BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0053.0033.p         (121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771559.1| NADH dehydrogenase subunit A [Bradyrhizobium ja...   229   1e-58
ref|YP_001206163.1| NADH dehydrogenase subunit A [Bradyrhizobium...   227   5e-58
ref|YP_002288908.1| NADH-quinone oxidoreductase subunit a [Oligo...   227   5e-58
ref|ZP_07028224.1| NADH-ubiquinone/plastoquinone oxidoreductase ...   226   1e-57
ref|ZP_08629623.1| NADH ubiquinone oxidoreductase chain A [Brady...   223   5e-57

>ref|NP_771559.1| NADH dehydrogenase subunit A [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50184.1| NADH ubiquinone oxidoreductase chain A [Bradyrhizobium japonicum
           USDA 110]
          Length = 121

 Score =  229 bits (583), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/121 (94%), Positives = 118/121 (97%)

Query: 1   MTGILQNYLPLVVFIGVASLIGLALLIAPFLVAFQSPDPEKLSAYECGFNAFDDARMKFD 60
           M+GILQNYLPLVVFIGVA LIGL LLIAPF+VAFQ PDPEKLSAYECGFNAFDDARMKFD
Sbjct: 1   MSGILQNYLPLVVFIGVAGLIGLVLLIAPFIVAFQQPDPEKLSAYECGFNAFDDARMKFD 60

Query: 61  VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGATGFWSMMVFLAVLTVGFAYEWKKGALQW 120
           VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGATGFWSM+VFLAVLTVGFAYEWKKGAL+W
Sbjct: 61  VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGATGFWSMVVFLAVLTVGFAYEWKKGALEW 120

Query: 121 D 121
           D
Sbjct: 121 D 121


>ref|YP_001206163.1| NADH dehydrogenase subunit A [Bradyrhizobium sp. ORS 278]
 ref|YP_001240500.1| NADH dehydrogenase subunit A [Bradyrhizobium sp. BTAi1]
 emb|CAL77938.1| NADH-quinone oxidoreductase chain A (NADH dehydrogenase I, chain A)
           (NDH-1, chain A) [Bradyrhizobium sp. ORS 278]
 gb|ABQ36594.1| NADH dehydrogenase subunit A [Bradyrhizobium sp. BTAi1]
          Length = 121

 Score =  227 bits (578), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 112/121 (92%), Positives = 118/121 (97%)

Query: 1   MTGILQNYLPLVVFIGVASLIGLALLIAPFLVAFQSPDPEKLSAYECGFNAFDDARMKFD 60
           MTGILQNYLPLVVFIGVA++IG+ LLIAPFLVA+Q PDPEKLSAYECGFNAFDDARMKFD
Sbjct: 1   MTGILQNYLPLVVFIGVAAIIGVVLLIAPFLVAYQQPDPEKLSAYECGFNAFDDARMKFD 60

Query: 61  VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGATGFWSMMVFLAVLTVGFAYEWKKGALQW 120
           VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGA GFWSM+VFLAVLTVGFAYEWKKGAL+W
Sbjct: 61  VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGAAGFWSMLVFLAVLTVGFAYEWKKGALEW 120

Query: 121 D 121
           D
Sbjct: 121 D 121


>ref|YP_002288908.1| NADH-quinone oxidoreductase subunit a [Oligotropha carboxidovorans
           OM5]
 ref|YP_004633047.1| NADH-quinone oxidoreductase subunit A [Oligotropha carboxidovorans
           OM5]
 gb|ACI93043.1| NADH-quinone oxidoreductase subunit a [Oligotropha carboxidovorans
           OM5]
 gb|AEI03229.1| NADH-quinone oxidoreductase subunit A [Oligotropha carboxidovorans
           OM4]
 gb|AEI06806.1| NADH-quinone oxidoreductase subunit A [Oligotropha carboxidovorans
           OM5]
          Length = 121

 Score =  227 bits (578), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 112/121 (92%), Positives = 117/121 (96%)

Query: 1   MTGILQNYLPLVVFIGVASLIGLALLIAPFLVAFQSPDPEKLSAYECGFNAFDDARMKFD 60
           M GILQNYLPLVVFIGVA++IGLALLIAPFLVA+Q PDPEKLSAYECGFNAFDDARMKFD
Sbjct: 1   MNGILQNYLPLVVFIGVAAVIGLALLIAPFLVAYQQPDPEKLSAYECGFNAFDDARMKFD 60

Query: 61  VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGATGFWSMMVFLAVLTVGFAYEWKKGALQW 120
           VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGA GFWSMMVFL VLT+GFAYEWKKGAL+W
Sbjct: 61  VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGAAGFWSMMVFLGVLTIGFAYEWKKGALEW 120

Query: 121 D 121
           D
Sbjct: 121 D 121


>ref|ZP_07028224.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Afipia sp.
           1NLS2]
 gb|EFI50214.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Afipia sp.
           1NLS2]
          Length = 121

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/121 (91%), Positives = 117/121 (96%)

Query: 1   MTGILQNYLPLVVFIGVASLIGLALLIAPFLVAFQSPDPEKLSAYECGFNAFDDARMKFD 60
           M GILQNYLPLVVFIGVA++IGLALL+APFLVA+Q PDPEKLSAYECGFNAFDDARMKFD
Sbjct: 1   MGGILQNYLPLVVFIGVAAIIGLALLVAPFLVAYQQPDPEKLSAYECGFNAFDDARMKFD 60

Query: 61  VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGATGFWSMMVFLAVLTVGFAYEWKKGALQW 120
           VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGA GFWSMMVFL VLT+GFAYEWKKGAL+W
Sbjct: 61  VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGAVGFWSMMVFLGVLTIGFAYEWKKGALEW 120

Query: 121 D 121
           D
Sbjct: 121 D 121


>ref|ZP_08629623.1| NADH ubiquinone oxidoreductase chain A [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP08116.1| NADH ubiquinone oxidoreductase chain A [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 121

 Score =  223 bits (569), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 110/121 (90%), Positives = 116/121 (95%)

Query: 1   MTGILQNYLPLVVFIGVASLIGLALLIAPFLVAFQSPDPEKLSAYECGFNAFDDARMKFD 60
           M GILQNYLPLVVFIGVA++IGLALLIAPF+VA+Q PDPEKLSAYECGFNAFDDARMKFD
Sbjct: 1   MGGILQNYLPLVVFIGVATVIGLALLIAPFIVAYQQPDPEKLSAYECGFNAFDDARMKFD 60

Query: 61  VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGATGFWSMMVFLAVLTVGFAYEWKKGALQW 120
           VRFYLVAILFIIFDLEVAFLFPWAVAFGKLG  GFWSMMVFL VLT+GFAYEWKKGAL+W
Sbjct: 61  VRFYLVAILFIIFDLEVAFLFPWAVAFGKLGLAGFWSMMVFLGVLTIGFAYEWKKGALEW 120

Query: 121 D 121
           D
Sbjct: 121 D 121