYL Sbjct: 1 MPELPEVETVRRGLQPVMEGAKIVVAEARRPDLRFPFQPDFVARLQGQVVTGLGRRAKYL 60 Query: 61 MADLNSGDVLLMHLGMSGSFRVLKQDGAATPGQFHHPRSEDRAHDHVVFHMSSGAAVVFN 120 MADL SGDVLLMHLGMSGSFRV+K D A PG+FH+PR +D HDHV+F MSSGA +VFN Sbjct: 61 MADLASGDVLLMHLGMSGSFRVIKPDNDAAPGEFHYPRGKDTTHDHVLFRMSSGADIVFN 120 Query: 121 DPRRFGYMKIIARNAIEDEPLLKGLGPEPLGNEFDAAMLARSCHNKKTSLKAALLDQRVV 180 DPRRFGYMK+IARNA+EDEPLL+GLGPEPLGNEFDAAMLARSC K TSLKAALLDQRVV Sbjct: 121 DPRRFGYMKVIARNALEDEPLLRGLGPEPLGNEFDAAMLARSCEGKATSLKAALLDQRVV 180 Query: 181 AGLGNIYVCEALFRSHLSPRRLAATLATKKAEPTDHARRLVDAIHSVLNQAIKAGGSSIS 240 AGLGNIYVCEAL RSHLSPRR+AATLAT+K EPTDHA+RLV AIH+VLN AIKAGGSS+ Sbjct: 181 AGLGNIYVCEALHRSHLSPRRIAATLATRKGEPTDHAKRLVGAIHTVLNDAIKAGGSSLR 240 Query: 241 DHRLTNGDLGYFQHSFQVYDREGETCRTSGCEGIVKRFTQNGRSTFWCPKCQK 293 DHR T G+LGYFQHSF+VYDREGETC+T C G +KRFTQNGRSTFWCPKCQK Sbjct: 241 DHRQTTGELGYFQHSFKVYDREGETCKTPACGGTIKRFTQNGRSTFWCPKCQK 293 >ref|YP_575409.1| formamidopyrimidine-DNA glycosylase [Nitrobacter hamburgensis X14] gb|ABE60949.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrobacter hamburgensis X14] Length = 293 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 239/293 (81%), Positives = 260/293 (88%) Query: 1 MPELPEVETVRRGLQPAMEGSRILKAEARRKDLRFPFQKDFIARLEGRTITGLGRRAKYL 60 MPELPEVETVRRGLQPAMEG+ I++AE RRKDLRFPFQ DF+ARLEG+T+TGLGRRAKYL Sbjct: 1 MPELPEVETVRRGLQPAMEGATIVRAETRRKDLRFPFQTDFVARLEGQTVTGLGRRAKYL 60 Query: 61 MADLNSGDVLLMHLGMSGSFRVLKQDGAATPGQFHHPRSEDRAHDHVVFHMSSGAAVVFN 120 +ADL SGDVLLMHLGMSGSFRV+ GA PG HHPR+EDRAHDHV F MSSGA+V+FN Sbjct: 61 LADLASGDVLLMHLGMSGSFRVIDAAGATAPGDCHHPRNEDRAHDHVSFTMSSGASVIFN 120 Query: 121 DPRRFGYMKIIARNAIEDEPLLKGLGPEPLGNEFDAAMLARSCHNKKTSLKAALLDQRVV 180 DPRRFGYMK+IAR + DEPLLKGLGPEPLGNEFDAAMLAR+C +KKTSLKAALLDQRVV Sbjct: 121 DPRRFGYMKVIARTVLNDEPLLKGLGPEPLGNEFDAAMLARACRDKKTSLKAALLDQRVV 180 Query: 181 AGLGNIYVCEALFRSHLSPRRLAATLATKKAEPTDHARRLVDAIHSVLNQAIKAGGSSIS 240 AGLGNIYVCEALFR+HLSPRRLAATLA+K P D A RLV+AIH VLNQAIKAGGSS+ Sbjct: 181 AGLGNIYVCEALFRAHLSPRRLAATLASKTGGPADRAGRLVEAIHDVLNQAIKAGGSSLR 240 Query: 241 DHRLTNGDLGYFQHSFQVYDREGETCRTSGCEGIVKRFTQNGRSTFWCPKCQK 293 DHR T G+LGYFQHSF+VYDREGE CRT C G VKRFTQNGRSTFWCP CQK Sbjct: 241 DHRQTTGELGYFQHSFRVYDREGEKCRTPTCRGTVKRFTQNGRSTFWCPVCQK 293 >ref|YP_001202295.1| formamidopyrimidine-DNA glycosylase [Bradyrhizobium sp. ORS 278] sp|A4YJG9.1|FPG_BRASO RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase mutM; Short=AP lyase mutM emb|CAL74045.1| Bifunctional mutM protein:Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase); (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM) [Bradyrhizobium sp. ORS 278] Length = 293 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 236/293 (80%), Positives = 263/293 (89%) Query: 1 MPELPEVETVRRGLQPAMEGSRILKAEARRKDLRFPFQKDFIARLEGRTITGLGRRAKYL 60 MPELPEVETVRRGLQP MEG++I+ AEARR DLRFPFQ DF+ RL+G+T+ GLGRRAKYL Sbjct: 1 MPELPEVETVRRGLQPVMEGAKIVTAEARRGDLRFPFQPDFVKRLQGQTVRGLGRRAKYL 60 Query: 61 MADLNSGDVLLMHLGMSGSFRVLKQDGAATPGQFHHPRSEDRAHDHVVFHMSSGAAVVFN 120 +ADL SGDVLLMHLGMSGSFRV+K + TPG+FH+PR +D HDHVVFHMSSGA +VFN Sbjct: 61 LADLGSGDVLLMHLGMSGSFRVIKPEHEETPGEFHYPRGKDSVHDHVVFHMSSGADIVFN 120 Query: 121 DPRRFGYMKIIARNAIEDEPLLKGLGPEPLGNEFDAAMLARSCHNKKTSLKAALLDQRVV 180 DPRRFG+MKII R IE EP LK LGPEPLGNEFDAAMLAR+C KKTSLKAALLDQRVV Sbjct: 121 DPRRFGFMKIIGRGEIETEPHLKDLGPEPLGNEFDAAMLARACAGKKTSLKAALLDQRVV 180 Query: 181 AGLGNIYVCEALFRSHLSPRRLAATLATKKAEPTDHARRLVDAIHSVLNQAIKAGGSSIS 240 AGLGNIYVCEALFR+HLSPRRLAATLAT+K EPTDHA+RLV+AIH+VLN+AI+AGGSS+ Sbjct: 181 AGLGNIYVCEALFRAHLSPRRLAATLATRKGEPTDHAKRLVEAIHTVLNEAIRAGGSSLR 240 Query: 241 DHRLTNGDLGYFQHSFQVYDREGETCRTSGCEGIVKRFTQNGRSTFWCPKCQK 293 DHR T G+LGYFQHSFQVYDREGE CRT GCEG+VKRF QNGRSTFWCPKCQ+ Sbjct: 241 DHRQTTGELGYFQHSFQVYDREGEPCRTDGCEGVVKRFVQNGRSTFWCPKCQR 293 >ref|YP_001236287.1| formamidopyrimidine-DNA glycosylase [Bradyrhizobium sp. BTAi1] sp|A5E887.1|FPG_BRASB RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase mutM; Short=AP lyase mutM gb|ABQ32381.1| DNA-(apurinic or apyrimidinic site) lyase [Bradyrhizobium sp. BTAi1] Length = 293 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/293 (80%), Positives = 263/293 (89%) Query: 1 MPELPEVETVRRGLQPAMEGSRILKAEARRKDLRFPFQKDFIARLEGRTITGLGRRAKYL 60 MPELPEVETVRRGLQP MEG++I+ AEARR DLRFPFQ DF RL+G+T+ GLGRRAKYL Sbjct: 1 MPELPEVETVRRGLQPVMEGAKIVAAEARRGDLRFPFQPDFAKRLQGQTVRGLGRRAKYL 60 Query: 61 MADLNSGDVLLMHLGMSGSFRVLKQDGAATPGQFHHPRSEDRAHDHVVFHMSSGAAVVFN 120 +ADL+SGDVLLMHLGMSGSFRV+KQD TPG+FH+PR +D HDHVVFHMSSGA +VFN Sbjct: 61 LADLSSGDVLLMHLGMSGSFRVIKQDDEETPGEFHYPRGKDSVHDHVVFHMSSGADIVFN 120 Query: 121 DPRRFGYMKIIARNAIEDEPLLKGLGPEPLGNEFDAAMLARSCHNKKTSLKAALLDQRVV 180 DPRRFG+MKII R IE EP LK LGPEPLGNEFDAAMLA +C KKTSLKAALLDQRVV Sbjct: 121 DPRRFGFMKIIGRGEIEREPHLKDLGPEPLGNEFDAAMLATACAGKKTSLKAALLDQRVV 180 Query: 181 AGLGNIYVCEALFRSHLSPRRLAATLATKKAEPTDHARRLVDAIHSVLNQAIKAGGSSIS 240 AGLGNIYVCEALFR+HLSPRRLAATLAT+K EPTDHARRLV+AIH+VLN+AI+AGGSS+ Sbjct: 181 AGLGNIYVCEALFRAHLSPRRLAATLATRKGEPTDHARRLVEAIHAVLNEAIRAGGSSLR 240 Query: 241 DHRLTNGDLGYFQHSFQVYDREGETCRTSGCEGIVKRFTQNGRSTFWCPKCQK 293 DHR T+G+LGYFQHSFQVYDREGE CRT GC G+VKRF QNGRSTFWCPKCQ+ Sbjct: 241 DHRQTSGELGYFQHSFQVYDREGEPCRTDGCGGVVKRFVQNGRSTFWCPKCQR 293 >ref|ZP_08628043.1| formamidopyrimidine-DNA glycosylase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08952.1| formamidopyrimidine-DNA glycosylase [Bradyrhizobiaceae bacterium SG-6C] Length = 293 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 231/293 (78%), Positives = 255/293 (87%) Query: 1 MPELPEVETVRRGLQPAMEGSRILKAEARRKDLRFPFQKDFIARLEGRTITGLGRRAKYL 60 MPELPEVETVRRGLQP MEG RI + E RR LRFPFQKDF++RLEG + GLGRRAKYL Sbjct: 1 MPELPEVETVRRGLQPVMEGQRIARVETRRDGLRFPFQKDFVSRLEGHVVAGLGRRAKYL 60 Query: 61 MADLNSGDVLLMHLGMSGSFRVLKQDGAATPGQFHHPRSEDRAHDHVVFHMSSGAAVVFN 120 MAD++SGDVLLMHLGMSGSFRV+ +G +TPG FH+PRSE+R HDHVVFHM SGA + FN Sbjct: 61 MADMDSGDVLLMHLGMSGSFRVMLPEGESTPGDFHYPRSENRTHDHVVFHMVSGAVISFN 120 Query: 121 DPRRFGYMKIIARNAIEDEPLLKGLGPEPLGNEFDAAMLARSCHNKKTSLKAALLDQRVV 180 DPRRFGYMKII R IE EPLLKGLGPEPLGNEFDAAMLA +C KKTSLKAALLDQRVV Sbjct: 121 DPRRFGYMKIIPRAEIEAEPLLKGLGPEPLGNEFDAAMLAHACAGKKTSLKAALLDQRVV 180 Query: 181 AGLGNIYVCEALFRSHLSPRRLAATLATKKAEPTDHARRLVDAIHSVLNQAIKAGGSSIS 240 AGLGNIYVCEALFRSHLSP+R A+TLA +K PTDHARRLV++IH+VLN AIKAGGSS+ Sbjct: 181 AGLGNIYVCEALFRSHLSPKRQASTLADRKDAPTDHARRLVNSIHTVLNAAIKAGGSSLR 240 Query: 241 DHRLTNGDLGYFQHSFQVYDREGETCRTSGCEGIVKRFTQNGRSTFWCPKCQK 293 DHR T+G+LGYFQHSF VYDREGE C+T C+G VKRFTQNGRSTFWCP CQK Sbjct: 241 DHRQTDGELGYFQHSFLVYDREGEPCKTPKCKGTVKRFTQNGRSTFWCPVCQK 293