BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0035.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771557.1| NADH dehydrogenase subunit C [Bradyrhizobium ja... 371 e-101 ref|YP_001240498.1| NADH dehydrogenase subunit C [Bradyrhizobium... 366 1e-99 ref|YP_001206161.1| NADH dehydrogenase subunit C [Bradyrhizobium... 357 6e-97 ref|YP_577471.1| NADH dehydrogenase subunit C [Nitrobacter hambu... 356 1e-96 ref|YP_318498.1| NADH dehydrogenase subunit C [Nitrobacter winog... 350 7e-95 >ref|NP_771557.1| NADH dehydrogenase subunit C [Bradyrhizobium japonicum USDA 110] dbj|BAC50182.1| NADH ubiquinone oxidoreductase chain C [Bradyrhizobium japonicum USDA 110] Length = 203 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/199 (87%), Positives = 187/199 (93%) Query: 1 MDDGKLDALGQTIVSALPGAATAHSVAFNQLTIDVEIGRIVDVARFLRDDPGCRFVNVTD 60 MDDGKLDALGQTIVSALPGAAT HSVAFNQLT+DVE RIV+V ++LRDDP CRFVN TD Sbjct: 1 MDDGKLDALGQTIVSALPGAATGHSVAFNQLTVDVEAARIVEVVKYLRDDPNCRFVNFTD 60 Query: 61 VTAVDYPSREKRFDVVYHLLSPTLNTRIRLRGKADETTQVPSIIGVFPGADWFERETYDL 120 +TAVDYPSREKRFDVVYHL+SPTLNTRIRL+ +ADETTQVPS+I VFPGADWFERE YDL Sbjct: 61 ITAVDYPSREKRFDVVYHLMSPTLNTRIRLKAQADETTQVPSLIDVFPGADWFEREAYDL 120 Query: 121 YGVIFTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDQEKRVLYEPVRLNQEFRKF 180 YGV F GHPDMRR+LTDYGF+GHPLRKDFP TGFVEVRYDDQEKRV+YEPVRLNQEFRKF Sbjct: 121 YGVFFVGHPDMRRILTDYGFEGHPLRKDFPTTGFVEVRYDDQEKRVVYEPVRLNQEFRKF 180 Query: 181 DFLSPWEGADYPLPGDEKA 199 DFLSPWEGADYPLPGDEKA Sbjct: 181 DFLSPWEGADYPLPGDEKA 199 >ref|YP_001240498.1| NADH dehydrogenase subunit C [Bradyrhizobium sp. BTAi1] gb|ABQ36592.1| NADH dehydrogenase subunit C [Bradyrhizobium sp. BTAi1] Length = 201 Score = 366 bits (939), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 172/199 (86%), Positives = 185/199 (92%) Query: 1 MDDGKLDALGQTIVSALPGAATAHSVAFNQLTIDVEIGRIVDVARFLRDDPGCRFVNVTD 60 MDDG+LDALGQTIVSALPGAA HSVAFNQLT+D+E RIV+VA++LRDDP CRFVN+TD Sbjct: 1 MDDGRLDALGQTIVSALPGAALGHSVAFNQLTVDIEPTRIVEVAKYLRDDPACRFVNITD 60 Query: 61 VTAVDYPSREKRFDVVYHLLSPTLNTRIRLRGKADETTQVPSIIGVFPGADWFERETYDL 120 +TAVDYP R KRFDVVYH LSPTLN R+RL+G+ADE TQVPS+I VFPGADWFERE YDL Sbjct: 61 ITAVDYPERAKRFDVVYHFLSPTLNARVRLKGQADEATQVPSLIDVFPGADWFEREAYDL 120 Query: 121 YGVIFTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDQEKRVLYEPVRLNQEFRKF 180 YGVIF GHPDMRRLLTDYGFDGHPLRKDFP TGFVEVRYDDQEKRV+YEPVRLNQEFRKF Sbjct: 121 YGVIFVGHPDMRRLLTDYGFDGHPLRKDFPTTGFVEVRYDDQEKRVIYEPVRLNQEFRKF 180 Query: 181 DFLSPWEGADYPLPGDEKA 199 DFLSPWEGADYPLPGDEKA Sbjct: 181 DFLSPWEGADYPLPGDEKA 199 >ref|YP_001206161.1| NADH dehydrogenase subunit C [Bradyrhizobium sp. ORS 278] emb|CAL77936.1| NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C) (NDH-1, chain C) [Bradyrhizobium sp. ORS 278] Length = 201 Score = 357 bits (916), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 169/199 (84%), Positives = 182/199 (91%) Query: 1 MDDGKLDALGQTIVSALPGAATAHSVAFNQLTIDVEIGRIVDVARFLRDDPGCRFVNVTD 60 MDDG+LDALGQTIVSALPGAA HSVAFNQLT+ V+ RIV+V + LRDDPGCRF+N TD Sbjct: 1 MDDGRLDALGQTIVSALPGAALGHSVAFNQLTVTVDPARIVEVVKHLRDDPGCRFINFTD 60 Query: 61 VTAVDYPSREKRFDVVYHLLSPTLNTRIRLRGKADETTQVPSIIGVFPGADWFERETYDL 120 +TAVDYP R KRF+VVYH LSPTLNTRIRL+ +ADE TQVPSII VFPGADWFERE YDL Sbjct: 61 ITAVDYPERAKRFEVVYHFLSPTLNTRIRLKAEADEMTQVPSIIDVFPGADWFEREAYDL 120 Query: 121 YGVIFTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDQEKRVLYEPVRLNQEFRKF 180 YGVIF GHPDMRR+LTDYGFDGHPLRKDFP TGFVEVRYDDQEKRV+YEPVRLNQEFR+F Sbjct: 121 YGVIFVGHPDMRRILTDYGFDGHPLRKDFPTTGFVEVRYDDQEKRVIYEPVRLNQEFRRF 180 Query: 181 DFLSPWEGADYPLPGDEKA 199 DFLSPWEGADYPLPGDEKA Sbjct: 181 DFLSPWEGADYPLPGDEKA 199 >ref|YP_577471.1| NADH dehydrogenase subunit C [Nitrobacter hamburgensis X14] gb|ABE63011.1| NADH dehydrogenase subunit C [Nitrobacter hamburgensis X14] Length = 206 Score = 356 bits (913), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 169/199 (84%), Positives = 182/199 (91%) Query: 1 MDDGKLDALGQTIVSALPGAATAHSVAFNQLTIDVEIGRIVDVARFLRDDPGCRFVNVTD 60 MDD +LDALGQ IV+ LPGAA HSVAF QL+I VE+ +IV+VARF+RDD CRFVN+TD Sbjct: 1 MDDSRLDALGQMIVATLPGAAIGHSVAFGQLSITVEVAKIVEVARFIRDDQRCRFVNITD 60 Query: 61 VTAVDYPSREKRFDVVYHLLSPTLNTRIRLRGKADETTQVPSIIGVFPGADWFERETYDL 120 VTAVDYP REKRFDVVY+ LSPTLNTRIRL +A ETTQVPS+I VFPGADWFERETYDL Sbjct: 61 VTAVDYPGREKRFDVVYNFLSPTLNTRIRLNAQASETTQVPSLIDVFPGADWFERETYDL 120 Query: 121 YGVIFTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDQEKRVLYEPVRLNQEFRKF 180 YGVIFTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDD EKRV+YEPVRLNQEFRKF Sbjct: 121 YGVIFTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDAEKRVVYEPVRLNQEFRKF 180 Query: 181 DFLSPWEGADYPLPGDEKA 199 DF+SPWEGADYPLPGDEKA Sbjct: 181 DFMSPWEGADYPLPGDEKA 199 >ref|YP_318498.1| NADH dehydrogenase subunit C [Nitrobacter winogradskyi Nb-255] gb|ABA05146.1| NADH dehydrogenase subunit C [Nitrobacter winogradskyi Nb-255] Length = 206 Score = 350 bits (898), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 167/199 (83%), Positives = 177/199 (88%) Query: 1 MDDGKLDALGQTIVSALPGAATAHSVAFNQLTIDVEIGRIVDVARFLRDDPGCRFVNVTD 60 MD+ +LDALGQ IV+ LPGAAT HSV+F QLT+ VE +IV+VARFLRDD CRFVN D Sbjct: 1 MDESRLDALGQMIVATLPGAATGHSVSFGQLTVTVEAAKIVEVARFLRDDRRCRFVNFID 60 Query: 61 VTAVDYPSREKRFDVVYHLLSPTLNTRIRLRGKADETTQVPSIIGVFPGADWFERETYDL 120 TAVDYP REKRFDVVYH LSPTLN RIRLR A ETTQVPS+I VFPGADWFERE YDL Sbjct: 61 ATAVDYPGREKRFDVVYHFLSPTLNARIRLRAHASETTQVPSLIDVFPGADWFEREAYDL 120 Query: 121 YGVIFTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDQEKRVLYEPVRLNQEFRKF 180 YGVIFTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDD EKRV+YEPVRLNQEFRKF Sbjct: 121 YGVIFTGHPDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDAEKRVVYEPVRLNQEFRKF 180 Query: 181 DFLSPWEGADYPLPGDEKA 199 DF+SPWEGADYPLPGDEKA Sbjct: 181 DFMSPWEGADYPLPGDEKA 199