BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0036.p (398 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771556.1| NADH dehydrogenase subunit D [Bradyrhizobium ja... 803 0.0 ref|YP_001240497.1| NADH dehydrogenase subunit D [Bradyrhizobium... 774 0.0 ref|ZP_08629626.1| NADH-ubiquinone oxidoreductase chain D [Brady... 773 0.0 ref|YP_001206160.1| NADH dehydrogenase subunit D [Bradyrhizobium... 772 0.0 ref|YP_318497.1| NADH dehydrogenase subunit D [Nitrobacter winog... 771 0.0 >ref|NP_771556.1| NADH dehydrogenase subunit D [Bradyrhizobium japonicum USDA 110] sp|Q89KI9.1|NUOD_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D dbj|BAC50181.1| NADH ubiquinone oxidoreductase chain D [Bradyrhizobium japonicum USDA 110] Length = 398 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/398 (96%), Positives = 392/398 (98%) Query: 1 MNEQPQNLRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTY 60 MNEQP+NLRNFTINFGPQHPAAHGVLRLVLELDGE+V RVDPHIGLLHRGTEKLIE KTY Sbjct: 1 MNEQPENLRNFTINFGPQHPAAHGVLRLVLELDGEIVARVDPHIGLLHRGTEKLIEQKTY 60 Query: 61 LQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGITVPRRGQLIRVLYCEIGRILSHLLNVTT 120 LQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGI VPRRGQLIRVLYCEIGRILSHLLNVTT Sbjct: 61 LQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIEVPRRGQLIRVLYCEIGRILSHLLNVTT 120 Query: 121 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPPKLIDDIEAWCD 180 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLP KL+DDIEAWCD Sbjct: 121 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPQKLVDDIEAWCD 180 Query: 181 PFLKVVDDLDRLLTGNRIFKQRNVDIGVVPLKEAWEWGFSGVMVRGSGAAWDLRKSQPYE 240 PFLKVVDDLDRLLT NRIFKQRNVDIGVVPLKEAWEWGFSGVMVRGSGAAWDLRKSQPYE Sbjct: 181 PFLKVVDDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFSGVMVRGSGAAWDLRKSQPYE 240 Query: 241 CYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQKLKAPDGQGPVVVEDNKIAP 300 CYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIM+QCIQKL AP+G+GPVVVEDNK+AP Sbjct: 241 CYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMRQCIQKLNAPEGKGPVVVEDNKVAP 300 Query: 301 PRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYKCKIR 360 PRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYKCKIR Sbjct: 301 PRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYKCKIR 360 Query: 361 APGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398 APGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR Sbjct: 361 APGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398 >ref|YP_001240497.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. BTAi1] sp|A5EK97.1|NUOD_BRASB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gb|ABQ36591.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. BTAi1] Length = 398 Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/398 (92%), Positives = 387/398 (97%) Query: 1 MNEQPQNLRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTY 60 MNEQ LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIE KTY Sbjct: 1 MNEQSPALRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETKTY 60 Query: 61 LQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGITVPRRGQLIRVLYCEIGRILSHLLNVTT 120 LQA+PYFDRLDYVAPMNQEHAFCLAAE+LLGI VPRRGQLIRVLY EIGR+LSHLLNVTT Sbjct: 61 LQAMPYFDRLDYVAPMNQEHAFCLAAERLLGIEVPRRGQLIRVLYSEIGRLLSHLLNVTT 120 Query: 121 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPPKLIDDIEAWCD 180 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHA +FR+GGVHQDLPPKLIDDI+A+CD Sbjct: 121 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHANYFRIGGVHQDLPPKLIDDIDAFCD 180 Query: 181 PFLKVVDDLDRLLTGNRIFKQRNVDIGVVPLKEAWEWGFSGVMVRGSGAAWDLRKSQPYE 240 PFLKVVDDLD+LLTGNRIFKQRNVDIGVV LK+AWEWGFSGVMVRGSGAAWDLRKSQPY+ Sbjct: 181 PFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFSGVMVRGSGAAWDLRKSQPYD 240 Query: 241 CYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQKLKAPDGQGPVVVEDNKIAP 300 YAEM+FD+PIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQKL+APDGQGPVVV DNKIAP Sbjct: 241 VYAEMEFDVPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQKLRAPDGQGPVVVTDNKIAP 300 Query: 301 PRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYKCKIR 360 PRRGEMKRSMEALIHHFKLYTEGVHVPAGE+YAAVEAPKGEFGVYLV+DG+NKPYKCKIR Sbjct: 301 PRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKGEFGVYLVSDGSNKPYKCKIR 360 Query: 361 APGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398 APGFAHLQAMD +CRGHLLADVSAILGSLDIVFGEVDR Sbjct: 361 APGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398 >ref|ZP_08629626.1| NADH-ubiquinone oxidoreductase chain D [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08119.1| NADH-ubiquinone oxidoreductase chain D [Bradyrhizobiaceae bacterium SG-6C] Length = 402 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/398 (93%), Positives = 384/398 (96%) Query: 1 MNEQPQNLRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTY 60 +N + +RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIE KTY Sbjct: 5 LNAEQTGMRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTY 64 Query: 61 LQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGITVPRRGQLIRVLYCEIGRILSHLLNVTT 120 LQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGI VPRRGQLIRVLYCEIGRILSHLLNVTT Sbjct: 65 LQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIQVPRRGQLIRVLYCEIGRILSHLLNVTT 124 Query: 121 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPPKLIDDIEAWCD 180 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPP LI+DI+AWCD Sbjct: 125 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPPALINDIDAWCD 184 Query: 181 PFLKVVDDLDRLLTGNRIFKQRNVDIGVVPLKEAWEWGFSGVMVRGSGAAWDLRKSQPYE 240 PFLKVVDDL+ LLT NRIFKQRNVDIGVV L++AWEWGFSGVMVRGSGAAWDLRKSQPYE Sbjct: 185 PFLKVVDDLETLLTDNRIFKQRNVDIGVVTLEQAWEWGFSGVMVRGSGAAWDLRKSQPYE 244 Query: 241 CYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQKLKAPDGQGPVVVEDNKIAP 300 CY EMDFDIPIGKNGDCYDRY IRMEEMRQSVRIMKQCI+KL+AP+GQGPVVV+DNKIAP Sbjct: 245 CYDEMDFDIPIGKNGDCYDRYCIRMEEMRQSVRIMKQCIEKLRAPEGQGPVVVDDNKIAP 304 Query: 301 PRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYKCKIR 360 PRR EMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFGV+LVADGTNKPYKCKIR Sbjct: 305 PRRSEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFGVFLVADGTNKPYKCKIR 364 Query: 361 APGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398 APGFAHLQAMD ICRGHLLADVSAILGSLDIVFGEVDR Sbjct: 365 APGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 402 >ref|YP_001206160.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. ORS 278] sp|A4YVK9.1|NUOD_BRASO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D emb|CAL77935.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D) (NDH-1, chain D) [Bradyrhizobium sp. ORS 278] Length = 398 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/398 (92%), Positives = 386/398 (96%) Query: 1 MNEQPQNLRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTY 60 MNEQ LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIE KTY Sbjct: 1 MNEQSPALRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETKTY 60 Query: 61 LQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGITVPRRGQLIRVLYCEIGRILSHLLNVTT 120 LQA+PYFDRLDYVAPMNQEHAFCLAAE+LLGI VPRRGQLIRVLY EIGR+LSHLLNVTT Sbjct: 61 LQAMPYFDRLDYVAPMNQEHAFCLAAERLLGIEVPRRGQLIRVLYSEIGRLLSHLLNVTT 120 Query: 121 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPPKLIDDIEAWCD 180 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHA +FR+GGVHQDLPPKL+DDI+A+CD Sbjct: 121 QAMDVGALTPPLWGFEEREKLMVFYERASGSRMHANYFRIGGVHQDLPPKLVDDIDAFCD 180 Query: 181 PFLKVVDDLDRLLTGNRIFKQRNVDIGVVPLKEAWEWGFSGVMVRGSGAAWDLRKSQPYE 240 PFLKVVDDLD+LLTGNRIFKQRNVDIGVV LK+AWEWGFSGVMVRGSGAAWDLRKSQPY+ Sbjct: 181 PFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFSGVMVRGSGAAWDLRKSQPYD 240 Query: 241 CYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQKLKAPDGQGPVVVEDNKIAP 300 YAEM+FDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCI KL+APDGQGPV++ DNKIAP Sbjct: 241 VYAEMEFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKLRAPDGQGPVLITDNKIAP 300 Query: 301 PRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYKCKIR 360 PRRGEMKRSMEALIHHFKLYTEGVHVPAGE+YAAVEAPKGEFGVYLVADGTNKPYKCKIR Sbjct: 301 PRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKGEFGVYLVADGTNKPYKCKIR 360 Query: 361 APGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398 APGFAHLQAMD +CRGHLLADVSAILGSLDIVFGEVDR Sbjct: 361 APGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398 >ref|YP_318497.1| NADH dehydrogenase subunit D [Nitrobacter winogradskyi Nb-255] sp|Q3SRE6.1|NUOD_NITWN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gb|ABA05145.1| NADH dehydrogenase subunit D [Nitrobacter winogradskyi Nb-255] Length = 402 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/392 (93%), Positives = 381/392 (97%) Query: 7 NLRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQAIPY 66 +RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIE KTYLQAIPY Sbjct: 11 GMRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPY 70 Query: 67 FDRLDYVAPMNQEHAFCLAAEKLLGITVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVG 126 FDRLDYVAPMNQEHAFCLAAE+LLGI VPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVG Sbjct: 71 FDRLDYVAPMNQEHAFCLAAERLLGIAVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVG 130 Query: 127 ALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPPKLIDDIEAWCDPFLKVV 186 ALTPPLWGFEEREKLM+FYERASGSRMHAA+FR+GGVHQDLPP+LIDDIEAWCDPFL+VV Sbjct: 131 ALTPPLWGFEEREKLMMFYERASGSRMHAAYFRIGGVHQDLPPRLIDDIEAWCDPFLQVV 190 Query: 187 DDLDRLLTGNRIFKQRNVDIGVVPLKEAWEWGFSGVMVRGSGAAWDLRKSQPYECYAEMD 246 DLDRLLT NRIFKQRNVDIGVV L++AWEWGFSGVMVRGSGAAWDLRK+QPYECYAEMD Sbjct: 191 ADLDRLLTANRIFKQRNVDIGVVTLEQAWEWGFSGVMVRGSGAAWDLRKAQPYECYAEMD 250 Query: 247 FDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQKLKAPDGQGPVVVEDNKIAPPRRGEM 306 FDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCI KL+APDGQGPV VEDNKI PPRRGEM Sbjct: 251 FDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKLRAPDGQGPVAVEDNKIFPPRRGEM 310 Query: 307 KRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYKCKIRAPGFAH 366 KRSMEALIHHFKLYTEG HVPAGE+YAAVEAPKGEFGVYLV+DG+NKPYKCKIRAPGFAH Sbjct: 311 KRSMEALIHHFKLYTEGFHVPAGEIYAAVEAPKGEFGVYLVSDGSNKPYKCKIRAPGFAH 370 Query: 367 LQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398 LQAMD ICRGHLLADVSAILGSLDIVFGEVDR Sbjct: 371 LQAMDFICRGHLLADVSAILGSLDIVFGEVDR 402