BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0002.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767401.1| ubiquinone/menaquinone biosynthesis methyltrans... 467 e-130 ref|YP_001202296.1| ubiquinone/menaquinone biosynthesis methyltr... 460 e-127 ref|ZP_01045147.1| ubiquinone/menaquinone biosynthesis methyltra... 455 e-126 ref|YP_001236288.1| ubiquinone/menaquinone biosynthesis methyltr... 454 e-126 ref|YP_316661.1| ubiquinone/menaquinone biosynthesis methyltrans... 452 e-125 >ref|NP_767401.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bradyrhizobium japonicum USDA 110] sp|Q89WD0.1|UBIE_BRAJA RecName: Full=Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; AltName: Full=2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; AltName: Full=Demethylmenaquinone methyltransferase dbj|BAC46026.1| ubiquinone/menaquinone biosynthesis methlytransferase [Bradyrhizobium japonicum USDA 110] Length = 253 Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust. Identities = 221/253 (87%), Positives = 239/253 (94%) Query: 1 MDRPDQTTHFGFRDVPLGEKQTLVNDVFHSVASRYDLMNDLMSAGLHRAWKDVMITTLDP 60 MDRP +TTHFGFRDVPLG+KQTLVNDVFHSVASRYDLMNDLMS GLHR WKD+MI LDP Sbjct: 1 MDRPGETTHFGFRDVPLGDKQTLVNDVFHSVASRYDLMNDLMSGGLHRVWKDIMINALDP 60 Query: 61 PKGDRPFALLDVAGGTGDIAFRAAKTAGAGFHATVCDINTDMLAVGRERAAKQHLDDRVS 120 P+GDRPFALLDVAGGTGDI+FRAAK AG GFHATVCDIN+DMLAVGRERAAK+HL+ +V Sbjct: 61 PRGDRPFALLDVAGGTGDISFRAAKAAGPGFHATVCDINSDMLAVGRERAAKRHLETQVD 120 Query: 121 FVEGNAEALGFADRAFDAYTIAFGIRNVPQIDLALREAYRVLKPGSRFLCLEFSTVDVPG 180 FVEGNAEAL FADR+FDAYTIAFGIRNVPQIDLALREAYRVL+PGSRFLCLEFSTV++PG Sbjct: 121 FVEGNAEALAFADRSFDAYTIAFGIRNVPQIDLALREAYRVLRPGSRFLCLEFSTVEMPG 180 Query: 181 LDKIYDLFSFKVIPPLGRAVTGDAESYQYLVESIRKFPRPNAFAEMIGAAGFARVKWQSL 240 LDK+YDLFSFKVIPPLGR +TGDAESYQYLVESIRKFP+PNAFA+MI AGFARV WQ+L Sbjct: 181 LDKLYDLFSFKVIPPLGRMITGDAESYQYLVESIRKFPKPNAFADMIRDAGFARVNWQTL 240 Query: 241 SGGIVALHSGWRL 253 SGGIVALHSGWRL Sbjct: 241 SGGIVALHSGWRL 253 >ref|YP_001202296.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bradyrhizobium sp. ORS 278] sp|A4YJH0.1|UBIE_BRASO RecName: Full=Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; AltName: Full=2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; AltName: Full=Demethylmenaquinone methyltransferase emb|CAL74046.1| Ubiquinone/menaquinone biosynthesis methyltransferase ubiE [Bradyrhizobium sp. ORS 278] Length = 253 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 220/253 (86%), Positives = 234/253 (92%) Query: 1 MDRPDQTTHFGFRDVPLGEKQTLVNDVFHSVASRYDLMNDLMSAGLHRAWKDVMITTLDP 60 MD+ DQTTHFGFRDVPLGEKQTLVNDVFHSVASRYDLMNDLMS GLHR WKD+MI TL+P Sbjct: 1 MDQTDQTTHFGFRDVPLGEKQTLVNDVFHSVASRYDLMNDLMSGGLHRVWKDIMINTLNP 60 Query: 61 PKGDRPFALLDVAGGTGDIAFRAAKTAGAGFHATVCDINTDMLAVGRERAAKQHLDDRVS 120 PK D PFALLDVAGGTGDI+FRAAK AGAGFHATVCDIN DML VGR+RA KQ+LDDRVS Sbjct: 61 PKSDAPFALLDVAGGTGDISFRAAKKAGAGFHATVCDINGDMLEVGRQRALKQYLDDRVS 120 Query: 121 FVEGNAEALGFADRAFDAYTIAFGIRNVPQIDLALREAYRVLKPGSRFLCLEFSTVDVPG 180 FVEGNAE+L F DR+FDAYTIAFGIRNVPQIDLAL EAYRVLK G RFLCLEFSTV+VPG Sbjct: 121 FVEGNAESLAFPDRSFDAYTIAFGIRNVPQIDLALAEAYRVLKHGGRFLCLEFSTVEVPG 180 Query: 181 LDKIYDLFSFKVIPPLGRAVTGDAESYQYLVESIRKFPRPNAFAEMIGAAGFARVKWQSL 240 LDK+YDLFSF VIP LGRAVTGDAESY+YLVESIR+FPRPNAFAEMI AAGF+RV WQ+L Sbjct: 181 LDKLYDLFSFNVIPQLGRAVTGDAESYRYLVESIRQFPRPNAFAEMISAAGFSRVSWQTL 240 Query: 241 SGGIVALHSGWRL 253 SGGIVALHSGWRL Sbjct: 241 SGGIVALHSGWRL 253 >ref|ZP_01045147.1| ubiquinone/menaquinone biosynthesis methyltransferase [Nitrobacter sp. Nb-311A] gb|EAQ37152.1| ubiquinone/menaquinone biosynthesis methyltransferase [Nitrobacter sp. Nb-311A] Length = 282 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 220/253 (86%), Positives = 233/253 (92%) Query: 1 MDRPDQTTHFGFRDVPLGEKQTLVNDVFHSVASRYDLMNDLMSAGLHRAWKDVMITTLDP 60 MDR DQTTHFGFRDVP+ +KQTLVNDVF SVA RYDLMNDLMSAGLHR WKD M+T L+P Sbjct: 30 MDREDQTTHFGFRDVPVADKQTLVNDVFRSVARRYDLMNDLMSAGLHRVWKDAMMTALNP 89 Query: 61 PKGDRPFALLDVAGGTGDIAFRAAKTAGAGFHATVCDINTDMLAVGRERAAKQHLDDRVS 120 P+ D PF LLDVAGGTGDIAFRAAK AG GF ATVCDIN DMLAVGRERA KQHLDDRVS Sbjct: 90 PRNDTPFLLLDVAGGTGDIAFRAAKAAGRGFRATVCDINPDMLAVGRERAIKQHLDDRVS 149 Query: 121 FVEGNAEALGFADRAFDAYTIAFGIRNVPQIDLALREAYRVLKPGSRFLCLEFSTVDVPG 180 FVEGNAE LGFADR+FDAYTIAFGIRNVP+ID ALREA+RVLKPGSRFLCLEFSTVDVPG Sbjct: 150 FVEGNAETLGFADRSFDAYTIAFGIRNVPRIDAALREAFRVLKPGSRFLCLEFSTVDVPG 209 Query: 181 LDKIYDLFSFKVIPPLGRAVTGDAESYQYLVESIRKFPRPNAFAEMIGAAGFARVKWQSL 240 LDKIYDLFSFKVIPPLGRAVTGDA+SY+YLVESIRKFP+PNAFA+MI AGFARV WQ+L Sbjct: 210 LDKIYDLFSFKVIPPLGRAVTGDADSYRYLVESIRKFPKPNAFADMIRDAGFARVTWQAL 269 Query: 241 SGGIVALHSGWRL 253 SGGIVALHSGWRL Sbjct: 270 SGGIVALHSGWRL 282 >ref|YP_001236288.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bradyrhizobium sp. BTAi1] sp|A5E888.1|UBIE_BRASB RecName: Full=Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; AltName: Full=2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; AltName: Full=Demethylmenaquinone methyltransferase gb|ABQ32382.1| demethylmenaquinone methyltransferase [Bradyrhizobium sp. BTAi1] Length = 253 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/253 (85%), Positives = 233/253 (92%) Query: 1 MDRPDQTTHFGFRDVPLGEKQTLVNDVFHSVASRYDLMNDLMSAGLHRAWKDVMITTLDP 60 MD+ DQTTHFGFRDVPLGEKQTLVNDVFHSVA RYDLMNDLMSAGLHR WKD+MI TL+P Sbjct: 1 MDQTDQTTHFGFRDVPLGEKQTLVNDVFHSVAQRYDLMNDLMSAGLHRVWKDIMINTLNP 60 Query: 61 PKGDRPFALLDVAGGTGDIAFRAAKTAGAGFHATVCDINTDMLAVGRERAAKQHLDDRVS 120 PK D PFALLDVAGGTGDI+FRAA+ AGAGFHATVCDIN DML VGR+RA KQ+L+D+VS Sbjct: 61 PKSDAPFALLDVAGGTGDISFRAARKAGAGFHATVCDINGDMLEVGRQRALKQYLEDKVS 120 Query: 121 FVEGNAEALGFADRAFDAYTIAFGIRNVPQIDLALREAYRVLKPGSRFLCLEFSTVDVPG 180 FVEGNAE L F DR+FDAYTIAFGIRNVPQI+LAL EAYRVLK G RFLCLEFSTV+VPG Sbjct: 121 FVEGNAEKLAFPDRSFDAYTIAFGIRNVPQIELALAEAYRVLKHGGRFLCLEFSTVEVPG 180 Query: 181 LDKIYDLFSFKVIPPLGRAVTGDAESYQYLVESIRKFPRPNAFAEMIGAAGFARVKWQSL 240 LDK+YDLFSF VIP LGRAVTGDAESY+YLVESIR+FPRPNAFAEMI AAGF+RV WQ+L Sbjct: 181 LDKLYDLFSFNVIPQLGRAVTGDAESYRYLVESIRQFPRPNAFAEMISAAGFSRVSWQTL 240 Query: 241 SGGIVALHSGWRL 253 SGGIVALHSGWRL Sbjct: 241 SGGIVALHSGWRL 253 >ref|YP_316661.1| ubiquinone/menaquinone biosynthesis methyltransferase [Nitrobacter winogradskyi Nb-255] gb|ABA03309.1| 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase [Nitrobacter winogradskyi Nb-255] Length = 265 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/253 (86%), Positives = 232/253 (91%) Query: 1 MDRPDQTTHFGFRDVPLGEKQTLVNDVFHSVASRYDLMNDLMSAGLHRAWKDVMITTLDP 60 MDR DQTTHFGFRDVPLG+KQTLVNDVFHSVA RYDLMNDLMS GLHR WKD MITTL+P Sbjct: 13 MDREDQTTHFGFRDVPLGDKQTLVNDVFHSVARRYDLMNDLMSGGLHRVWKDAMITTLNP 72 Query: 61 PKGDRPFALLDVAGGTGDIAFRAAKTAGAGFHATVCDINTDMLAVGRERAAKQHLDDRVS 120 P+ D PF+LLDVAGGTGDIAFRAAK AG+GF ATVCDIN DMLAVGRERA KQH D +VS Sbjct: 73 PRNDAPFSLLDVAGGTGDIAFRAAKAAGSGFQATVCDINPDMLAVGRERATKQHRDHQVS 132 Query: 121 FVEGNAEALGFADRAFDAYTIAFGIRNVPQIDLALREAYRVLKPGSRFLCLEFSTVDVPG 180 FVEGNAE L FADR FDAYTIAFGIRNVP+ID ALREA+RVL+PG RFLCLEFSTVDVPG Sbjct: 133 FVEGNAETLAFADRGFDAYTIAFGIRNVPRIDAALREAFRVLRPGGRFLCLEFSTVDVPG 192 Query: 181 LDKIYDLFSFKVIPPLGRAVTGDAESYQYLVESIRKFPRPNAFAEMIGAAGFARVKWQSL 240 LDKIYDLFSFK+IPPLGRAVTGDA+SY+YLVESIRKFP+PNAFAEMI AGFARV WQ+L Sbjct: 193 LDKIYDLFSFKMIPPLGRAVTGDADSYRYLVESIRKFPKPNAFAEMIRDAGFARVSWQAL 252 Query: 241 SGGIVALHSGWRL 253 SGGIVALHSGWRL Sbjct: 253 SGGIVALHSGWRL 265