BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0037.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01047987.1| ATP synthase subunit E [Nitrobacter sp. Nb-31... 374 e-102 ref|NP_771554.1| NADH dehydrogenase subunit E [Bradyrhizobium ja... 373 e-101 ref|YP_577468.1| NADH dehydrogenase subunit E [Nitrobacter hambu... 371 e-101 ref|YP_002288913.1| NADH-quinone oxidoreductase subunit e 1 [Oli... 365 2e-99 ref|YP_318495.1| NADH dehydrogenase subunit E [Nitrobacter winog... 365 3e-99 >ref|ZP_01047987.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A] gb|EAQ34045.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A] Length = 251 Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 171/200 (85%), Positives = 186/200 (93%) Query: 1 MSVRRLAPKELQPASFTFTDENLAWAKKQIEKYPPGRQASAAIAILWRVQEQHDGWVSEA 60 MSVRRLAPKE QP SF F++ENLAWAKKQI +YP GRQASAAIAILWR QEQH GW+SEA Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPEGRQASAAIAILWRAQEQHGGWISEA 60 Query: 61 AIRAVADLLEMPHIRMLEIATFYTMFQLSPVGKKAHVQVCGTTPCRLRGAADLIEVCQHR 120 AIRAVAD+L+MP+IRMLEIATFYTMFQL PVGKKAH+QVCGTTPCRLRGA D++ VC+ R Sbjct: 61 AIRAVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKSR 120 Query: 121 IHHDPFQLSKDGNFSWEEVECLGACVNAPMVLIWKDTYEDLTKESFGKVLDGFAAGNPPK 180 IHH+PF LSKDG+FSWEEVECLG+CVNAPMVLIWKDTYEDLTKESFGKVLDGFA+GNPPK Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKESFGKVLDGFASGNPPK 180 Query: 181 PGPQIDRQFSAPAGGPTTLK 200 PGPQIDRQFSAP GGPTTL Sbjct: 181 PGPQIDRQFSAPVGGPTTLN 200 >ref|NP_771554.1| NADH dehydrogenase subunit E [Bradyrhizobium japonicum USDA 110] dbj|BAC50179.1| NADH ubiquinone oxidoreductase chain E [Bradyrhizobium japonicum USDA 110] Length = 203 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/203 (85%), Positives = 188/203 (92%) Query: 1 MSVRRLAPKELQPASFTFTDENLAWAKKQIEKYPPGRQASAAIAILWRVQEQHDGWVSEA 60 MSVRRLAPKE+QPASF FT+ENLA+AK+QI KYP GRQASA IAILWR QEQHDGWVSEA Sbjct: 1 MSVRRLAPKEVQPASFAFTEENLAFAKQQIAKYPAGRQASAVIAILWRAQEQHDGWVSEA 60 Query: 61 AIRAVADLLEMPHIRMLEIATFYTMFQLSPVGKKAHVQVCGTTPCRLRGAADLIEVCQHR 120 AIR +AD+L+MP+IR+LE+ATFYTMFQL+PVGKKAHVQVCGTTPCRLRGA DLI VC+HR Sbjct: 61 AIRVIADMLDMPYIRVLEVATFYTMFQLAPVGKKAHVQVCGTTPCRLRGAEDLIHVCEHR 120 Query: 121 IHHDPFQLSKDGNFSWEEVECLGACVNAPMVLIWKDTYEDLTKESFGKVLDGFAAGNPPK 180 IHH+PF LSKDGNFSWEEVECLGACVNAPMVLI KDTYEDLTKESFGKVLDGFA+GNPPK Sbjct: 121 IHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKESFGKVLDGFASGNPPK 180 Query: 181 PGPQIDRQFSAPAGGPTTLKETT 203 PGPQ RQFSAP GPTTLKE T Sbjct: 181 PGPQNGRQFSAPITGPTTLKEIT 203 >ref|YP_577468.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14] gb|ABE63008.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14] Length = 228 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 170/200 (85%), Positives = 186/200 (93%) Query: 1 MSVRRLAPKELQPASFTFTDENLAWAKKQIEKYPPGRQASAAIAILWRVQEQHDGWVSEA 60 MSVRRLAPKE QP SF F++ENLAWAKKQI +YP GRQASAAIAILWR QEQHDGWVSEA Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIGQYPAGRQASAAIAILWRAQEQHDGWVSEA 60 Query: 61 AIRAVADLLEMPHIRMLEIATFYTMFQLSPVGKKAHVQVCGTTPCRLRGAADLIEVCQHR 120 AIR VAD+L+MP+IRMLEIATFYTMFQL PVGKKAH+QVCGTTPCRLRGA D++ VC++R Sbjct: 61 AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKNR 120 Query: 121 IHHDPFQLSKDGNFSWEEVECLGACVNAPMVLIWKDTYEDLTKESFGKVLDGFAAGNPPK 180 IHH+PF LSKDG+FSWEEVECLG+CVNAPMVLIWKDTYEDLTKE+FGKVLDGFA+G PPK Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQPPK 180 Query: 181 PGPQIDRQFSAPAGGPTTLK 200 PGPQIDRQFSAP GGPTTL Sbjct: 181 PGPQIDRQFSAPVGGPTTLN 200 >ref|YP_002288913.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha carboxidovorans OM5] ref|YP_004633042.1| NADH-quinone oxidoreductase subunit E 1 [Oligotropha carboxidovorans OM5] gb|ACI93048.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha carboxidovorans OM5] gb|AEI03224.1| NADH-quinone oxidoreductase subunit E 1 [Oligotropha carboxidovorans OM4] gb|AEI06801.1| NADH-quinone oxidoreductase subunit E 1 [Oligotropha carboxidovorans OM5] Length = 250 Score = 365 bits (937), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 169/203 (83%), Positives = 185/203 (91%) Query: 1 MSVRRLAPKELQPASFTFTDENLAWAKKQIEKYPPGRQASAAIAILWRVQEQHDGWVSEA 60 M+VRRLAPKELQP SF FTDENLAWAK+QIEK+PPGRQ SA I ILWRVQEQ++GWVSEA Sbjct: 1 MAVRRLAPKELQPESFVFTDENLAWAKQQIEKFPPGRQQSAVIPILWRVQEQNEGWVSEA 60 Query: 61 AIRAVADLLEMPHIRMLEIATFYTMFQLSPVGKKAHVQVCGTTPCRLRGAADLIEVCQHR 120 AIRAVADLL M HIR+LEIATFYTMFQLSPVGKKAHVQVCGTTPC LRGA DL+EVC+HR Sbjct: 61 AIRAVADLLGMAHIRVLEIATFYTMFQLSPVGKKAHVQVCGTTPCMLRGAKDLVEVCKHR 120 Query: 121 IHHDPFQLSKDGNFSWEEVECLGACVNAPMVLIWKDTYEDLTKESFGKVLDGFAAGNPPK 180 IHHDP +S+DG+FSWEEVECLGACVNAPMV+IWKDTYEDLT E+ KVLDGFA+GNPPK Sbjct: 121 IHHDPGHVSEDGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFASGNPPK 180 Query: 181 PGPQIDRQFSAPAGGPTTLKETT 203 PGPQIDRQF+AP GGP LK+ T Sbjct: 181 PGPQIDRQFAAPVGGPRVLKDIT 203 >ref|YP_318495.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255] gb|ABA05143.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255] Length = 250 Score = 365 bits (936), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 166/200 (83%), Positives = 184/200 (92%) Query: 1 MSVRRLAPKELQPASFTFTDENLAWAKKQIEKYPPGRQASAAIAILWRVQEQHDGWVSEA 60 MSVRRLAPKE QP SF F++ENLAWAKKQI +YP GRQASAAIAILWR QEQ+ GW+SEA Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPAGRQASAAIAILWRAQEQNGGWISEA 60 Query: 61 AIRAVADLLEMPHIRMLEIATFYTMFQLSPVGKKAHVQVCGTTPCRLRGAADLIEVCQHR 120 AIR VAD+L+MP+IRMLEIATFYTMFQL PVG+KAH+QVCGTTPCRLRGA D++ VC+ R Sbjct: 61 AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGRKAHIQVCGTTPCRLRGAEDILAVCKSR 120 Query: 121 IHHDPFQLSKDGNFSWEEVECLGACVNAPMVLIWKDTYEDLTKESFGKVLDGFAAGNPPK 180 IHH+PF LSKDG+FSWEEVECLG+CVNAPMVLIWKDTYEDLTKE+FGKVLDGFA+G PPK Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQPPK 180 Query: 181 PGPQIDRQFSAPAGGPTTLK 200 PGPQIDRQFSAP GGPTTL Sbjct: 181 PGPQIDRQFSAPVGGPTTLN 200