BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0039.p (441 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771552.1| NADH dehydrogenase I subunit F [Bradyrhizobium ... 879 0.0 ref|YP_001206156.1| NADH dehydrogenase I subunit F [Bradyrhizobi... 877 0.0 ref|YP_001240493.1| NADH dehydrogenase I subunit F [Bradyrhizobi... 873 0.0 ref|YP_318494.1| NADH dehydrogenase I subunit F [Nitrobacter win... 854 0.0 ref|ZP_01047986.1| NADH-quinone oxidoreductase, F subunit [Nitro... 851 0.0 >ref|NP_771552.1| NADH dehydrogenase I subunit F [Bradyrhizobium japonicum USDA 110] dbj|BAC50177.1| NADH ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum USDA 110] Length = 441 Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/441 (95%), Positives = 433/441 (98%) Query: 1 MLDDKDRIFKNLYGLHDWGLEGARRRGAWDGTKGIIDKGRDWIINEMKASGLRGRGGAGF 60 ML+DKDRIFKNLYGLHDWGLEGARRRGAWDGTK IIDKGRDWIINEMKASGLRGRGGAGF Sbjct: 1 MLEDKDRIFKNLYGLHDWGLEGARRRGAWDGTKNIIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 PTGMKWSFMPKESKDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120 PTG+KWSFMPKES DGRPSYLVVNADESEPGTCKDREIMRHDPHLL+EGCL+AS AM AH Sbjct: 61 PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASCAMNAH 120 Query: 121 ACYIYIRGEFIRERERLQAAIDQAYEAKLVGKDNVNGWPFDIYVAHGAGAYICGEETALL 180 ACYIY+RGEFIRERE LQAAIDQAYEAKLVGKDNVNGWPFDIYVAHGAGAYICGEETALL Sbjct: 121 ACYIYVRGEFIREREHLQAAIDQAYEAKLVGKDNVNGWPFDIYVAHGAGAYICGEETALL 180 Query: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 Query: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWGNLKAVIPGGSSVRMVPAEQII 300 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGW NLKAVIPGGSSVRMVPAEQII Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300 Query: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEERIDQY 420 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420 Query: 421 SHKADLDDQGVRDPMHMVAAE 441 SHK+D+DD GVRDP++MVAAE Sbjct: 421 SHKSDIDDIGVRDPVNMVAAE 441 >ref|YP_001206156.1| NADH dehydrogenase I subunit F [Bradyrhizobium sp. ORS 278] emb|CAL77931.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) [Bradyrhizobium sp. ORS 278] Length = 441 Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/441 (95%), Positives = 429/441 (97%) Query: 1 MLDDKDRIFKNLYGLHDWGLEGARRRGAWDGTKGIIDKGRDWIINEMKASGLRGRGGAGF 60 MLDDKDRIF NLYGL DWGLEGARRRG+WDGTKG+IDKGRDWIINEMKASGLRGRGGAGF Sbjct: 1 MLDDKDRIFTNLYGLQDWGLEGARRRGSWDGTKGLIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 PTGMKWSFMPKESKDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120 PTG+KWSFMPKES DGRPSYLVVNADESEPGTCKDREIMRHDPH LVEGCLLASFAM AH Sbjct: 61 PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLASFAMNAH 120 Query: 121 ACYIYIRGEFIRERERLQAAIDQAYEAKLVGKDNVNGWPFDIYVAHGAGAYICGEETALL 180 CYIY+RGEFIRERERLQAAIDQAYEAKLVGKDNV+GWPFDIYVAHGAGAYICGEETALL Sbjct: 121 TCYIYVRGEFIRERERLQAAIDQAYEAKLVGKDNVHGWPFDIYVAHGAGAYICGEETALL 180 Query: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAP ILRRGA+WFAGIGRPNNVGT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGASWFAGIGRPNNVGT 240 Query: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWGNLKAVIPGGSSVRMVPAEQII 300 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGW NLKAVIPGGSSVRMVPAEQII Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300 Query: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEERIDQY 420 RVLTRMAEGRAHKREIDMLLEVTKQ+EGHTICALGDAAAWPIQGLI HFRHEIE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLITHFRHEIEARIDQY 420 Query: 421 SHKADLDDQGVRDPMHMVAAE 441 SHKAD+DD GVRDP HMVAAE Sbjct: 421 SHKADVDDVGVRDPAHMVAAE 441 >ref|YP_001240493.1| NADH dehydrogenase I subunit F [Bradyrhizobium sp. BTAi1] gb|ABQ36587.1| NADH dehydrogenase subunit F [Bradyrhizobium sp. BTAi1] Length = 441 Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/441 (94%), Positives = 430/441 (97%) Query: 1 MLDDKDRIFKNLYGLHDWGLEGARRRGAWDGTKGIIDKGRDWIINEMKASGLRGRGGAGF 60 ML+DKDRIF NLYGLHDWGLEGARRRG+WDGTKG+IDKGRDWIINEMKASGLRGRGGAGF Sbjct: 1 MLEDKDRIFTNLYGLHDWGLEGARRRGSWDGTKGLIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 PTGMKWSFMPKESKDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120 PTG+KWSFMPKES DGRPSYLVVNADESEPGTCKDREIMRHDPH LVEGCLLASFAM AH Sbjct: 61 PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLASFAMNAH 120 Query: 121 ACYIYIRGEFIRERERLQAAIDQAYEAKLVGKDNVNGWPFDIYVAHGAGAYICGEETALL 180 ACYIY+RGEFIRERERLQAAIDQAYEA L+GK+N++GWPFD+YVAHGAGAYICGEETALL Sbjct: 121 ACYIYVRGEFIRERERLQAAIDQAYEANLIGKNNIHGWPFDLYVAHGAGAYICGEETALL 180 Query: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAP ILRRGA+WFAGIGRPNNVGT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGASWFAGIGRPNNVGT 240 Query: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWGNLKAVIPGGSSVRMVPAEQII 300 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGW NLKAVIPGGSSVRMVPAEQII Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300 Query: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEERIDQY 420 RVLTRMAEGRAHKREIDMLLEVTKQ+EGHTICALGDAAAWPIQGLI HFRHEIE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLITHFRHEIEARIDQY 420 Query: 421 SHKADLDDQGVRDPMHMVAAE 441 SHKAD+DD GVRDP HMVAAE Sbjct: 421 SHKADVDDVGVRDPAHMVAAE 441 >ref|YP_318494.1| NADH dehydrogenase I subunit F [Nitrobacter winogradskyi Nb-255] gb|ABA05142.1| NADH dehydrogenase subunit F [Nitrobacter winogradskyi Nb-255] Length = 441 Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/441 (92%), Positives = 426/441 (96%) Query: 1 MLDDKDRIFKNLYGLHDWGLEGARRRGAWDGTKGIIDKGRDWIINEMKASGLRGRGGAGF 60 MLDDKDRIF+NLYGL DW L GARRRGAWDGTK I+ KGRDWI++EMKASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTKAIVGKGRDWIVSEMKASGLRGRGGAGF 60 Query: 61 PTGMKWSFMPKESKDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120 PTGMKWSFMPK++ DGRPSYLVVNADESEPGTCKDREIMRHDPHLL+EGCLLA MGAH Sbjct: 61 PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120 Query: 121 ACYIYIRGEFIRERERLQAAIDQAYEAKLVGKDNVNGWPFDIYVAHGAGAYICGEETALL 180 A YIYIRGEFIRERERLQAAID+AYEA+L+GKDN++G+PFD+YVAHGAGAYICGEETALL Sbjct: 121 AGYIYIRGEFIRERERLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180 Query: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 Query: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWGNLKAVIPGGSSVRMVPAEQII 300 KLFC+SGHVERPCNVEEAMGI FRELI+ HCGGIRGGWGNLKAVIPGGSSVRMVPAEQII Sbjct: 241 KLFCVSGHVERPCNVEEAMGITFRELIDTHCGGIRGGWGNLKAVIPGGSSVRMVPAEQII 300 Query: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEERIDQY 420 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEERIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEERIDQY 420 Query: 421 SHKADLDDQGVRDPMHMVAAE 441 SHKAD DDQG+ DP HMVAAE Sbjct: 421 SHKADRDDQGILDPAHMVAAE 441 >ref|ZP_01047986.1| NADH-quinone oxidoreductase, F subunit [Nitrobacter sp. Nb-311A] gb|EAQ34044.1| NADH-quinone oxidoreductase, F subunit [Nitrobacter sp. Nb-311A] Length = 441 Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/441 (92%), Positives = 424/441 (96%) Query: 1 MLDDKDRIFKNLYGLHDWGLEGARRRGAWDGTKGIIDKGRDWIINEMKASGLRGRGGAGF 60 MLDDKDRIF+NLYGL DW L GARRRGAWDGTK I+DKGRDWI++EMKASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTKAIVDKGRDWIVSEMKASGLRGRGGAGF 60 Query: 61 PTGMKWSFMPKESKDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120 PTGMKWSFMPK++ DGRPSYLVVNADESEPGTCKDREIMRHDPHLL+EGCLLA MGAH Sbjct: 61 PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120 Query: 121 ACYIYIRGEFIRERERLQAAIDQAYEAKLVGKDNVNGWPFDIYVAHGAGAYICGEETALL 180 A YIYIRGEFIRERERLQAAID+AYEA+L+GKDN++G+PFD+YVAHGAGAYICGEETALL Sbjct: 121 AGYIYIRGEFIRERERLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180 Query: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFA IGRPNNVGT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAAIGRPNNVGT 240 Query: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWGNLKAVIPGGSSVRMVPAEQII 300 KLFCISGHVERPCNVEEAMGI FRELI+ HCGGIRGGW NLKAVIPGGSSVRMVPAEQII Sbjct: 241 KLFCISGHVERPCNVEEAMGITFRELIDTHCGGIRGGWNNLKAVIPGGSSVRMVPAEQII 300 Query: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEERIDQY 420 RVLTRMAEGRAHKREIDMLLEVTKQ+EGHTICALGDAAAWPIQGLIAHFRHEIE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420 Query: 421 SHKADLDDQGVRDPMHMVAAE 441 SHKAD DDQG+ DP HMVAAE Sbjct: 421 SHKADRDDQGILDPAHMVAAE 441