BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0001.p (507 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236289.1| 2-octaprenylphenol hydroxylase [Bradyrhizobi... 830 0.0 ref|YP_316662.1| 2-polyprenylphenol 6-hydroxylase [Nitrobacter w... 827 0.0 ref|YP_001202297.1| ubiquinone biosynthesis protein ubiB [Bradyr... 824 0.0 ref|NP_767400.1| ubiquinone biosynthesis protein [Bradyrhizobium... 818 0.0 ref|ZP_01045146.1| 2-polyprenylphenol 6-hydroxylase [Nitrobacter... 810 0.0 >ref|YP_001236289.1| 2-octaprenylphenol hydroxylase [Bradyrhizobium sp. BTAi1] gb|ABQ32383.1| 2-octaprenylphenol hydroxylase [Bradyrhizobium sp. BTAi1] Length = 524 Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/521 (80%), Positives = 452/521 (86%), Gaps = 17/521 (3%) Query: 1 VISALTHITRLARAGFVFAREGVFGVVDPALVPPPGQLALKLARLIERRSAKSGPRLSRA 60 +ISALTHITRLARA FVFAREGVFG VDP+L PPPGQLALKLARL+ER AKSGPRLSRA Sbjct: 1 MISALTHITRLARAAFVFAREGVFGAVDPSLAPPPGQLALKLARLVERPGAKSGPRLSRA 60 Query: 61 LTRLGPAYLKLGQFLATR-----------------XLPPFAQEAAETVITQSLERPLAQA 103 L R+GPAYLKLGQFLATR LPPF Q AE VI +LERP++Q Sbjct: 61 LERMGPAYLKLGQFLATRPDVVGVVMARDLESLQDRLPPFPQAEAEAVIATALERPISQV 120 Query: 104 FVHLGPAVAAASIAQVHRGEIERDGVRHPVAVKVLRPNVAARFRRDLSDFFFVAHKAEAH 163 FV L VAAASIAQVHRGE+ERDG+RH VAVKVLRPNVAARFRRDLSDFFFVA KAEAH Sbjct: 121 FVSLSAPVAAASIAQVHRGEVERDGIRHAVAVKVLRPNVAARFRRDLSDFFFVAEKAEAH 180 Query: 164 SAEARRLRLIEVINTMSRSVAMEMDLRLEAAALSEMAENTRDDPDFRVPAVDWDRTAHSV 223 S+EARRLRL+EVINTMSRSVAMEMDLRLEAAALSEMAENTRDDPDFRVP VDWDRTA++V Sbjct: 181 SSEARRLRLVEVINTMSRSVAMEMDLRLEAAALSEMAENTRDDPDFRVPTVDWDRTANNV 240 Query: 224 LTMEWIDGIALNDHVRLTQAEVDLPDLGRKVIQSFLRHALRDGFFHADMHPGNLFLDEAG 283 LTMEWIDGIALNDH RL QA+VDLPD+GRKVIQSFLRHALRDGFFHADMHPGNLFLD+ G Sbjct: 241 LTMEWIDGIALNDHARLAQADVDLPDIGRKVIQSFLRHALRDGFFHADMHPGNLFLDKEG 300 Query: 284 RLVAVDFGIMGRLGLKERRFLAEILLGFITRDYRRVAEVHFEAGYVPGHHSVENFAQAIR 343 RLVAVDFGIMGRLG+KERRFLAEILLGFITRDYRRVAEVHFEAGYVP HHSVENFAQAIR Sbjct: 301 RLVAVDFGIMGRLGMKERRFLAEILLGFITRDYRRVAEVHFEAGYVPPHHSVENFAQAIR 360 Query: 344 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDMQTRPELILLQKTMVVVEGVARGFDPKLD 403 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDM+TRPELILLQKTMVVVEGVARGFDPKLD Sbjct: 361 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDMRTRPELILLQKTMVVVEGVARGFDPKLD 420 Query: 404 IWKIADPVVREWITQNLGPAGRIQGAISGAGELGRILANLPSIANRAVTVLEQLETMTLE 463 IWKIADPVVREWI +NLGP GRI+GA++G GEL R+ A LP +A RA VLE +ETMT + Sbjct: 421 IWKIADPVVREWIERNLGPIGRIEGAVTGIGELARLTATLPVLAARAAAVLEHMETMTRD 480 Query: 464 GHMLSSDSIDEMARAEARKARVQTVGLWVIAIASIAIFFAI 504 G LS ++I M R E +K+R + + LWVIA+ I I FA+ Sbjct: 481 GLRLSPETIAAMGRTEGKKSRWRAIALWVIALTFIGILFAV 521 >ref|YP_316662.1| 2-polyprenylphenol 6-hydroxylase [Nitrobacter winogradskyi Nb-255] gb|ABA03310.1| 2-octaprenylphenol hydroxylase [Nitrobacter winogradskyi Nb-255] Length = 526 Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/521 (78%), Positives = 461/521 (88%), Gaps = 17/521 (3%) Query: 1 VISALTHITRLARAGFVFAREGVFGVVDPALVPPPGQLALKLARLIERRSAKSGPRLSRA 60 +ISAL H+ RLARA FVFAREGVFGVVDP+LVP PGQLAL++ARLIERR AKSG RL+RA Sbjct: 1 MISALGHVARLARAAFVFAREGVFGVVDPSLVPAPGQLALRMARLIERRGAKSGSRLTRA 60 Query: 61 LTRLGPAYLKLGQFLATR-----------------XLPPFAQEAAETVITQSLERPLAQA 103 LTRLGPAYLKLGQFLATR LPPF+Q AE V+ +LE+P+A A Sbjct: 61 LTRLGPAYLKLGQFLATRPDVIGVAMARDLESLQDRLPPFSQAEAEAVVAAALEKPVADA 120 Query: 104 FVHLGPAVAAASIAQVHRGEIERDGVRHPVAVKVLRPNVAARFRRDLSDFFFVAHKAEAH 163 F + GP+VAAASIAQVHRGE+E++GVR VA+KVLRPNVA RFRRDLSDFFFVA+ AEAH Sbjct: 121 FANFGPSVAAASIAQVHRGEVEKNGVRRQVAIKVLRPNVATRFRRDLSDFFFVANNAEAH 180 Query: 164 SAEARRLRLIEVINTMSRSVAMEMDLRLEAAALSEMAENTRDDPDFRVPAVDWDRTAHSV 223 SAEARRLRL+EVINTMSRSVAMEMDLRLEAAALSEMAENTR+DPDFRVP VDWDRT H+V Sbjct: 181 SAEARRLRLVEVINTMSRSVAMEMDLRLEAAALSEMAENTRNDPDFRVPEVDWDRTTHNV 240 Query: 224 LTMEWIDGIALNDHVRLTQAEVDLPDLGRKVIQSFLRHALRDGFFHADMHPGNLFLDEAG 283 LTMEWIDGIALNDH RL Q++ DLP+LGRKVIQSFLRHALRDGFFHADMHPGNLFLD +G Sbjct: 241 LTMEWIDGIALNDHARLAQSKADLPELGRKVIQSFLRHALRDGFFHADMHPGNLFLDGSG 300 Query: 284 RLVAVDFGIMGRLGLKERRFLAEILLGFITRDYRRVAEVHFEAGYVPGHHSVENFAQAIR 343 RLVAVDFGIMGRLGLKERRFLAEILLGFITRDYRRVAEVHFEAGYVPGHHSVENFAQAIR Sbjct: 301 RLVAVDFGIMGRLGLKERRFLAEILLGFITRDYRRVAEVHFEAGYVPGHHSVENFAQAIR 360 Query: 344 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDMQTRPELILLQKTMVVVEGVARGFDPKLD 403 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDMQTRPELILLQKTMVVVEGVAR FDPKLD Sbjct: 361 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDMQTRPELILLQKTMVVVEGVARSFDPKLD 420 Query: 404 IWKIADPVVREWITQNLGPAGRIQGAISGAGELGRILANLPSIANRAVTVLEQLETMTLE 463 IW +ADPVVREWIT+NLGP GR+QGAI+GAGELGR+LA+LP+IA+R+V VLEQ+ETMT + Sbjct: 421 IWTVADPVVREWITENLGPLGRMQGAIAGAGELGRLLASLPAIASRSVAVLEQVETMTRD 480 Query: 464 GHMLSSDSIDEMARAEARKARVQTVGLWVIAIASIAIFFAI 504 G +L+ +++ +A A AR+ R +T+ LW+IA+ + I +A+ Sbjct: 481 GLVLAPETVATLACARARQNRWRTIALWIIAVTLLGILWAV 521 >ref|YP_001202297.1| ubiquinone biosynthesis protein ubiB [Bradyrhizobium sp. ORS 278] emb|CAL74047.1| Ubiquinone biosynthesis protein ubiB [Bradyrhizobium sp. ORS 278] Length = 524 Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/521 (79%), Positives = 451/521 (86%), Gaps = 17/521 (3%) Query: 1 VISALTHITRLARAGFVFAREGVFGVVDPALVPPPGQLALKLARLIERRSAKSGPRLSRA 60 +ISALTHITRLARA VFAREGVFGVVDP+L PPPGQ+ALKLARL+ER AKSGPRLSRA Sbjct: 1 MISALTHITRLARAALVFAREGVFGVVDPSLAPPPGQIALKLARLVERPGAKSGPRLSRA 60 Query: 61 LTRLGPAYLKLGQFLATR-----------------XLPPFAQEAAETVITQSLERPLAQA 103 L R+GPAYLKLGQFLATR LPPF Q AE VI +LERP++Q Sbjct: 61 LERMGPAYLKLGQFLATRPDVVGVVMARDLESLQDRLPPFPQAEAEAVIATALERPISQL 120 Query: 104 FVHLGPAVAAASIAQVHRGEIERDGVRHPVAVKVLRPNVAARFRRDLSDFFFVAHKAEAH 163 + LGP VAAASIAQVHRGE+ERDG+RH VAVKVLRPNVAARFRRDL+DFFFVA KAEAH Sbjct: 121 YTSLGPPVAAASIAQVHRGEVERDGIRHAVAVKVLRPNVAARFRRDLADFFFVAEKAEAH 180 Query: 164 SAEARRLRLIEVINTMSRSVAMEMDLRLEAAALSEMAENTRDDPDFRVPAVDWDRTAHSV 223 SAEARRLRL+EVINTMSRSVAMEMDLRLEAAALSEMAEN +DDPDFRVPAVDWDRTA++V Sbjct: 181 SAEARRLRLVEVINTMSRSVAMEMDLRLEAAALSEMAENIKDDPDFRVPAVDWDRTANNV 240 Query: 224 LTMEWIDGIALNDHVRLTQAEVDLPDLGRKVIQSFLRHALRDGFFHADMHPGNLFLDEAG 283 LTMEWIDGIALNDH RL QA VDLPD+GRKVIQSFLRHALRDGFFHADMHPGNLFLD+ G Sbjct: 241 LTMEWIDGIALNDHARLAQANVDLPDVGRKVIQSFLRHALRDGFFHADMHPGNLFLDKQG 300 Query: 284 RLVAVDFGIMGRLGLKERRFLAEILLGFITRDYRRVAEVHFEAGYVPGHHSVENFAQAIR 343 RLVAVDFGIMGRLG+KERRFLAEILLGFITRDYRRVAEVHFEAGYVP HHSVENFAQAIR Sbjct: 301 RLVAVDFGIMGRLGMKERRFLAEILLGFITRDYRRVAEVHFEAGYVPPHHSVENFAQAIR 360 Query: 344 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDMQTRPELILLQKTMVVVEGVARGFDPKLD 403 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDM+TRPELILLQKTMVVVEGVARGFDP+LD Sbjct: 361 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDMRTRPELILLQKTMVVVEGVARGFDPRLD 420 Query: 404 IWKIADPVVREWITQNLGPAGRIQGAISGAGELGRILANLPSIANRAVTVLEQLETMTLE 463 IWK+ADPVVREWI +NLG GRI+GA++G GEL RI + LP +A RA VLE LETMT + Sbjct: 421 IWKVADPVVREWIERNLGSLGRIEGAVTGIGELARITSTLPVLAARAAAVLENLETMTRD 480 Query: 464 GHMLSSDSIDEMARAEARKARVQTVGLWVIAIASIAIFFAI 504 G LS ++I M R E +K+R + + LWVIA+ I I FA+ Sbjct: 481 GLRLSPETIAAMGRTEGKKSRWRAIALWVIALTFIGILFAV 521 >ref|NP_767400.1| ubiquinone biosynthesis protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46025.1| ubiquinone biosynthesis protein [Bradyrhizobium japonicum USDA 110] Length = 524 Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/522 (78%), Positives = 444/522 (85%), Gaps = 17/522 (3%) Query: 1 VISALTHITRLARAGFVFAREGVFGVVDPALVPPPGQLALKLARLIERRSAKSGPRLSRA 60 +ISA+TH RL RA FVFAREGVFG VDP+LVPPPGQLALKLAR++ERR K GPRLSRA Sbjct: 1 MISAITHTARLMRAAFVFAREGVFGSVDPSLVPPPGQLALKLARIVERRGPKHGPRLSRA 60 Query: 61 LTRLGPAYLKLGQFLATR-----------------XLPPFAQEAAETVITQSLERPLAQA 103 LTR+GPAYLKLGQFLATR LPPF+Q AE I SLERPL Sbjct: 61 LTRMGPAYLKLGQFLATRPDVVGVIMARDLESLQDRLPPFSQAEAEAAIAASLERPLKDV 120 Query: 104 FVHLGPAVAAASIAQVHRGEIERDGVRHPVAVKVLRPNVAARFRRDLSDFFFVAHKAEAH 163 F LGP VAAASIAQVHRGE+ RDG+R VAVKVLRPNVA+RFRRDLSDFF+VAHKAE + Sbjct: 121 FASLGPPVAAASIAQVHRGEVVRDGIRKAVAVKVLRPNVASRFRRDLSDFFYVAHKAETY 180 Query: 164 SAEARRLRLIEVINTMSRSVAMEMDLRLEAAALSEMAENTRDDPDFRVPAVDWDRTAHSV 223 SAEARRLRLIEVINTMSRSVAMEMDLRLEAAA+SEMAENT DD DFRVP VDWDRT H+V Sbjct: 181 SAEARRLRLIEVINTMSRSVAMEMDLRLEAAAMSEMAENTGDDLDFRVPTVDWDRTTHNV 240 Query: 224 LTMEWIDGIALNDHVRLTQAEVDLPDLGRKVIQSFLRHALRDGFFHADMHPGNLFLDEAG 283 LTMEWIDGIALNDH RL +A+VDLPDLGRKVIQSFLRHALRDGFFHADMHPGNLFLD+ G Sbjct: 241 LTMEWIDGIALNDHKRLAEAQVDLPDLGRKVIQSFLRHALRDGFFHADMHPGNLFLDDTG 300 Query: 284 RLVAVDFGIMGRLGLKERRFLAEILLGFITRDYRRVAEVHFEAGYVPGHHSVENFAQAIR 343 RLVAVDFGIMGRLG+KERRFLAEILLGFITRDYRRVAEVHFEAGYVP HHSVENFAQAIR Sbjct: 301 RLVAVDFGIMGRLGMKERRFLAEILLGFITRDYRRVAEVHFEAGYVPAHHSVENFAQAIR 360 Query: 344 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDMQTRPELILLQKTMVVVEGVARGFDPKLD 403 AIGEPIHNRTAEEISMA+LLTLLLEVTGLFDM TRPELILLQKTMVVVEGVARGFDP+LD Sbjct: 361 AIGEPIHNRTAEEISMARLLTLLLEVTGLFDMTTRPELILLQKTMVVVEGVARGFDPRLD 420 Query: 404 IWKIADPVVREWITQNLGPAGRIQGAISGAGELGRILANLPSIANRAVTVLEQLETMTLE 463 IWK ADPVVREWI +NLGP GR+QGA++G G+L R+L LP IA R+V VLEQLETMT E Sbjct: 421 IWKTADPVVREWIERNLGPIGRVQGALTGGGDLARVLMRLPDIAQRSVAVLEQLETMTRE 480 Query: 464 GHMLSSDSIDEMARAEARKARVQTVGLWVIAIASIAIFFAIR 505 G LS +SI M R+E RK R +TV LW+IA I I A+R Sbjct: 481 GLRLSPESIAAMGRSEGRKNRWRTVALWIIAATFIGILIAVR 522 >ref|ZP_01045146.1| 2-polyprenylphenol 6-hydroxylase [Nitrobacter sp. Nb-311A] gb|EAQ37151.1| 2-polyprenylphenol 6-hydroxylase [Nitrobacter sp. Nb-311A] Length = 522 Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/510 (80%), Positives = 451/510 (88%), Gaps = 17/510 (3%) Query: 1 VISALTHITRLARAGFVFAREGVFGVVDPALVPPPGQLALKLARLIERRSAKSGPRLSRA 60 +ISAL H+ RLARA FVFAREGVFGVVDP+LVP PGQLAL++ARLIERR AKSG RL+RA Sbjct: 1 MISALAHVARLARAAFVFAREGVFGVVDPSLVPAPGQLALRMARLIERRGAKSGSRLTRA 60 Query: 61 LTRLGPAYLKLGQFLATR-----------------XLPPFAQEAAETVITQSLERPLAQA 103 LTRLGPAYLKLGQFLATR LPPF+Q AE V+ +LE+P+A A Sbjct: 61 LTRLGPAYLKLGQFLATRPDVIGVAMARDLESLQDRLPPFSQAEAEAVVAAALEKPVANA 120 Query: 104 FVHLGPAVAAASIAQVHRGEIERDGVRHPVAVKVLRPNVAARFRRDLSDFFFVAHKAEAH 163 F GP+VAAASIAQVHRGE+E+DGVR VA+KVLRPNVAARFRRDLSDFFFVA+KAEAH Sbjct: 121 FASFGPSVAAASIAQVHRGEVEKDGVRRQVAIKVLRPNVAARFRRDLSDFFFVANKAEAH 180 Query: 164 SAEARRLRLIEVINTMSRSVAMEMDLRLEAAALSEMAENTRDDPDFRVPAVDWDRTAHSV 223 SAEARRLRLIEVINTMSRSVAMEMDLRLEAAALSEMAENTRDDPDFRVP VDWDRT H+V Sbjct: 181 SAEARRLRLIEVINTMSRSVAMEMDLRLEAAALSEMAENTRDDPDFRVPEVDWDRTTHNV 240 Query: 224 LTMEWIDGIALNDHVRLTQAEVDLPDLGRKVIQSFLRHALRDGFFHADMHPGNLFLDEAG 283 LTMEWIDGIALNDH RL Q++ DLP+LGRKVIQSFLRHALRDGFFHADMHPGNLFLD +G Sbjct: 241 LTMEWIDGIALNDHARLAQSKADLPELGRKVIQSFLRHALRDGFFHADMHPGNLFLDGSG 300 Query: 284 RLVAVDFGIMGRLGLKERRFLAEILLGFITRDYRRVAEVHFEAGYVPGHHSVENFAQAIR 343 RLVAVDFGIMGRLGLKERRFLAEILLGFI RDYRRVAEVHFEAGYVPGHHSVENFAQAIR Sbjct: 301 RLVAVDFGIMGRLGLKERRFLAEILLGFIIRDYRRVAEVHFEAGYVPGHHSVENFAQAIR 360 Query: 344 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDMQTRPELILLQKTMVVVEGVARGFDPKLD 403 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDMQTRPELILLQKTMVVVEGVAR FDPKLD Sbjct: 361 AIGEPIHNRTAEEISMAKLLTLLLEVTGLFDMQTRPELILLQKTMVVVEGVARSFDPKLD 420 Query: 404 IWKIADPVVREWITQNLGPAGRIQGAISGAGELGRILANLPSIANRAVTVLEQLETMTLE 463 IW +ADPVVREWIT+NLGP GR+QGAI+GAGELGR+LA LP+IA+R++ VLE+LE MT E Sbjct: 421 IWTVADPVVREWITENLGPMGRMQGAIAGAGELGRVLAGLPAIASRSMAVLERLEIMTRE 480 Query: 464 GHMLSSDSIDEMARAEARKARVQTVGLWVI 493 G +L+ +++ +ARA AR+ R + LWVI Sbjct: 481 GLVLAPETVAALARARARQNRWSILALWVI 510